Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq10526 354 7e-93 seq28654 98.7 9e-16 seq27511 95.1 1e-14 >seq10526 Length=5062 Score = 354 bits (392), Expect = 7e-93 Identities = 925/1390 (67%), Gaps = 42/1390 (3%) Strand=Plus/Minus Query 59754 TCTAAAGGCGGTCGATATAAAAATGACCGTCAAACTATGTAATTCGGACGGATGCACTTC 59813 || ||||| || |||| ||| |||| || | || || ||| ||||| |||| ||| Sbjct 4297 TCGAAAGGTGGAAGATACCAAA-TGACAGTGGAGCTTTGCAATGAAGACGGCTGCAGTTC 4239 Query 59814 GAGTCAGCCGGTCGATGTTGTCATTGCAGATACCGACGGCTCTCATCTCGCTCCGTTATA 59873 ||| | || ||| ||||| | || |||||||| || |||| | |||| | | Sbjct 4238 AAGTGATCCCACCGAAATTGTCGTGGCCGATACCGATGGAAGTCATTTACCTCCTCTGGA 4179 Query 59874 TTATGAATATCAAGAACTGAACCAGCCCTTCGAAAGTCGAGTAGTGGATAAAGTCGTTGC 59933 ||| || |||| || |||| ||| ||| | |||| ||||| || | Sbjct 4178 ATATACATTGGGAGAAAAAAATAAGCCGTTC--AAGCAAACATCTGGA-AAAGTTGTGGG 4122 Query 59934 CGCATATTTTGTCGAATGGGGTGTTTATCCTAGAAATTTTCCTGTAGATCGAGTGCCCAC 59993 || || || || ||||||||||| |||||||| || || || || ||||| | || | Sbjct 4121 TGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTAT 4062 Query 59994 TCCTAATCTATCGCATATTCTATACGGATTTATTCCGATATGCGGCGGCGACGGTATCAA 60053 |||||||| | ||| | || ||||| |||||||| || |||||||| ||||| || || Sbjct 4061 ACCTAATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATTAA 4002 Query 60054 CGACAGTCTTAAAACCATAACCGGTAGTTTCGAAGCGCTTCAGCGATCGTGTTCAGGTCG 60113 || ||| | ||| || || |||||| |||| || |||||||| ||| || || Sbjct 4001 TGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGATCCTGTAGCGGCCG 3942 Query 60114 AGACGACTTTAAAGTATCAATTCACGATCCATGGGCCGCCGTCCAGAAACCCCAAAAACA 60173 || ||||| ||||| ||||| |||||||||||||| || | || ||||| |||||| Sbjct 3941 TGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGG 3882 Query 60174 AGTAACCGCTTGGAACGAACCATACAAAGGTAATTTCGGACAATTAATGGCAGCCAAACT 60233 | | | | |||||||| || |||||||| || || || ||||||||| || |||| Sbjct 3881 ATTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACA 3822 Query 60234 GGCAAATCCCCACATCAAAGTGTTGCCCTCGATCGGAGGTTGGACTCTATCCGATCCGTT 60293 || || | | || | | ||||| || || || ||||| || ||||||| || Sbjct 3821 AGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCTTT 3762 Query 60294 CTTTTACTTTCACGATACGGATAAACGA--AAGATTTTTGTAGATTCTGTCGTGGAGTTT 60351 ||| | || || | ||| || | ||||| || || || || ||||||| Sbjct 3761 CTTCTTTTTAGTTGACAAATCTAAGAGAACACGATTTGTGCAG--TCAGTAAAGGAGTTT 3704 Query 60352 CTACAGACGTGGAAATTTTTCGACGGTGTCGACATCGACTGGGAGTTTCCCGGCGGAAAA 60411 || | || |||||||| ||||| ||||| || ||||| |||||||| || || || ||| Sbjct 3703 CTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAA 3644 Query 60412 GGTGCCAATCCCAACGTAGGCGACGCCGAACGCGATCGCGAAACGTACACCATTCTGTTG 60471 ||||| || || || | || | | ||| ||| | || || | | || || Sbjct 3643 GGTGCTAACCCTGACCTCGGTAGCCCAGAA---GATGGTGATTGTTATGTAAGTTTGATG 3587 Query 60472 AAAGATTTACGCGAGGCGCTAGATCGATTAACCCTC-GAAACGAATCGAACG---TACGA 60527 ||||| ||||| ||| || ||||| | | ||| | | |||| | | | ||||| Sbjct 3586 AAAGAATTACGTGAGATGC----TCGATGAGCTCTCTGCTAAGAATGGTAAGAAATACGA 3531 Query 60528 GTTGACCAGCGCAATTAGCGCCGGCGATGACAAAATCGCCGTCGTCGACTACACCGCTGC 60587 || || || |||||||| || || |||||| || || ||||| || Sbjct 3530 ATTAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTTGTTGACTATGGTAAGGC 3471 Query 60588 TCAAGAATATTTAGATTTAAtttttttGATGACGTACGATTTTAAAGGAGCCTGGTCGAA 60647 |||| | ||| | ||| ||||| ||||||| ||||| || || ||||||||||| || Sbjct 3470 TCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAA 3411 Query 60648 TAACGATCTGGGCTATCAGACTACTCTATACGCTCCTTCGTTTAATCCTAAAGAACATTA 60707 | | ||| || |||| || | | ||||| ||| ||| ||||| || ||| ||| Sbjct 3410 TGATACTCTTGGACATCAAACGCCATTGTACGCGCCTGCGTGGAATCCCAAGGAAACTTA 3351 Query 60708 TACTACCGATTTTGCCGT-TCGTGCTCTACTCAAGCAAAAAGTCGAGAATaaaaaaaTTA 60766 || | || |||| || | || | || ||| ||| | ||| || ||| Sbjct 3350 CACATCTGACTTTGGAGTAAAATACT-TGCTGGCGCAGGGAGTGAATCCTAAGAAGATTG 3292 Query 60767 TTGTCGGCGTGGCCATGTACGGTCGCGGCTGGACCGGCGTAAGCGATTTTGTTGACGATA 60826 | || || || || ||||| ||||| |||||||| ||||| |||| || || | Sbjct 3291 TAGTAGGTGTTGCTATGTATGGTCGTGGCTGGACTGGCGTTCATGATT---ACGAAGACA 3235 Query 60827 ATAATCCATTTTCCGGAACGGCCAAGGGACCGGTCAAAGGAACATGGGAAGACGGAGTCG 60886 | | ||| || | || | || | ||||| ||||||||||| ||| |||||||||| | Sbjct 3234 ACATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTGG 3175 Query 60887 TCGACTATAGAGAGATTTTCAAT-AATTTCGTC--GCCAATAACCCGATGGAAT---ATT 60940 | ||||| || |||||| ||| || || || | ||| | ||| | ||| Sbjct 3174 TTGACTACAGGGAGATTGCGAATGAAATTGCTCAAGGCAA------GTGGGAGTTCCATT 3121 Query 60941 ACGATTCCGTTGCAAAAGCGGCGTACGTCTTTAATAAC-TCGACCGGCGAGCTCATCACT 60999 |||| || || |||| | || || ||| | | | || || || || || | || Sbjct 3120 ACGACAATGTCGCCCAAGCCCCCTATGT-TTTCAGACCATCAACTGGAGATCTTGTAACC 3062 Query 61000 TACGACAATCCTCGGTCGGTTCTGGATAAAGCAAAATATGTATTGGACTA--TAGCTTGG 61057 || || ||| || | || ||| | || || | ||||||||| | | || ||| | | Sbjct 3061 TATGATAATGCTAGATCTGTTATTGAAAAGGGTAAATATGTA-AGAAATAACAAGC-TAG 3004 Query 61058 GTGGTTTGTTCGCTTGGGAGATCGACGCCGACAACGGATTACTTCTAAACGCCATGAACA 61117 ||||| | || |||||||| | ||||| || || || || || || |||||||||| Sbjct 3003 GTGGTCTCTTTGCTTGGGAAGTGGACGCTGATAATGGTGACCTACTGAATGCCATGAACA 2944 Query 61118 GCGGTCTCGG 61127 |||||||| Sbjct 2943 TGGGTCTCGG 2934 >seq28654 Length=3315 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | |||||||| ||| | || || ||| | ||||| | ||||| ||| || Sbjct 1018 ATGCAGATCTTTGTAAAGACACTGACAGGGAAAACTATCACATTAGAAGTTGAACCCTCA 959 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || ||| || || || ||||||||||| || || ||||| Sbjct 958 GACACTATTGAAAATGTTAAAGCTAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 899 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || ||||| || || || |||| | | | || || || ||| Sbjct 898 CAACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACTCTCTCTGACTATAAT 839 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| ||||| ||||| | || || || ||| | || ||||||| Sbjct 838 ATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTTTACGAGGAGG 792 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||||| || ||||| | || || | ||||| ||| ||| | Sbjct 1474 ATGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAA-CCATC 1416 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || |||||| | || ||| ||||| ||||| ||||| || || || || || Sbjct 1415 TGACACAATCGAGAATGTCAAAGCTAAAATACAGGATAAGGAGGGCATCCCCCCAGACCA 1356 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || | ||||||| | || || ||| | ||||||| | | | | | |||||||| Sbjct 1355 ACAGCGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAA 1296 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||||| ||||| || ||| | || |||||| Sbjct 1295 TATTCAGAAAGAGTCAACCCTGCACTTAGTG 1265 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | || |||||| | ||||| | || || || | | Sbjct 2386 ATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAGCCGTCC 2327 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || || ||| || || ||||||||||| || || ||||| Sbjct 2326 GACACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 2267 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || |||| | || |||||||| ||||||| | | | ||||| ||| Sbjct 2266 CAGAGGCTTATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACATTATCTGATTATAAT 2207 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||| ||||| ||| | |||||||| || Sbjct 2206 ATTCAAAAGGAATCTACCCTACATTTAGTATT 2175 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||| |||| || || | || || | || || || |||| | Sbjct 1702 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAGGTGGA-GCCATC 1644 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | ||||| || ||| |||||||||||||| || || ||||| Sbjct 1643 TGACACCATTGAAAATGTAAAGGCTAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCA 1584 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 ||| | || || | | ||||| || || ||||||| | | | |||| || ||| Sbjct 1583 ACAACGTCTTATCTTTGCTGGCAAGCAGCTAGAAGATGGTCGCACCCTGTC--TGACTAC 1526 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || |||||||| || ||| |||||||||| Sbjct 1525 AACATCCAAAAAGAGTCTACCCTTCATTTAGT 1494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||| | || |||||| | || || | ||||| ||||| Sbjct 2158 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 2099 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || ||| ||||| || ||||| || || || || ||||| Sbjct 2098 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAA 2039 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | || |||| | ||||| ||| | ||||||| | | | |||| | | |||| Sbjct 2038 CAACGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTG--ACTACA 1981 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || ||||||||||| || | || ||||| | | || ||||| || Sbjct 1980 ACATCCAAAAAGAATCTACTTTGCACTTAGTACTTCGTTTAAGAGGTGG 1932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | ||||| |||||| | || || ||| | || || | ||||| ||| | Sbjct 2618 CAAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACC 2559 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||||||| || | |||||| |||||| || || || || || || || || Sbjct 2558 TTCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGA 2499 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||| ||| | | |||| || || || ||| | ||||| | | | | | || || Sbjct 2498 TCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGACTA 2439 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||||||||||||||||| || |||| || || || Sbjct 2438 TAATATTCAAAAAGAATCTACTCTTCACTTGGTATT 2403 >seq27511 Length=800 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| ||| | || || || | ||||| | ||||| ||||| Sbjct 445 ATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTGGAAGCTTCT 504 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || |||||| |||||||||||||| || || |||||| Sbjct 505 GATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGTATTCCCCCAGATCAG 564 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||||| |||| | || || || || ||||||| | | | || |||||| Sbjct 565 CAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTATCTGACTACAAT 624 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||| || ||||| || Sbjct 625 ATTCAGAAGGAATCAAC 641 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 25187 GTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC-GATACTATCGA 25245 ||||| ||| | || || || | ||||| | ||||| || ||| | ||||| || || Sbjct 1 GTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGA-GCCTTCTGATACAATTGA 59 Query 25246 GCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCAT 25305 | || ||| ||||||| ||||||||||| || || || |||||||||||||| || Sbjct 60 AAATGTTAAAGCAAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCAGCAAAGACTTAT 119 Query 25306 TTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGA 25365 || | || || || || ||||||| | | | |||||||| ||||| ||||| Sbjct 120 TTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTATCTGATTACAACATTCAGAAAGA 179 Query 25366 ATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||| || | || |||| || | ||||||| |||| Sbjct 180 ATCTACTTTGCACCTAGTACTACGGCTGAGAGGTGGAA 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443552798854560