Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq28654 122 7e-23 seq27512 91.5 1e-13 seq133356 87.8 1e-12 seq27511 82.4 6e-11 >seq28654 Length=3315 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| |||||||||||| | ||||| || || ||||| | ||| ||| | Sbjct 2158 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 2099 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | |||||| ||||| |||||||||||| | || |||||| Sbjct 2098 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCGGATCAA 2039 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | ||||||| ||||||||| |||||||||||| | || || || |||||| Sbjct 2038 CAACGTCTTATTTTTGCGGGCAAGCAATTAGAAGATGGTCGTACACTGTCTGACTACAAC 1979 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||||||||| | || |||||| | | ||| |||| || Sbjct 1978 ATCCAAAAAGAATCTACTTTGCACTTAGTACTTCGTTTAAGAGGTGG 1932 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| |||||||||||||| | ||||| |||||||||||| ||||| |||||| Sbjct 1930 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 1871 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| ||||| |||||||| ||| | || |||||| Sbjct 1870 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 1811 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | ||||| | ||| || || ||||| |||||| | || | || |||||| Sbjct 1810 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTCTCTGACTACAAC 1751 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| || ||||| || ||| ||||| || | | ||||| || Sbjct 1750 ATCCAAAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGG 1704 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| |||||||||||||| |||||||||||| ||||| |||||| Sbjct 1474 ATGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAACCATCT 1415 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | | | | || ||| ||||| || || || ||| | ||| || ||| Sbjct 1414 GACACAATCGAGAATGTCAAAGCTAAAATACAGGATAAGGAGGGCATCCCCCCAGACCAA 1355 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || |||| ||| || || ||||| |||||| | ||| || |||||||| Sbjct 1354 CAGCGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 1295 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || || ||||| || || || || ||||| Sbjct 1294 ATTCAGAAAGAGTCAACCCTGCACTTAGT 1266 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || |||||||| || | || || || ||||| || | || ||| || Sbjct 2387 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAGCCGTC 2328 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || | | | ||||| ||| || |||||||| || | ||| ||||| Sbjct 2327 CGACACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCA 2268 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATT--CTAAAACTATGGGCGATTAC 106436 ||| |||||||||| ||| || |||||| | |||||| | | | ||| | |||| Sbjct 2267 ACAGAGGCTTATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACATTATCTG--ATTAT 2210 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || ||||| |||||||| ||||||||||||||| || | || || || Sbjct 2209 AATATTCAAAAGGAATCTACCCTACATTTAGTATTGCGGCTTCGTGGCGG 2160 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 |||||||| || ||||| |||||| | || || || |||||||| ||||| ||||| Sbjct 2617 AAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCT 2558 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 |||| || ||| | || ||| |||||| ||||| |||||| | || ||| Sbjct 2557 TCCGATACTATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAGAT 2498 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||| | | |||| || || || ||||| ||||| ||| | || || Sbjct 2497 CAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGACTAT 2438 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || || |||||||||||||| || || || |||||| Sbjct 2437 AATATTCAAAAAGAATCTACTCTTCACTTGGTATTG 2402 >seq27512 Length=242 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| || ||| ||||||||||||| || || ||||| || ||| Sbjct 228 AATGCAAATATTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTTGAGCCCTC 169 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || | | | | || || ||||||| || || |||||| | || || || Sbjct 168 TGACACAATCGAAAATGTTAAGGCAAAAATTCAAGATAAGGAAGGCATTCCTCCAGACCA 109 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTAC 106436 |||||||||||||| ||| || || || | || ||| | | ||||| || ||| Sbjct 108 ACAAAGGCTTATTTTTGCTGGAAAGCAGCTTGAGGATGGACGTACACTAT--CAGACTAC 51 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTA 106469 || || || ||||||||||| ||||||||||| Sbjct 50 AATATTCAGAAAGAATCTACTTTACATTTAGTA 18 >seq133356 Length=434 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 99638 AACGGGTTTTATTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTTTGCAAAGTTGAA 99697 || || || |||||| |||| |||| || ||||| |||||||||||||| ||||| ||| Sbjct 224 AATGGCTTCTATTATCTGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAA 165 Query 99698 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCTGCAGATCATAAACGATGGGCGCCGCAA 99757 || ||| ||| | | ||||||||| || || || || | || |||||||| || Sbjct 164 ATTATGAAATGGGTTGCGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCTCAG 105 Query 99758 TGCCCGTTTATGCAGC 99773 ||||| || ||| || Sbjct 104 TGCCCTTTCCTGCGGC 89 >seq27511 Length=800 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| || ||| |||||||||| || || || ||||| ||| | Sbjct 216 AATGCAAATTTTTGTAAAGACACTGACTGGCAAAACTATCACTTTGGAAGTGGAAGCTTC 275 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | || || ||| ||| |||||||||||| | || ||| || Sbjct 276 TGATACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAAGAAGGCATTCCTCCTGACCA 335 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| |||||||||| ||| || ||||| | |||||| || || ||||| || Sbjct 336 ACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACATTGTCAGATTATAA 395 Query 106439 CATACAAAAAGAATCTAC 106456 || || || |||||||| Sbjct 396 TATTCAGAAGGAATCTAC 413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 400970953434464