Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq170880 190 3e-42 seq200937 150 3e-30 seq259364 141 1e-27 seq194167 129 8e-24 seq662 129 8e-24 seq224624 120 4e-21 seq192736 107 3e-17 seq169286 100 4e-15 seq9312 96.9 5e-14 >seq170880 Length=1133 Score = 190 bits (210), Expect = 3e-42 Identities = 218/291 (75%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 |||||| | ||| |||||| || ||||||| ||||| ||||| |||||||| | Sbjct 738 CATGTCCGAAAAGTACTTCACCCATGCCTCGCCCACCCTCTTCAATGCTGGCACGCCCCA 797 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 ||| ||| | |||| ||||| || ||| ||||||| ||| ||||||||||||||||| Sbjct 798 CCCCCAGCTTGCGTCTTGCTTCCTCGTGGCGATGAAGGACGACTCGATCGAGGGCATCTA 857 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 ||||| || ||| |||||| | ||||||||| | |||||||| ||||| | || | Sbjct 858 CGACACCCTGAAGACGTGCGCCATGATCTCCAAGACCGCCGGCGGTATCGGCCT--CCAC 915 Query 260074 A--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 | ||||| | || ||| | || |||| | | ||||| ||||| | || |||||| Sbjct 916 ATTCACAACATCCGTGCCTCCGGAAGCTACATCGGTGGCACAAACGGATACTCGAACGGC 975 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | ||||||||||| ||||| || ||| |||| || ||||| ||||||||| Sbjct 976 ATCGTGCCCATGCTCCGCGTCTTCAACAACACTGCCCGCTATGTCGACCAG 1026 >seq200937 Length=824 Score = 150 bits (166), Expect = 3e-30 Identities = 249/352 (71%), Gaps = 17/352 (5%) Strand=Plus/Minus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||||| |||||||| |||| | || ||||| |||| || ||| ||||| Sbjct 476 CGAGCCGCTCCTGCGCGAGAACCACCATCGGTTTGTGTTGTTTCCAATCAAGTACCACGA 417 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 || |||| ||| || || ||||| || || ||||| ||||||||| | |||| Sbjct 416 AATCTGGGCCGCATAC-AAGCGTGCTGAGGCGTCGTTCTGGACGGCCGAGGAGATGGACC 358 Query 1455835 TCGGCGCCG-ACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATC 1455890 | | || | | | | | |||||| ||||| |||||||||||| | |||||| Sbjct 357 T-GTCGAAGGATATGCACGACTGGGACAACAAGCTGAATGACGACGAGCGCTACTTCATC 299 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 ||||||||||| ||||| ||| ||| || ||||||||||| |||||||||| || Sbjct 298 AAGCACGTCCTTGCCTTCTTT-GCCACCTCGGATGGCATCGTCAACGAGAACCTGCTCGA 240 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 ||||| ||| |||||||| ||| | || | ||||||||||||||| Sbjct 239 GCGCTTCTCGAACGAGGTCCA--GGCC-----CCCG---AATCTACGGGTTCCAGATCAT 190 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTC 1456062 || || |||||||| || || |||||||||||| |||||||| ||| || Sbjct 189 GATGGAGAACATCCATTCCGAGGTCTACTCGCTCCTCATCGACACTTACATC 138 >seq259364 Length=501 Score = 141 bits (156), Expect = 1e-27 Identities = 178/237 (75%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 1456541 GAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCC 1456600 ||| |||| |||||||| | |||| | || ||||| ||| ||||||||||||||| Sbjct 501 GAGCTCGAAAAAGAGTTCCTTTGCGATGCACTCCCGGTCAAGCTGATCGGCATGAACGCC 442 Query 1456601 ACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCT 1456660 | || |||||||||||||| || || |||||||||||||| || | || |||| Sbjct 441 GAC-CTTATGTGCCAGTACATCGAGTTC-GTCGCCGACCGCCTTCTTGTTGCCGTCGGTA 384 Query 1456661 GCGGAGAAGCACTACCGGACGGCCA--ACCCGTTCCCATGGATGGAGTTGATCTCGCTCG 1456718 | |||||||||| ||| || |||||||| | |||||| ||||||| |||| Sbjct 383 ACCC-GAAGCACTACA--ACGCTCAGAACCCGTTCGATTTCATGGAGATGATCTCCCTCG 327 Query 1456719 AGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCCAAGGCCGGCGTCA 1456774 || |||||||||||||||||| |||| | ||| ||||| ||||||||||||| Sbjct 326 CCGGAAAGACCAACTTTTTCGAGAAGCGCGTTTCCGACTACGCAAAGGCCGGCGTCA 270 >seq194167 Length=2012 Score = 129 bits (142), Expect = 8e-24 Identities = 278/409 (68%), Gaps = 10/409 (2%) Strand=Plus/Plus Query 332926 GTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGC 332985 |||||| || || | ||||||||||| | | | | ||||| ||| |||||| || Sbjct 490 GTTGCACGCGAGCACGAACCGCGTCGTGTCCGCGTACAGCTCCATCGTCCGCCGGAGAGC 549 Query 332986 CTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCC 333045 ||| ||||| ||| || | |||| || |||||||| |||| |||||| || || || Sbjct 550 CTGCTGGGCGCCCGCTGTCATCGAGTCCGCTTCGTCGAGTATGACGATCTTCTGCCGACC 609 Query 333046 GTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCAC 333105 | ||| | |||| ||||| ||| | ||||| | || |||||||| | Sbjct 610 GGCCGGTAAGGTAACCTTTTTCTGCGCGAAGGCCTTGATCCGTGTCCGAACGACGTCGAT 669 Query 333106 GCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAG 333165 ||||||||||| |||||||| || || |||||| || |||| | | || ||| Sbjct 670 CCCGCGCTCGTCTGACGCGTTCAGCTCTAGCACG--CT-GTCGCGTACAGAGTCCCCGAG 726 Query 333166 GACGCGC----GCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCA 333221 | |||| || || ||| || |||||| |||||||| | || || | ||||| || Sbjct 727 CA-GCGCATTTGCAAGACACAAGACGCTCGTTGTCTTGCCAATTCCTGGAGCACCCGACA 785 Query 333222 GCAAGAGGT-TGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGC 333280 | | || |||||| |||||| || ||| | ||||| || || |||| || | Sbjct 786 ATATCATGTGTGGGCA-GTTGCCCTCACGGGCAATCGCCTCCAGACGCGCGACGGTGTCC 844 Query 333281 TCGTTGCCGACAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCC 333329 | || |||||||| || |||||| || ||||||||||||| || Sbjct 845 GCATTACCGACAATATCACTGAGCACACGCGGTCGGTACTTTTCGACCC 893 >seq662 Length=389 Score = 129 bits (142), Expect = 8e-24 Identities = 171/234 (73%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| |||||||| || || ||||| |||| ||| |||| |||| | Sbjct 122 ATCTACAAAGTGCTCAAACAAGTCCACCCGGACACCGGA-----ATC-TCCAGCAAGGCG 175 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || |||||||| |||| || |||| | ||||||| || Sbjct 176 ATGTCCATCATGAACTCGTTCGTGAACGACATTTTCGAGCGTATCGCCGCCGAGGC--GT 233 Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| || || | || ||||||| | ||||||| | | ||| | |||||| ||| Sbjct 234 CGCGACTCGCCCACTACAACAAGAGGTCCACGATCACGTCCAGGGAGGTGCAGACCTCCG 293 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | || | ||| |||||| |||||| |||||||||| ||| ||||||| Sbjct 294 TGAGGCTCCTGTTGCCCGGCGAGTTGGCCAAGCACGCCGTCAGCGAAGGCACCA 347 >seq224624 Length=368 Score = 120 bits (132), Expect = 4e-21 Identities = 176/245 (72%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 724897 CGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCAT 724956 |||||||| ||| ||||||||||| || |||||||| ||||| || | | || Sbjct 238 CGTACTCGACCTACATCTACAAGGTCCTGAAGCAGGTCCACCCGGACACTGGT-----AT 184 Query 724957 CCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG 725016 | || |||||| | ||| |||| | |||||||| ||||||||||| |||| ||||||| Sbjct 183 C-TCGAACAAGGCGATGCAGATCCTCAACTCGTTCGTCAACGACATCTTCGAGCGCATCG 125 Query 725017 GCACCGAGGCCGGTCGCCTGGC-GCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAG 725075 |||||| ||||| ||| | ||||||| |||||| | |||||| Sbjct 124 CTGGCGAGGCTTCCAAGCTGGCTGCG-TACAACAAGAAGTCGACGATCTCGGCTCGCGAG 66 Query 725076 ATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAG 725135 ||||||||||| || || || || | | ||| || ||| ||| |||||| |||||||| Sbjct 65 ATCCAGACCGCTGTCCGTCTCATTCTCCCCGGTGAGCTGTCCAAGCACGCGATCTCCGAG 6 Query 725136 GGCAC 725140 || || Sbjct 5 GGAAC 1 >seq192736 Length=2030 Score = 107 bits (118), Expect = 3e-17 Identities = 475/732 (65%), Gaps = 40/732 (5%) Strand=Plus/Plus Query 165441 CGACTGTTGGTCGTCGTCGGTCCGTGTTCGGCACACGACCCGGACGCCGTTGTCGAGTAT 165500 ||||| | ||||||||||| |||||||||| ||||| || | || | | || || Sbjct 1059 CGACTACTCGTCGTCGTCGGACCGTGTTCGGTGCACGATCCTGTTGCGGCGCTGGACTAC 1118 Query 165501 GGTCGGCGGTTGCGCGCCCTCGTACGGGCCGAGGTCGAC---GACGCCCTTTGTGTGGTC 165557 | || || || || |||| |||| | || ||| |||| | ||| Sbjct 1119 GCGCGACGTCTGGCCGTTCTCG------CCGACACCCACCGCGACACCCTCAAGATCGTC 1172 Query 165558 ATGCGCGCCTATGTCGAAAAGCCGCGCACGACCGTTGGATGGAAGGGCCTGGCCAGTGAC 165617 ||||||| || |||| |||||||| || || || ||||||||||||||| || || Sbjct 1173 ATGCGCGTGTACTTCGAGAAGCCGCGGACCACGGTCGGATGGAAGGGCCTGATCAACGAT 1232 Query 165618 CCCGATCTTGATGGCTCGTGCCGCCTGGCTGATGGCCTTGATACATCGCGCCGCCTGCTG 165677 || | | || ||| | | | | | || || || |||| |||||| Sbjct 1233 CCGGCCATGGACGGCAGCTTCGACATCGAGCGGGGACTGCGCACCGCGCGGGCGCTGCTG 1292 Query 165678 CGTGATCTCGTCGTCGACGTCGACCAACCCGTGGCCGTCGAGTTTCTC-AGTCCTCTGGT 165736 | || |||| ||||| ||| | ||||| | |||||| ||| | || | | Sbjct 1293 CTCGA---CGTCATCGACCTCGGACTGCCCGTCGGGTGCGAGTTCCTCGAACCCACCAG- 1348 Query 165737 GGCCCCC--TATTTGGCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAG 165794 ||| | || | || ||| ||| ||||||| || ||||||| |||||||| ||| Sbjct 1349 --CCCGCAGTACATCGCCGACGCGGTGTCGTGGGGTGCGATCGGTGCCCGCACCACGGAG 1406 Query 165795 AGCCAGGTGCACCGCGAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGC 165854 |||||| ||||| | | ||||||| |||| || |||| || || ||||| ||| || Sbjct 1407 TCCCAGGTCCACCGACAACTCGCGTCGGGGCTGTCGATGCCGATCGGGTTCAAGAACGGC 1466 Query 165855 ACCGACGGCAGCGTGGCGACGGCCCTCGATGCCGTG--CG-CACTGCCGCCCAGCCACAC 165911 ||||||||| |||| | | ||| |||| | ||| || | |||| ||| | |||| Sbjct 1467 ACCGACGGCGACGTGCAGGCCGCCATCGACGGGGTGAACGCCGCTGCGGCCGA---ACAC 1523 Query 165912 ACCTTTCTCTGGGTCGACGGC--CAAGGTCGCATTGCTGCTCATCATGGCGTCGGCAAC- 165968 ||| || | ||||||| | | | ||| | || | || ||| |||||| Sbjct 1524 GTCTTCTTCGGCGTCGACGACTTCGGCGGCGCGGCGGTGGTGCACACCGCG--GGCAACG 1581 Query 165969 CCTAGTGGCCACATTGTACTGCGTG--GGTCGCCCGGTCGGCCCAATTTTGACGCCTCAT 166026 || | | | ||| | | || || | ||||| ||| |||| || | ||| | | | Sbjct 1582 CCGACT-GTCACGTCATCCTCCGGGGCGGTCGATCGG--GGCCGAACTACGACCCGGCCT 1638 Query 166027 CGGTGGCGTCTGCCGTCGCTGCTGCCGCTGCCCGGCGGATGGACCCCCTGCCGGCCATTG 166086 |||| || ||||| || | | ||||| ||||| || | | | ||||| | Sbjct 1639 CGGT-CCG--TGCCG-CGTCGGCGGCGCTG-ACGGCGTCGGGTCTCGC-GCCGGGTGTGA 1692 Query 166087 TCATTGATTGCTCACACGACAACTCGGGCAAGGATCACCGACGACAGGCTGATGTCGTGC 166146 | || || ||||| |||| ||||||| |||||| |||| |||||||| || |||| || Sbjct 1693 TGATCGACTGCTCGCACGCCAACTCGAACAAGGACCACCACCGACAGGCCGAGGTCGGGC 1752 Query 166147 GTGACGTCGCCG 166158 | |||||||| Sbjct 1753 TGGCCGTCGCCG 1764 >seq169286 Length=382 Score = 100 bits (110), Expect = 4e-15 Identities = 189/274 (69%), Gaps = 12/274 (4%) Strand=Plus/Minus Query 2133574 TGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCCTTTATCGGCAAGG 2133633 ||||||| || || | | ||||| |||||||||||||| |||| || ||||||||| Sbjct 371 TGCGCGACATCGAGATGTACTCCACCTGCGAGCACCACCTCGTGCCGTTCTTCGGCAAGG 312 Query 2133634 CCCACGTGGGCTACCTGCCC-GCGGGCAAGATC-----ATCGGTCTGAGCAAGATCCCGC 2133687 | |||||||||||| | ||| || || | | || | ||| || |||| || | | Sbjct 311 CGCACGTGGGCTACATCCCCGGCCGGGACGGTCGGGTGACCGGGTTGTCCAAGCTCGCCC 252 Query 2133688 GCATCGTCGACATGTTTTCCGACCGCTTCCAAGTACAGGAGGCACTCACGCGCCAGATCG 2133747 | | || ||| | || | ||| || || |||||| ||||| |||||||| Sbjct 251 GGTTGGTGGACGGCTACGCCAAGCGCCCGCAGGTGCAGGAGCGGCTCACCACCCAGATCG 192 Query 2133748 CCGA---GAGCGTGAGCCAGGTTACGGGCGCGCGCGGCGTCGGCGTCGTCCTCGAGGGCC 2133804 |||| | |||| || || | || | | ||||||||| |||||| |||||| | Sbjct 191 CCGACGCGCTCGTGCGCAAGCT--CGATC-CCCGCGGCGTCATCGTCGTGATCGAGGCCG 135 Query 2133805 TGCACATGTGCGTGTGTATGCGCGGCGTGCGCAA 2133838 |||| ||||| || |||||||| || ||||| Sbjct 134 AGCACCTGTGCATGACGATGCGCGGGGTCCGCAA 101 >seq9312 Length=1716 Score = 96.9 bits (106), Expect = 5e-14 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| ||| | |||||||| ||||| || |||| ||| || | ||| || Sbjct 884 ATTTACAAAGTGTTGAAGCAGGTTCACCCGGACAC---TGGG--ATC-TCGAGTAAGGCC 937 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| || ||||| || ||||||||||| || | || ||||||| ||||||| Sbjct 938 ATGTCTATTATGAATTCCTTTGTCAACGATATTTTTGAACGCATCGCGGCCGAGGCGTCC 997 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || ||||||| | |||||| || | || | |||||| |||| Sbjct 998 CGCCTGGCGCACTACAACAAGAGGTCAACGATCACGTCGAGGGAAGTGCAGACCTCCGTC 1057 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || | | ||| || || || | ||||| ||| |||||| || Sbjct 1058 CGTCTCCTCCTTCCCGGTGAGCTCGCGAAACACGCTGTCAGCGAGGGAAC 1107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7151086035371446