Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_026584.1 Length=109871 Score E Sequences producing significant alignments: (Bits) Value seq68307 212 4e-50 seq24208 185 6e-42 seq101977 152 4e-32 seq216206 105 5e-18 seq50100 82.4 5e-11 >seq68307 Length=2902 Score = 212 bits (234), Expect = 4e-50 Identities = 262/358 (73%), Gaps = 3/358 (1%) Strand=Plus/Plus Query 97484 GACCGCCGCCTCAATCTCTCCGTCGGATACGAAAGCGCCCTGTATCCGGATGGCACCCCG 97543 |||| | ||| ||||| |||||| | ||| |||||||| |||||||||| | Sbjct 1678 GACCACGGCCGAGATCTCCTCGTCGGTGATGAACGCGCCCTGCATCCGGATGGGGCGGTT 1737 Query 97544 CGCCCCCACGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTC 97603 ||| |||| || | ||| | ||||| ||||| || ||||||| ||| || || || Sbjct 1738 CGCGCCCATCGGGATGAAGAGTCCGTCGCCCATGCCGATGAGCTTCTCCGCGCCCGGCTG 1797 Query 97604 GTCCAGGATCACCCGGCTATCGGTGAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCAC 97663 || ||||| || || ||||| || || | || ||||||| ||||| ||||| || Sbjct 1798 ATCGAGGATGACGCGCGAGTCGGTCAGCGACGACGTCGCGAACGCGAGCCGCGACGGGAC 1857 Query 97664 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 97723 ||||| ||||| ||||| ||||| || || || || || ||||| ||||| || || || Sbjct 1858 GTTGGTCTTGATCAGGCCGGTGACGACGTCGACCGACGGTCGCTGGGTCGCGAGCACCAG 1917 Query 97724 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 97783 || ||||| || ||||| |||||||||| ||||||||| || | ||||||| || Sbjct 1918 GTGGATACCCGCCGCGCGGGCCTTCTGGGTGATGCGGACGATCGCGTCCTCGACGTC--- 1974 Query 97784 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGG 97841 |||| || |||||||||||| ||||| |||||||| | ||| |||||||||| Sbjct 1975 CTTGGGCGCGGTCATCATGAGGTCGGCGAGCTCGTCGACGATGGCCAGGATGTAGGGG 2032 Score = 138 bits (152), Expect = 8e-28 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 97968 AGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGC 98027 || || ||||| || | ||| || || ||||| ||||||||||||||||| | ||| | | Sbjct 2219 AGATGCGGGATGCCCTCGTACGGCGTCAGTTCGACCATCTTCGGGTCGATGAGGATCATC 2278 Query 98028 TTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTG 98087 ||| || || | || ||| |||| || |||| ||||||||| | ||||||| Sbjct 2279 CGGACGTCGTCCGGGGTCGCCCGGGTCAGCAGTGACACCAACATCGAGTTCACGAAGCTG 2338 Query 98088 GACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGGGGCATTTTGGCCAGGTT 98143 ||||||||||| ||||||| ||| || || |||||||||||||| ||||| ||||| Sbjct 2339 GACTTGCCCGAACCGGTGGAGCCGGCGACGAGCAGGTGGGGCATCTTGGCGAGGTT 2394 >seq24208 Length=1566 Score = 185 bits (204), Expect = 6e-42 Identities = 221/298 (74%), Gaps = 3/298 (1%) Strand=Plus/Plus Query 97544 CGCCCCCACGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTC 97603 |||||||| || ||||| | |||||| ||| || | |||| |||||| || || Sbjct 431 CGCCCCCATCGGGAGGAACAGCCCGTCGCCCTGGCCGACCAGCTTCTCGGCGCCCGGCTG 490 Query 97604 GTCCAGGATCACCCGGCTATCGGTGAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCAC 97663 ||| ||||| |||||||| ||| ||| | |||||||| | ||| | |||||||| Sbjct 491 GTCGAGGATGACCCGGCTGTCGCCGAGGCTCGACGTGGCGAAGGCGAGTCGCGACGGCAC 550 Query 97664 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 97723 ||||| ||||| || || || || |||||||| || |||||||||||||| || ||||| Sbjct 551 GTTGGCCTTGATCAGACCCGTCACCACATCCACCGACGGCCGCTGCGTCGCGAGCACGAG 610 Query 97724 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 97783 || || ||||| |||||||| ||||| |||||| || || ||||||| || Sbjct 611 GTGGATGCCGGCGGCGCGCGCGAGCTGGGTGATGCGCACGATCGACTCCTCGACGTC--G 668 Query 97784 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGG 97841 | | | || ||||||| ||||| || || ||||||||||| |||| || ||||||| Sbjct 669 CGCGGCG-CGACCATCATCAGGTCGGCCAGCTCGTCGACCACGACCAGGAGGTAGGGG 725 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 98069 CATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGGGG 98128 |||||||||||||||||| |||||||| |||||||||| ||| || || |||||||| || Sbjct 1013 CATCGAGTTGATGAAGCTCGACTTGCCGGATCCGGTGGAGCCGGCGACGAGCAGGTGCGG 1072 Query 98129 CATTTTGGCCAGGTTC 98144 ||| || || |||||| Sbjct 1073 CATCTTCGCGAGGTTC 1088 >seq101977 Length=1174 Score = 152 bits (168), Expect = 4e-32 Identities = 189/254 (74%), Gaps = 5/254 (2%) Strand=Plus/Plus Query 97589 CTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGTGATGCTG-TGGCGAACG 97647 |||||| || || ||| ||||| || || || ||||| || || |||| ||||||| | Sbjct 3 CTCGGCGCCCGGCTGGTCGAGGATGACGCGACTGTCGGTCAGCGA-GCTGGTGGCGAAGG 61 Query 97648 AGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCT 97707 | || | || |||||||||| ||||| || || ||||| || || ||||||||||| | Sbjct 62 ACAGTCGGGAGGGCACGTTGGTCTTGATCAGACCGGTGACGACGTCGACGGAGGGCCGTT 121 Query 97708 GCGTCGCCAGGACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGT 97767 | || || ||||| || || || ||||| || || |||||||||| ||| ||||| || Sbjct 122 GGGTGGCGAGGACCAGGTGGATCCCGGCGGCCCGGGCCTTCTGGGTGATCCGGACGATCG 181 Query 97768 TGGCCTCGACTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTA 97827 | ||||||| || | | ||||| |||||| ||||| ||||| ||||||| | Sbjct 182 CGTCCTCGACGTC--CCGCGGAGCCG-TCATCATCAGGTCGGCGAGCTCGTCGATGATCC 238 Query 97828 CCACGATGTAGGGG 97841 ||| |||||| ||| Sbjct 239 CCAGGATGTACGGG 252 Score = 143 bits (158), Expect = 2e-29 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 97944 GGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACC 98003 |||| ||||| | ||| || ||||| ||||| || | ||| || ||||| || ||| Sbjct 415 GGCTGGGTGATGATCGGGGTCAGCAGGTGCGGGATGCCCTCGTACGGCGTGAGCTCGACC 474 Query 98004 ATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAA 98063 ||||| |||||||||| | | | |||| | || ||| || | |||| || Sbjct 475 ATCTTGGGGTCGATCAGCACCATCCGGACCTCGGCCGGCGAGGCCCGCTGCAGCAGCGAG 534 Query 98064 ACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGG 98123 |||||||||||||| | ||||||||||||||| || ||||||||||| |||||||||||| Sbjct 535 ACCAGCATCGAGTTCACGAAGCTGGACTTGCCGGAACCGGTGGCGCCGGCCACCAGCAGG 594 Query 98124 TGGGGCATTTTGGCCAGGTTCA 98145 || || | ||||||||||||| Sbjct 595 TGCGGGGTCTTGGCCAGGTTCA 616 >seq216206 Length=797 Score = 105 bits (116), Expect = 5e-18 Identities = 363/552 (66%), Gaps = 27/552 (5%) Strand=Plus/Plus Query 99705 GTCGAGCTTGGGGAAATCCGGCTCGCGGATCTCGTCAGGCCACCGCAGCGTCTGCAACGT 99764 ||||||| ||||| || | |||||| | |||||| ||| |||||||||||| | Sbjct 4 GTCGAGCCCCGGGAACTCGGCCTCGCGCACCTCGTCGTCCCAGAGCAGCGTCTGCAGCAG 63 Query 99765 CAGAACCTCATTCTTGCCCGTCACA-CGCAACACTGCCAGGTGCTCCTTGCTCCGCAGGG 99823 ||| ||||| | | ||| | || || ||| | | ||| ||||| |||| ||||| | Sbjct 64 CAGCACCTCGT-CGTGCAC-TCGCAGCGCCGC-CAGCCGGGTGCG--TTGC--CGCAGCG 116 Query 99824 TCACCCGTACGATGGCGACCTTG---TCGGCGTCAGAGAGCGTCCTAGCTAGCAGAGCGT 99880 | || ||||| || | || |||| || ||||| | ||||| |||| Sbjct 117 AGATGCGCACGATCGC---CGTGCGCTCGGTCTCCTCCAGCGTGCGGCGCAGCAGCGCGT 173 Query 99881 ACGGCCGCACCGATCCC---TCTGCGTTCAGGTAGTAGGGTTTGTCGAGCAGGATCGGGT 99937 ||| | || ||| | || | ||||||||| |||||| |||||| | Sbjct 174 ACGCCTTCATCGAGCTGGAATCCGGCGCCAGGTAGTAACTGCGGTCGAGGCGGATCGCAT 233 Query 99938 CGACCTCCCCGGCCGGCACGAACTCCACGACGTCAATCACCTTGTTGGTTTCGCTGGGCA 99997 | |||| | | | ||||||||||| |||||||| || | | || ||| |||| Sbjct 234 CCACCTGCTCCGAGGGCACGAACTCGACGACGTCGATGTCGCGGCTGCGCTCGGCCGGCA 293 Query 99998 GTTCTGCCAAGTCCTCATTGGTCAGTAGGGCGGTTTGCCCGTCGACCTCGAACACCTTGC 100057 | |||| || || ||| | || | | | || | || || | ||| | ||||| Sbjct 294 GCGACGCCAGATCGTCCTTGCTGAGCACGACCGTGCGGTCGCCGTCGTCGTAGGCCTTGT 353 Query 100058 CCAGATCGGC-CGTGTGG-ACCTGCTCCCCACACGTCTCACAGACCTTG---TGGTAGCG 100112 | ||| || || || || ||| || || |||| || |||| |||||||| Sbjct 354 C--GATGTGCTCGAAGGGCACGACCTCGCCGCAGATCTCGCA---CTTGCGCTGGTAGCG 408 Query 100113 AATCCGCCCGCCGTCCTGGACGTGCGCCAGATGGCCCTTCAGGTCGTGTTCCTCGGTGGC 100172 || ||||||| ||| | | ||||| || |||| | || |||||| || || ||||| Sbjct 409 GATGCGCCCGCTGTCGTCGTCGTGCACCTGATGCAGCGGCACGTCGTGGTCTTCCGTGGC 468 Query 100173 CGCGTACATCTTCACCGGCACGTTGACCAACCCGAAGTTGACCGCGCCTGTCCAAACTGC 100232 || | | | ||| || ||||||||||||| ||||||| | | || ||| |||| | || Sbjct 469 CGAGAAGAGCTTGACGGGCACGTTGACCAGCCCGAAGCTCAGCGAGCCCTTCCAGATCGC 528 Query 100233 TCTCATGCCTGC 100244 ||||| ||||| Sbjct 529 CCTCATTCCTGC 540 >seq50100 Length=1361 Score = 82.4 bits (90), Expect = 5e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 54227 GTTCCCCACCATCACGCCTCACGACCTCCGGCACACCTGCGCATCGCTGGCCATCTCCTC 54286 ||| || | | |||| || |||||||| ||||||||| || ||||| || ||||| | Sbjct 277 GTTTCCGATCGTCACTCCGCACGACCTGCGGCACACCGCTGCCTCGCTCGCTATCTCGGC 218 Query 54287 GGGGGCCAACGTCAAGGCCGTCCAGAACCTCCTGGGGCAC 54326 ||| || ||||||||||||||||||| | | || || ||| Sbjct 217 GGGCGCGAACGTCAAGGCCGTCCAGACCATGCTCGGACAC 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350275529377816