Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_026597.1 Length=63334 Score E Sequences producing significant alignments: (Bits) Value seq219746 336 9e-88 seq157980 138 5e-28 seq125305 102 3e-17 seq20465 100 1e-16 >seq219746 Length=1062 Score = 336 bits (372), Expect = 9e-88 Identities = 573/835 (69%), Gaps = 39/835 (5%) Strand=Plus/Plus Query 44235 CCCGGAGTGCACGAATCACTCGGTGGCCAAGGGCCGAAAGCGCGTCGACTCGCAGCCCGA 44294 |||| |||||| |||||||||| ||| ||||| ||||||| |||| || ||||| Sbjct 18 CCCGTCGTGCACCCATCACTCGGTCGCCCAGGGCATCAAGCGCGCCGACAAGCGCCCCGA 77 Query 44295 TCTGTTCGGCGAGGTGCTGCCCGACGCGGCGGCTGAGCGGTCCCGCGCCACGATGTGGGA 44354 | ||| |||||| ||||||||| || || || || || || || ||||||||||| Sbjct 78 CCCCAACGGGGAGGTGTTGCCCGACGACGCCGCCGAACGCTCGCGGGCGACGATGTGGGA 137 Query 44355 CGTGCCCCGGTTCGCCGAGGCGCATCGCTACCAGGCCGTCATCGTCGAGAACGTCGTGGA 44414 ||| ||||||||||||| || | |||| | || ||||||| ||||| || || Sbjct 138 CGTCGTCCGGTTCGCCGAGTACCACCAGTACCGATCAATCGTCGTCGAAAACGTTGTCGA 197 Query 44415 CGCGTGGCACTGGCAGCCGTTCCAGGCGTGGCTGATGGCGATGGACTCGCTGGGCTACGA 44474 || || ||||| | |||| | ||||||| |||| |||| | ||||||||| | Sbjct 198 CGTGTATTTCTGGCCGTTGTTCGCGCCGTGGCTCGCCGCGACGGACGCCCTGGGCTACAA 257 Query 44475 GCACCACATCGTGTTCCTGAACTCGATGCACGCGCAGGCGTTCGGGCCGGGTGCGCCGCA 44534 ||| | ||||||| || |||||||||||||||||| |||||| | | || || || Sbjct 258 CCACGAGATCGTGTGGCTCAACTCGATGCACGCGCAGCTGTTCGGTCAGCCGGCCCCTCA 317 Query 44535 GTCACGGGACCGCATGTACGTGGTGTTCTGGCGCAAGGGCAACCAGCGTCCCGATGTTGA 44594 ||| ||||| | || || || || Sbjct 318 ATCAAGGGACAGGATCTATGTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------- 370 Query 44595 CCGGCTGACGCGGCCCGAGGCGGTGTGCCCGAAGTGCGGGCAGGTCCGCGTGATGCAGTC 44654 || || || ||||||||| ||| || | |||| | || || | Sbjct 371 --------CGTGG------GCTGTGTGCCCGTCGTGTGGCCCTGTCCAGTCGGTGAAGAC 416 Query 44655 GTGGAAGCGGCCGGAGCGGGCCCCATGGGGCCGCTACCGCGCCCAGTACGTGTACCGGTG 44714 |||||||| |||||||| | |||||||||||||||||||||||| || | || Sbjct 417 CTGGAAGCGCCCGGAGCGT---CAGTGGGGCCGCTACCGCGCCCAGTACACGTTCTCCTG 473 Query 44715 CCCGT-CGAC-CACGTGCCGCAACCAGGTCTTGGAGCCGCTGTTCCGTCCGGCCGCCGAG 44772 |||| || | || | || || || || |||| || | || || ||||| || Sbjct 474 CCCGAACGGCTCATGCGCGGCCAC-AG----TGGAACCCGACTGGCGACCCGCCGCAGAC 528 Query 44773 ATCATCGACTGGTCACTGCTGGGGCAGCGCATCGGCGACCGGGACAAA---CCGCTGGCC 44829 |||||||||||||| |||| || |||||||| ||||| |||| ||||||||| Sbjct 529 ATCATCGACTGGTCGCTGCCCGGCACCCGCATCGGTGACCG---CAAACGCCCGCTGGCC 585 Query 44830 GAGAAGACGATGGCGCGCATCCGGGCCGGCATCGAGCGGTACTGGGCGCCGTTCATCACC 44889 |||||||| ||| | || |||| |||||| ||||| || ||||||| |||||| ||||| Sbjct 586 GAGAAGACCATGACCCGTATCCAGGCCGGGATCGACCGCTACTGGGGACCGTTCCTCACC 645 Query 44890 GAGCACCGCCACGAGTACCGAGTCCGCGGCGTCGATGTGCCGTTGCAGACCGTGGCGGCG 44949 |||||||||||||||||||| ||||||| | || |||| ||||||||||||| || Sbjct 646 GAGCACCGCCACGAGTACCGCGTCCGCGACATCACCCGGCCGATGCAGACCGTGGCCGCC 705 Query 44950 TCGGGGAATCACTTCGGCCTGGCGGTGCCGGTCGAAGGCCGCGACGG-AAAGCAGGCCGT 45008 || || || ||||||||||| || | || ||||| || ||||| || ||||| |||| | Sbjct 706 TCAGGCAACCACTTCGGCCTCGCCATCCCCGTCGAGGGGCGCGAGGGCAAAGC-GGCCCT 764 Query 45009 TCCGGTCGACCAGCCCGCGCGCACGATGACGACTCGAAACGAGACGGGTCTGGCG 45063 || || || | ||||| ||||| || || || ||||| | |||||| Sbjct 765 GCCAATCTCGGCACCGGTACGCACCATGACCACCCGCAATGAGACCGCCCTGGCG 819 >seq157980 Length=2738 Score = 138 bits (152), Expect = 5e-28 Identities = 124/153 (81%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 38997 CTACGACACCGAGTTTCTCGAGGACGGCCACACCATCGAGCTGATCTCGATCGGCATCGT 39056 ||||||||||||||| ||||| |||||| | ||| |||| |||||||||||||||||||| Sbjct 694 CTACGACACCGAGTTCCTCGAAGACGGCAAGACCGTCGACCTGATCTCGATCGGCATCGT 635 Query 39057 CTGCGAGGACGGCCGCGAATACTACGCCGTCAACAGCGACATGCCGCAC---GACCGGAT 39113 | ||| || |||||||| ||||||||| ||||| |||| || | || ||||| || Sbjct 634 CGCCGAAGATGGCCGCGAGTACTACGCCATCAACTCCGAC--GCTG-ACTGGGACCGCAT 578 Query 39114 CAGCAAGAACGACTGGCTGATGAAGAACGTCGT 39146 | | || |||||||||| ||| || ||||||| Sbjct 577 CCGGAAAGACGACTGGCTCATGGAGCACGTCGT 545 Score = 107 bits (118), Expect = 8e-19 Identities = 259/385 (67%), Gaps = 24/385 (6%) Strand=Plus/Minus Query 49824 GGCACCCGCACCGTCGCCGACGTCGAATCGTTCATCGCCGAGCTCGCCCGC----AGGCC 49879 ||||| |||| |||| ||||||||| |||||| || ||||||| |||| || | Sbjct 1609 GGCACTCGCATCGTCACCGACGTCGTGTCGTTCGAGGCTGAGCTCGACCGCTACAAGCTC 1550 Query 49880 GCTCACCGACATCGGC-ACGCTGTGGGGCAACGCGCAACGCGGATCAC-TGCAGGCGGTC 49937 | | | ||| || | ||||||||||| ||| | ||| || | | || ||| || Sbjct 1549 GATGA--GACCGCGTCGACGCTGTGGGGTGACGAG-AACAAGGGCCGCGTGGTCGCGATC 1493 Query 49938 TACAACGACCACG---ACGAGACCGACGGCAACGCCGGGTGGCGTGAC---GACATCCTG 49991 ||||||||||||| ||| ||||||| || |||| || || |||| || Sbjct 1492 TACAACGACCACGTGAACGCCGCCGACGGTGTCGACGGGCACGGTCACCGCGACAACCGT 1433 Query 49992 GCACTCACGCTGCAGGAGGATCC------GGACTGGCACGCGTGGCACGCCCTGTCCGGA 50045 || ||||||| ||| ||||||| || |||||| | ||||| Sbjct 1432 ---CTGCAGCTGCAGCTCCGTCCCGACGAGGACTGGGCGGCCTGGCACAAGATTTCCGGG 1376 Query 50046 AAGTACTTCGCGCAACCCGAGTTCGGCGACCTGGTGGAGGAACTTCGCCACACGATCGTG 50105 | |||| || | || | |||||||||||| | | ||||| || | ||||| | || Sbjct 1375 AGGTACATCCCTCAGGCGGAGTTCGGCGACATCATCGAGGACCTCCTGCACACCGTGGTC 1316 Query 50106 TCCCCGGACCAGGCCGATCTGTTGGAGATCATCGACAGCATCCGGGCGTCGACCAAGGGG 50165 || || ||||||||||| || | ||| |||||||| |||||| | ||| || ||| Sbjct 1315 TCACCCGACCAGGCCGACCTCGTCGAGGTCATCGACTCCATCCGCACCACGAGCAGCGGG 1256 Query 50166 GAGTTCGAGTCGAGCATCACCCGCG 50190 | ||||||||| | |||| ||||| Sbjct 1255 GTGTTCGAGTCCACCATCCGCCGCG 1231 >seq125305 Length=4407 Score = 102 bits (112), Expect = 3e-17 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 38997 CTACGACACCGAGTTTCTCGAGGACGGCCACACCATCGAGCTGATCTCGATCGGCATCGT 39056 ||||||||||||||| |||||||||| | |||||||| ||| ||||||||||| |||| Sbjct 2005 CTACGACACCGAGTTCATCGAGGACGGGCGGACCATCGATCTGGTCTCGATCGGCGTCGT 2064 Query 39057 CTGCGAGGACGGCCGCGAATACTACGCCGTC 39087 | ||||||||| || || | |||||||||| Sbjct 2065 CGCCGAGGACGGTCGGGAGTTCTACGCCGTC 2095 >seq20465 Length=3145 Score = 100 bits (110), Expect = 1e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33062 TGGCGCTCGCTGGCACTGGTGATCAAGGCCAAGCTGGAAGCCGTCGAGTCCGGGATCGTC 33121 ||||| |||| | ||| || | ||||| |||||||| |||||||| ||||| |||||| Sbjct 2030 TGGCGGGCGCTCTCGCTGATGGTGAAGGCGAAGCTGGAGGCCGTCGACTCCGGCATCGTC 2089 Query 33122 ACCTTCGACGCTGAGTTCCTCGCACACATCGTGCTTCCCGACGGCCGCACCGT 33174 |||||||| | |||||| | ||||||||| | |||||||||||||| || Sbjct 2090 ACCTTCGAGGAGGAGTTCGCGTCCCACATCGTGATGCCCGACGGCCGCACGGT 2142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201860019229085