Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_026606.1 Length=71200 Score E Sequences producing significant alignments: (Bits) Value seq248049 232 3e-56 seq136878 215 2e-51 seq153771 156 2e-33 seq226360 134 6e-27 >seq248049 Length=1043 Score = 232 bits (256), Expect = 3e-56 Identities = 265/356 (74%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 62724 ACATGGCCGGTGAAACCACCATAACGGTGATAGGCAATCTGACGAACGATCCCGAATTAC 62783 ||||||| || || |||| ||| |||||| | ||||| |||||| ||||||||| | | Sbjct 551 ACATGGCAGGCGACACCATCATCACGGTGGTCGGCAACCTGACGGCCGATCCCGAGCTGC 610 Query 62784 GGTTCACGCCGTCCGGCAGCCCGGTGGCCAACTTCACCATTGCCAGCACCCCGCGCACGT 62843 | ||||| | |||||| | || || ||||||||| | || ||||| || ||| Sbjct 611 GCTTCACCGCCTCCGGCGCGGCCGTTGCGAACTTCACCGTCGCATCGACCCCCCGGACGC 670 Query 62844 TCGACCGGCAGAGCAACGAGTGGAAGGACGGGGAAACCCTGTTTTTGCGCGCGAGTATCT 62903 ||||||| ||| ||||||||||||||| || |||| || ||||| | |||| Sbjct 671 TCGACCGCACCAGCGGCGAGTGGAAGGACGGCGAGGCCCTCTTCCTGCGCTGCAACATCT 730 Query 62904 GGCGCGACCCCGCGGAGAACGTGGCAGAGTCCCTGACCAAGGGCATGCGCGTGATTGTGT 62963 |||| | | || |||||||| | ||||| || ||| ||| ||||| || || Sbjct 731 GGCGGCAGGCTGCCGAGAACGTCACGGAGTCGCTCACCCGCGGCTCCCGCGTCATCGTCA 790 Query 62964 CCGGGCGGCTCAAGTCCCGCAGCTACGAGACCAAGGAAGGCGAAAAGCGCACGGTCATTG 63023 |||| ||||||||| ||||||| |||||||||||||||||| |||||||| ||||| | Sbjct 791 CCGGCCGGCTCAAGCAGCGCAGCTTCGAGACCAAGGAAGGCGAGAAGCGCACCGTCATCG 850 Query 63024 AGCTTGAGGTGGACGAAATTGGCCCGTCTTTGCGCTATGCCAACGCCAAGGTGAAC 63079 |||| ||||| ||||| || ||||| || |||| || || | ||||||||| ||| Sbjct 851 AGCTGGAGGTCGACGAGATCGGCCCCTCGCTGCGGTACGCGACCGCCAAGGTCAAC 906 >seq136878 Length=1830 Score = 215 bits (238), Expect = 2e-51 Identities = 265/360 (74%), Gaps = 4/360 (1%) Strand=Plus/Minus Query 62724 ACATGGCCGGTGAAACCACCATAACGGTGATAGGCAATCTGACGAACGATCCCGAATTAC 62783 |||||||||| || || | | | || || || || || ||||| ||||||||| | | Sbjct 407 ACATGGCCGGCGACACGATCCTCACCGTCATCGGGAACCTGACCGCGGATCCCGAACTGC 348 Query 62784 GGTTCACGCCGTCCGGCAGCCCGGTGGCCAACTTCACCATTGCCAGCACCCCGCGCACGT 62843 | ||||| |||||||| ||||||||||||||||| |||| ||| ||||| | || Sbjct 347 GTTTCACCCCGTCCGGTGCGGCGGTGGCCAACTTCACCGTTGCGTCCACGCCGCGGATGT 288 Query 62844 TCGACCGGCAGAGCAACGAGTGGAAGGACGGGGAAACCCTGTTTTTGCGCGCGAGTATCT 62903 ||||||| |||| |||||| ||||| ||||| || | ||||| |||| || |||| Sbjct 287 TCGACCGTCAGACCAACGAATGGAAAGACGGCGAGGCACTGTTCATGCGGTGCAGCATCT 228 Query 62904 GGCGCGACCCCGCGGAGAACGTGGCAGAGTCCCTGACCAAGGGCATGCGCGTG--ATTGT 62961 |||| || | || ||||||||||| ||| ||| |||||||| ||| |||| || || Sbjct 227 GGCGGGAGGCGGCCGAGAACGTGGCGGAGAGCCTCACCAAGGG--TGCTCGTGTCATCGT 170 Query 62962 GTCCGGGCGGCTCAAGTCCCGCAGCTACGAGACCAAGGAAGGCGAAAAGCGCACGGTCAT 63021 ||| || ||||||||| ||| |||||| ||| || || || ||||||||||| | Sbjct 169 GTCGGGTCGGCTCAAGCAGCGCTCCTACGAAACCCGCGAGGGTGAGAAGCGCACGGTGGT 110 Query 63022 TGAGCTTGAGGTGGACGAAATTGGCCCGTCTTTGCGCTATGCCAACGCCAAGGTGAACCG 63081 ||||| ||||| || || | || || || || || || | ||||||||| ||||| Sbjct 109 CGAGCTCGAGGTCGAGGAGGTCGGTCCCTCGCTGAAGTACGCGACCGCCAAGGTCAACCG 50 >seq153771 Length=831 Score = 156 bits (172), Expect = 2e-33 Identities = 231/325 (71%), Gaps = 2/325 (1%) Strand=Plus/Minus Query 62769 ACGATCCCGAATTACGGTTCACGCCGTCCGGCAGCCCGGTGGCCAACTTCACCATTGCCA 62828 |||| ||||| | ||||||||||| || ||| | | || ||||||||| ||| ||| Sbjct 403 ACGACCCCGAGCTGCGGTTCACGCCCTCGGGCGCCGCAGTCGCCAACTTCCGCATCGCCT 344 Query 62829 GCACCCCGCGCACGTTCGACCGGCAGAGCAACGAGTGGAAGGACGGGGAAACCCTGTT-T 62887 |||||||||||||||| |||| |||| |||||| ||| ||||||| || | |||| Sbjct 343 CCACCCCGCGCACGTTCAACCGTCAGACCAACGACTGGGAGGACGGTGAGGGCATGTTCC 284 Query 62888 TTGCGCGCGAGTATCTGGCGCGACCCCGCGGAGAACGTGGCAGAGTCCCTGACCAAGGGC 62947 | | || | | ||||| | | || |||||||| || |||||| || ||| Sbjct 283 TCACCTGCTCG-GTGTGGCGTCAGGCGGCCGAGAACGTCGCGGAGTCCTTGCAGCGCGGC 225 Query 62948 ATGCGCGTGATTGTGTCCGGGCGGCTCAAGTCCCGCAGCTACGAGACCAAGGAAGGCGAA 63007 |||||||| | || || ||||||||||| |||| |||||||||| || ||||| Sbjct 224 ATGCGCGTCGTCGTCCAGGGACGGCTCAAGTCGCGCACCTACGAGACCCGCGAGGGCGAG 165 Query 63008 AAGCGCACGGTCATTGAGCTTGAGGTGGACGAAATTGGCCCGTCTTTGCGCTATGCCAAC 63067 |||||||| ||| | ||| | ||||| || || | || ||| || | |||| Sbjct 164 AAGCGCACCGTCTTCGAGATCGAGGTCGAGGAGGTCGGGCCGAGCCTGAAGTTCGCCACG 105 Query 63068 GCCAAGGTGAACCGGACCCAGCGCA 63092 |||||||| ||||| || ||||| Sbjct 104 GCCAAGGTCAACCGCGCCTCGCGCA 80 >seq226360 Length=376 Score = 134 bits (148), Expect = 6e-27 Identities = 242/356 (68%), Gaps = 20/356 (6%) Strand=Plus/Plus Query 62727 TGGCCGGTGAAACCACCATAACGGTGATAGGCAATCTGACGAACGATCCCGAATTACGGT 62786 ||||||| || || | ||| |||||| | ||||| |||||| ||| || || | || | Sbjct 7 TGGCCGGCGACACGATCATCACGGTGGTCGGCAACCTGACGGCCGACCCGGAGCTGCGCT 66 Query 62787 TCACGCCGTCCGGCAGCCCGGTGGCCAACTTCACCATTGCCAGCACCCCGCGCACGTTCG 62846 ||||| | ||| | | ||||| ||||||||||| ||||||||||| |||| Sbjct 67 ACACGCAGAGCGGGCTCGCCGTGGCGAACTTCACCATCGCCAGCACCCCCCGCANN---- 122 Query 62847 ACCGGCAGAGCAACGAGTGGAAGGACGGGGAAACCCTGTTTTTGCGCGCGAGTATCTGGC 62906 |||||||||||||| || ||||||| | || || ||||| Sbjct 123 --------------GAGTGGAAGGACGGCGAGGCCCTGTTCCTCCGGGCCTCCTGCTGGC 168 Query 62907 GCGACCCCGCGGAGAACGTGGCAGAGTCCCTGACCAAGGGCATGCGCGTGATTGTGTCCG 62966 | || ||| ||| |||| || | ||| ||||||||||||| ||||| || | | | Sbjct 169 GTGAGTTCGCCGAGCACGTCGCCGGGTCGCTGACCAAGGGCAGCCGCGTCATCGCGCAGG 228 Query 62967 GGCGGCTCAAGTCCCGCAGCTACGA-GACCAAGGAAGGCGAAAAGCGCACGGTCATTGAG 63025 | || || ||| ||| |||||| |||| || ||| | |||||||| | || ||| Sbjct 229 GCCGCCTGAAGCAGCGCTCCTACGACGACC-GCGATGGCAACAAGCGCACCGCGATCGAG 287 Query 63026 CTTGAGGTGGACGAAATTGGCCCGTCTTTGCGCTATGCCAACGCCAAGGTGAACCG 63081 || ||||| ||||| || |||||| | || ||||| | |||| || | | ||| Sbjct 288 CTCGAGGTCGACGAGATCGGCCCGAGCCTCCGTTATGCGACCGCCCAGATCACCCG 343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 226946217368843