Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq13366 614 7e-171 seq7533 98.7 1e-15 seq56708 89.7 7e-13 >seq13366 Length=6323 Score = 614 bits (680), Expect = 7e-171 Identities = 1124/1629 (69%), Gaps = 23/1629 (1%) Strand=Plus/Plus Query 68354 TTATTTTATCCTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGAT 68413 |||||||| | || || | ||||||||||| | | ||| |||||||| |||| | Sbjct 494 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 553 Query 68414 AGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGG 68473 ||||||| || ||||| | || | |||| ||| |||||| || || ||||| Sbjct 554 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 613 Query 68474 AATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTC 68533 ||| | || | || | ||| || || | ||||||||||| || || |||||||||| Sbjct 614 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 673 Query 68534 TATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCT--TAAAAAT 68591 |||| || ||||| | ||| | || | | ||| ||||| | || | || |||| Sbjct 674 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 733 Query 68592 CTGTTTGATATCATCTGGAAGGCT---CGTATTTTGAATGGATCCACCATCGGATATAAT 68648 || || || || | |||| | | | ||| || |||||| | | ||||||| Sbjct 734 CTCTT--ATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAAT 791 Query 68649 TATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGG 68708 | ||| || || || |||| |||||| | | || ||| | | || ||||| | Sbjct 792 AAGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATG 851 Query 68709 ATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGG 68768 || |||| ||||||| |||||||| ||||| | ||||||||| ||| | || Sbjct 852 GTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGG 911 Query 68769 TTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCAC 68828 ||| | ||||||| | || || |||||||| ||||| || ||||| |||||||| || | Sbjct 912 TTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTAT 971 Query 68829 CAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCA 68888 ||||| | ||| | | ||||||| || || || ||||| || ||| ||||| Sbjct 972 CAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCCA 1031 Query 68889 AAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGA 68948 ||| || | || | ||| | ||| || || || || || | ||||| | Sbjct 1032 AAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGC-TGGAC 1090 Query 68949 TCCATT-ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATG 69007 ||| || |||||| || | ||||| | |||||||| ||||||||| || ||||||| Sbjct 1091 TCCCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAATG 1150 Query 69008 CACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGA 69067 |||| |||||||||||||| || || | | ||||||| | ||||| ||| ||| Sbjct 1151 CACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCGT 1210 Query 69068 ATGGATAATGT-AAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 | |||| | | | | | ||| |||||||||| |||||||| |||||||| |||||| Sbjct 1211 A-AGATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGT 1269 Query 69127 CTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 69186 ||||||||| |||||||| ||| || || || | ||||||| |||||| ||| |||| | Sbjct 1270 CTATGTCTCATATTTGAAGTTTTTGCCTCAGGGACAGGATAAAAATTAACATCAATAACT 1329 Query 69187 TTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGT 69246 || || | |||| | ||| | || | || |||| ||| ||||| ||||| Sbjct 1330 TTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCTG 1389 Query 69247 CCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCA--T 69304 || | ||||||||| || ||||||| || || || || || ||||| || ||| | Sbjct 1390 TTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCT 1449 Query 69305 TAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGAT 69364 | | || ||||| | | ||| || || ||||| |||||||| ||||| || |||| Sbjct 1450 TCTGAAGTG--TATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGAT 1507 Query 69365 TTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTT 69424 ||| |||||||||||| ||||||| || ||||| || | || | || |||||||| | Sbjct 1508 TTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCT 1567 Query 69425 CAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTAC-GGTCTTGTAA 69483 | | || | ||| ||||| || ||||| | || || | | | | || || || ||| Sbjct 1568 CCACTTGGGCTTCTATAATTGACTTCCATA--ACTCTTG-AGCTCTGACTTGTTTTATAA 1624 Query 69484 --CGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACA-TCA 69540 || || |||| |||||||| | |||||| ||| ||||| ||| || || || ||| Sbjct 1625 ATCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCT-CCAAAGCAGTCA 1683 Query 69541 TCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGT 69600 | | |||||||| |||| |||||||| | ||| || ||||| | | |||| | Sbjct 1684 GCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTT 1743 Query 69601 TTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCA 69660 |||||||| ||||| || ||||| | ||| ||| || ||||| | ||| ||||||| Sbjct 1744 TTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCC 1803 Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || ||||| || || || | ||| | || || | ||||| | |||||| || |||| | Sbjct 1804 TTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCAAGGCTCTAAA 1863 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 || || || | | || || ||||| ||||| || ||||||| ||||||||||| || Sbjct 1864 TAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTG 1923 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 ||||| ||||||| ||| || | | |||||| || ||||| || |||| || ||| Sbjct 1924 TTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATGTAA 1983 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 || || | || | || || |||||| || || || |||||| ||| Sbjct 1984 GAACCCTGAGCTCTGATGCAATGTGTATGTAAACCTATGCCACCAGCAGATTTAGAAATT 2043 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960 | ||||| |||| || || ||| | ||||| || |||||||| ||| |||| | | Sbjct 2044 AATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTCATAGCTATA 2103 Query 69961 AGAAAACAG 69969 || |||||| Sbjct 2104 AGGAAACAG 2112 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 70135 TTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTAT 70194 ||||| ||||| ||||||| |||||| |||||| |||||| || ||||||||||||||| Sbjct 2610 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTAT 2669 Query 70195 GAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTT 70244 ||| ||||| || |||| ||| |||| | || ||| ||||| | ||| Sbjct 2670 TTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2719 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 70345 ttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCA 70404 || || || || || |||||||| ||||| ||||||||||| || | ||| ||||| || Sbjct 3380 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCC 3439 Query 70405 GGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTT 70464 ||||| | ||| || ||||||||||||||| ||||||| |||| | || |||| Sbjct 3440 GGATGATCTGTGGTCTTAGTAGCTGCTATTTCTGCAGCTAGATTATCAAGCTCAGCAGTT 3499 Query 70465 GTAACTCCGTTATATA 70480 || || || ||||| Sbjct 3500 GTTACACCAGAATATA 3515 >seq7533 Length=2710 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 || |||| ||||||||||| || ||||||||||| || || || ||||| ||||| | | Sbjct 680 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 621 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTT 40211 |||||||| ||||||| ||||| || |||||||| | | ||||||| Sbjct 620 CATATATCTGGATATTGGATTGGGAATATAACAAAACGTCTAGGATTTT 572 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| ||| ||| | ||| ||| || || | ||| ||||| ||||| || |||| Sbjct 1859 CCTCATCCCTAGAAATAAGTTCATTACTGAAAGTCAATCCGGGCATCAGACCTCGTTTTT 1800 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||||||||| | |||||| || || || || || || || ||||||||||| | Sbjct 1799 TCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACTGCTGCAAAAG 1740 Query 39759 CAACAAGTCTCTCTCCGTAACTTG-TATCATTATG--TATCCACTTCTGTGCCCAATCAG 39815 ||| | | ||||| | | | | || | || ||||||| ||||| || | Sbjct 1739 CAATTATACGTTCTCCAAATGTAGCTGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTG 1680 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | |||||||| ||||| || | ||||| || ||||| || Sbjct 1679 CCTTCTTCTTAACACATGGTAGAGTTTCAATTGCATTGAA 1640 >seq56708 Length=5257 Score = 89.7 bits (98), Expect = 7e-13 Identities = 245/370 (66%), Gaps = 9/370 (2%) Strand=Plus/Plus Query 162494 TTATGACCCC--TATTAATCCTATGCTAGCAGAATCATGCGATTCCGTTAACAAGGCATT 162551 ||||||| || ||||| || ||| |||||||| | ||| | || ||| | | ||| | Sbjct 2030 TTATGACTCCAGTATTA--CCGATGTTAGCAGAAGCTTGCAAGTCAGTTGAAATGGCTAT 2087 Query 162552 TAAAAAATTTCCATCTGGGATGTTTGCAGAAGTCAAATATGATGGTGAACGAGTGCAAGT 162611 ||||||| |||| ||| |||||| | || | ||||||||||| ||||| || ||||| Sbjct 2088 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 2147 Query 162612 TCATAAAAACAATAACAAGTTTGCGTTCTTTAGTAGAAACATGAAACCCGTTTTACAACA 162671 |||||||| || |||| | ||| | | | ||||| || | || Sbjct 2148 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 2207 Query 162672 CAAAGTTGATTATCTAAAAGAATACCTTCCCATAGCATTCAAAAAAGCTACAT-CTATTA 162730 ||||||| | || | ||||| || | |||| |||||| |||| | || | | | Sbjct 2208 CAAAGTTAGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAG-GAGATGATTTGA 2266 Query 162731 TCTTGGATTCTGAAATTGTTCTAGTCGACGAACATAATG---TACCACTTCCGTTTGGAA 162787 |||||||| ||||| | || | || || | ||| || |||| | || || || | Sbjct 2267 TCTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGGTA 2326 Query 162788 GTTTAGGAATACATAAAAAGAAAGAATATAAAAACTCTAATATGTGTTTGTTCGTGTTTG 162847 ||||| || || ||| | ||||| |||| | || | | || || | | |||| Sbjct 2327 CATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTG 2386 Query 162848 ATTGTTTATA 162857 |||| ||||| Sbjct 2387 ATTGCTTATA 2396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684529665612120