Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq13366 156 5e-33 seq170880 111 2e-19 >seq13366 Length=6323 Score = 156 bits (172), Expect = 5e-33 Identities = 477/729 (65%), Gaps = 24/729 (3%) Strand=Plus/Plus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 |||||| |||| || |||| ||| | |||||||| ||||| | || || | ||||| Sbjct 882 TCTTCTTTGGTAAATATTTGATGTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTG 941 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTT 110817 ||| || ||||| || ||||| || || ||||| ||| || || | ||| | | || Sbjct 942 TGCAGTAGAGGCAGTCGGCATAGGAGCTATCAATAGAGAATTGCGCAAACCATGTT--TT 999 Query 110818 G--ATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTT---CCCAC 110872 | || ||| || || ||| ||||||| | || | || | || ||||| Sbjct 1000 GCTATCTTTTCTTTAAGGACAGCCCAGTCCCAA---AGGTCTGTAGGAGTTTTGTCCCAC 1056 Query 110873 ATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCT 110932 || ||| |||| || | |||||| || ||| || | | | || || | |||| Sbjct 1057 ATATCATACTGGAGGATACCTTGGCTTGCTGGACTCCCTTGATATGTGCTGTATGCACCT 1116 Query 110933 TGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATA 110992 | |||||| |||||||| || || || | | | | ||| || |||||||| || Sbjct 1117 TCTTTTTCAGCTAATTCACAACTAGCTTCTAATGCACCATAATAAATTGTTTCAAATATT 1176 Query 110993 CGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATAC 111051 | ||| | | |||| || || | | || || ||| | ||| | Sbjct 1177 TGTTGATTGAGAAGTATTGCTTTCTCACTTTCGTAAGA-TATTCTCATCAACACAAACGC 1235 Query 111052 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 111111 ||| || | || |||||||| | |||||||||||| |||| |||||| || || || Sbjct 1236 ATCTGCCATGCCCTGAACACCAATACCAATAGGTCTATGTCTCATATTTGAAGTTTTTGC 1295 Query 111112 AGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT 111168 |||| || ||||||||||| ||||| ||| ||||| ||||| || ||||| Sbjct 1296 ---CTCAGGGACAGGATAAAAATTAACATCAATAACTTTGTTTAAATTTTGAGTTACAAT 1352 Query 111169 CTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTT 111228 |||||||||||| | | ||||| | ||| ||| || | | |||| ||| || | Sbjct 1353 CTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCTG---TTATTTTCA---ACAAACAT 1406 Query 111229 TGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAA 111288 ||| || || || || | ||||| || ||| ||||| | ||||| | | Sbjct 1407 GTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCAC 1466 Query 111289 AATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTT 111348 || || || || | ||| || ||||| || || | ||| ||||| |||||||| | Sbjct 1467 AACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCT 1526 Query 111349 GTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAAT 111408 ||| || |||||||| || | |||||| || || || |||||| || | || | ||| Sbjct 1527 GTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTCCACTTGGGCTTCTATAAT 1586 Query 111409 AGCCTTCCA 111417 | |||||| Sbjct 1587 TGACTTCCA 1595 >seq170880 Length=1133 Score = 111 bits (122), Expect = 2e-19 Identities = 325/495 (66%), Gaps = 7/495 (1%) Strand=Plus/Minus Query 111661 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACG---CCCAGC 111717 ||| || | |||||| |||||||| |||| |||| | ||| || |||| | Sbjct 1086 GATGTCGGGGTGCCACGGCTCAAGGTAGATGGCGAACGCACCCGGGCGCTTGTTCCCACC 1027 Query 111718 TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGA 111777 || | |||||||| || ||| ||| || ||||| ||||| || | || || | || Sbjct 1026 CTGGTCGACATAGCGGGCAGTGTTGTTGAAGACGCGGAGCATGGGCACGATGCCGTTCGA 967 Query 111778 TTGACCATTTGTCCCCCGAATACGAGATTTATT-GGCTCTCACATCATGGATGTGCATCC 111836 | || ||||| || | || || || ||| | | | || ||||| | | Sbjct 966 GTATCCGTTTGTGCCACCGATGT-AGCTTCCGGAGGCACGGATGTTGTGAATGTGGAGGC 908 Query 111837 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 111896 | ||||| || || ||| ||||| || ||| | | || || | ||||| || | Sbjct 907 CGATACCGCCGGCGGTCTTGGAGATCATGGCGCACGTCTTCAGGGTGTCGTAGATGCCCT 848 Query 111897 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTAC 111956 ||| ||||| ||||| | || | ||||||||| | | ||| || || || | Sbjct 847 CGATCGAGTCGTCCTTCATCGCCACGAGGAAGCAAGACGCAAGCTGGGGGTGGGGCGTGC 788 Query 111957 CAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG-GGACATCTTGTCGTAT 112015 |||||||||||||||| || | || || |||| ||| || |||||| | || ||| Sbjct 787 CAGCATTGAAGAGGGTGGGCGAGGCATGGGTGAAG-TACTTTTCGGACATGTAGTTGTAC 729 Query 112016 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATG 112075 ||||| | || | || | |||||||||||||| ||||| ||||||| |||| Sbjct 728 GTCTCGATCGCACGCGTGACGTTGTTGCCGTGGATGCCGATAGCGACGCGCATGAGCATG 669 Query 112076 TACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTT 112135 | ||| ||| || || | ||| |||| || |||| ||| | ||||||||| Sbjct 668 TGCTGCGGGCGCTCGGCGACGCGGCCGTCGATGCGGAGAAGGTAGGACCGCTCAAGGGTC 609 Query 112136 TTGAGACCAAAGTAA 112150 |||| ||||||||| Sbjct 608 TTGAAGCCAAAGTAA 594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625856787616800