Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq13366 123 3e-23 seq170880 89.7 6e-13 >seq13366 Length=6323 Score = 123 bits (136), Expect = 3e-23 Identities = 469/725 (65%), Gaps = 36/725 (5%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || ||||| | || | || ||||| | ||| |||| || | ||||| || || ||| Sbjct 892 TAAATATTTGATGTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAG 951 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT-TTTCCCTAATGCGTTC 118300 || || ||||| || || || | || || || | ||| | ||| ||| | ||| Sbjct 952 GCAGTCGGCATAGGAGCTATCAATAGAGAATTGCGCAAACCATGTTTTGCTA-TCTTTTC 1010 Query 118301 CTTGAG---AGC---GTCCCA---GTC-GTAGTTGAGCTTTGTCTCCCCCTGCCACATAT 118350 || || ||| |||||| ||| |||| ||| |||||| |||||||| Sbjct 1011 TTTAAGGACAGCCCAGTCCCAAAGGTCTGTAG--GAGTTTTGTC--------CCACATAT 1060 Query 118351 CAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAA 118410 || ||||||||||||||||| ||||| || | | |||| |||| || || Sbjct 1061 CATACTGGAGGATACCTTGGCTTGCTGGACTCCCTTGATATGTGCTGTATGCACCTTCTT 1120 Query 118411 CCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAG 118470 || || ||||| | || || || | || | | ||| ||||||||||| || | Sbjct 1121 TTTCAGCTAATTCACAACTAGCTTCTAATGCACCATAATAAATTGTTTCAAATATTTGTT 1180 Query 118471 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCG 118530 ||| | | || | || || | | | || ||| | ||| |||| | Sbjct 1181 GATTGAGAAGTATTGCTTTCTCACTTTCGTAAGATATTCTCATCAACACAAACGCATCTG 1240 Query 118531 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCT 118590 | | || || ||||| | ||||| || | |||||||||||| || | || || Sbjct 1241 CCATGCCCTGAACACCAATACCAATAGGTCTATGTCTCATATTTGAAGTTTTTGC---CT 1297 Query 118591 CC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTG 118647 | || ||||||||||| ||| ||||| | |||| ||||| || |||| ||||| Sbjct 1298 CAGGGACAGGATAAAAATTAACATCAATAACTTTGTTTAAATTTTGAGTTACAATCTTTG 1357 Query 118648 TGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAA 118707 ||||||| | | |||| ||| ||| ||| | | |||| ||| || | || Sbjct 1358 TGATTTCTTTTAATTTTTTAAAATTAAATCTG---TTATTTTCA---ACAAACATGTTAA 1411 Query 118708 GGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTT 118767 | || || || || || || ||||| | ||||| | |||||| | | || | Sbjct 1412 GTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCT 1471 Query 118768 CCGTGCACAAGTTTG-AACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 118826 | ||||| ||| ||| || ||||| ||||| | || |||||||| |||| ||||| Sbjct 1472 CAGTGCA-AAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTA 1530 Query 118827 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 118886 || |||||||| || | ||||||||| || || |||||| ||||| | | ||| | | Sbjct 1531 CAAGCATCCTTATACAACATGTATGGTGTACCAGTCTCCACTTGGGCTTCTATAATTGAC 1590 Query 118887 TTCCA 118891 ||||| Sbjct 1591 TTCCA 1595 >seq170880 Length=1133 Score = 89.7 bits (98), Expect = 6e-13 Identities = 246/368 (67%), Gaps = 8/368 (2%) Strand=Plus/Minus Query 119187 CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCA 119246 ||| |||||| ||||| | |||||| ||| || || || ||||| || | ||| || Sbjct 1031 CCACCCTGGTCGACATAGCGGGCAGTGTTGTTGAAGACGCGGAGCATGGGCACGATGCCG 972 Query 119247 TCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG--GCTCTGACATCGTGGATGT 119304 | || | || ||||| || | || || ||| | || | || | ||| |||| Sbjct 971 TTCGAGTATCCGTTTGTGCCACCGATGT-AG-CTTCCGGAGGCACGGATGTTGTGAATGT 914 Query 119305 GCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGA 119364 | | || ||||| || || ||| ||||| |||||| | | || || |||||| Sbjct 913 GGAGGCCGATACCGCCGGCGGTCTTGGAGATCATGGCGCACGTCTTCAGGGTGTCGTAGA 854 Query 119365 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGG 119424 | || ||||||||||| |||| | || | ||||||||| || | || || || Sbjct 853 TGCCCTCGATCGAGTCGTCCTTCATCGCCACGAGGAAGCAAGACGCAAGCTGGGGGTGGG 794 Query 119425 GTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTG 119483 | || ||||| |||||||| || || | || ||| |||| ||| || |||||| | | Sbjct 793 GCGTGCCAGCATTGAAGAGGGTGGGCGAGGCATGGGTGAA-GTACTTTTCGGACATGTAG 735 Query 119484 TCGTAGGTCTCCA-AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 119542 | ||| ||||| | | ||| | | || | ||||| || ||||| | ||| ||||| Sbjct 734 TTGTACGTCTCGATCGCACGCGTG-ACGTTGTTGCCGTGGATGCCGATAGCGACGCGCAT 676 Query 119543 AAACATGT 119550 | ||||| Sbjct 675 GAGCATGT 668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616293226493480