Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq170880 306 4e-78 seq275772 192 6e-44 seq167793 127 2e-24 seq2386 91.5 2e-13 seq266287 87.8 2e-12 >seq170880 Length=1133 Score = 306 bits (338), Expect = 4e-78 Identities = 360/482 (75%), Gaps = 4/482 (1%) Strand=Plus/Minus Query 79434 CTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGG 79493 ||| || | ||| || ||| || || ||||| || | | |||||||| ||||||||| Sbjct 1128 CTCTTCCTTGCCATGATTCTTGCGGAGATCGAGCCAGGCAAAGATGTCGGGGTGCCACGG 1069 Query 79494 CTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGC 79553 ||| || ||||||||||||| |||| ||||||| || ||||||| ||| || ||||| Sbjct 1068 CTCAAGGTAGATGGCGAACGCACCCGGGCGCTTGTTCCCACCCTGGTCGACATAGCGGGC 1009 Query 79554 CGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTT 79613 ||||||||||| || |||||||||||||||||||||| | | ||||| || || Sbjct 1008 AGTGTTGTTGAAGACGCGGAGCATGGGCACGATGCCGTTCGAGTATCCGTTTGTGCCACC 949 Query 79614 GATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACT 79672 ||| | ||| || || ||||| | | | ||||| ||||| || |||| || Sbjct 948 GATGTAGCTTCCGGAGGCACGGATGTT-GTGAATGTGGAGGCCGATACCGCCGGCGGTCT 890 Query 79673 TGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCA 79732 ||||||| |||||| ||| || || ||||||||||||||||||||||||||||||| Sbjct 889 TGGAGATCATGGCGCACGTCTTCAGGGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCA 830 Query 79733 TAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCG 79792 | || || |||||||| || | ||| |||| | ||| || || ||||||||||| | Sbjct 829 TCGCCACGAGGAAGCAAGACGCAAGCTGGGGGTGGGGCGTGCCAGCATTGAAGAGGGTGG 770 Query 79793 GCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGA 79852 ||| || || |||||| |||||| | ||| | ||||||||| | | |||| || Sbjct 769 GCGAGGCATGGGTGAAGTACTTTTCGGACATGTAGTTGTACGTCTCGATCGCACGCGTGA 710 Query 79853 GGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTG-GGGCGTCTCGCCG 79911 || || |||||||||||||| ||||||||||||| | || ||| ||||| |||| || Sbjct 709 CGTTGTTGCCGTGGATGCCGATAGCGACGCGCATGAGCATGTGCTGCGGGCG-CTCGGCG 651 Query 79912 AC 79913 || Sbjct 650 AC 649 Score = 230 bits (254), Expect = 3e-55 Identities = 330/460 (72%), Gaps = 4/460 (1%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||||| ||||| |||||||||| ||| || || || |||| | Sbjct 661 CCGCAGCACATGCTCATGCGCGTCGCTATCGGCATCCACGGCAACAACGTCACGCGTGCG 720 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||||| ||| || ||| | | |||| |||||| || || |||| ||||| ||| Sbjct 721 ATCGAGACGTACAACTACATGTCCGAAAAGTACTTCACCCATGCCTCGCCCACCCTCTTC 780 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 || || || ||| | |||| ||| | || || ||||| ||||| |||||||| ||| Sbjct 781 AATGCTGGCACGCCCCACCCCCAGCTTGCGTCTTGCTTCCTCGTGGCGATGAAGGACGAC 840 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 || |||||||||||||| || || ||| |||||| ||||||||| |||| Sbjct 841 TCGATCGAGGGCATCTACGACACCCTGAAGACGTGCGCCATGATCTCCAAGACCGCCGGC 900 Query 19343 GGTATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401 |||||||| ||||| | | | || ||||| | || | ||| ||| || || Sbjct 901 GGTATCGGCCTCCACATTCAC-AACATCCGTGCCTCCGGAAGCTACATCGGTGGCACAAA 959 Query 19402 CGGAGTAGCCG-ACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460 |||| || || |||| ||||| || ||||||||||||||||||||||| ||| | || | Sbjct 960 CGGA-TACTCGAACGGCATCGTGCCCATGCTCCGCGTCTTCAACAACACTGCCCGCTATG 1018 Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520 || ||||||| || ||| ||| ||| |||||||||||||||| ||||| |||||| Sbjct 1019 TCGACCAGGGTGGGAACAAGCGCCCGGGTGCGTTCGCCATCTACCTTGAGCCGTGGCACC 1078 Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGG 19560 | ||| || | | | ||||| || ||| ||| || || Sbjct 1079 CCGACATCTTTGCCTGGCTCGATCTCCGCAAGAATCATGG 1118 >seq275772 Length=427 Score = 192 bits (212), Expect = 6e-44 Identities = 293/416 (70%), Gaps = 6/416 (1%) Strand=Plus/Minus Query 19857 AGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGC 19916 ||||| |||||| ||||||||||||||| ||||| || || || | ||| || | Sbjct 427 AGAACCTCGGCGTGATCAAGTCGTCCAATCTGTGCACAGAGATTCTCGAGTACTCGGCCC 368 Query 19917 CGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCT 19976 | ||||| |||||| || || || ||||| | ||||| || || || ||| | Sbjct 367 CCGACGAAGTTGCCGTCTGCAACCTTGCGTCGATCGCGCTGCCTACCTTTATCCAGGACG 308 Query 19977 CCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATC 20036 | | | |||||| || || ||||||| || || ||||| ||||| |||| Sbjct 307 GCAAGTACAACTTTGAGAAGCTGCACGAGGTCGCCAAAGTTGTCACCTACAATCTTAATC 248 Query 20037 GCGTCATCGATCGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCC 20093 || ||||||| || | |||||| | |||||||| ||||||||||| ||||| | Sbjct 247 GCATCATCGACGTTAATTATTACCCTGTGCCCGAGGCG---CGCAAGTCGAACATGCGTC 191 Query 20094 ACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCT 20153 |||| ||||||| ||||| |||||||| || ||||| | |||| ||| ||| | ||| Sbjct 190 ACCGCCCGATCGGCATCGGTGTCCAGGGTCTTGCCGATGCTTTCCAGATCCTCCGGCTCC 131 Query 20154 CATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACG 20213 | || ||| || |||||||| |||||||| ||||| ||| || | ||||||| Sbjct 130 CCTTTGACTCGCCGGAGGCGCGCAAGCTCAACCTCCAGATCTTTGAGACCCTCTACCACG 71 Query 20214 CGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTC 20269 || ||| || ||||| |||||||| | || || ||||||||||||||| Sbjct 70 GCGCACTCGAGGCATCGTCTGAACTCGCGGAGCGTGATGGTCCGTACGAGACGTTC 15 Score = 127 bits (140), Expect = 2e-24 Identities = 286/424 (67%), Gaps = 22/424 (5%) Strand=Plus/Plus Query 78735 GAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTC---GCATGACTCGAGCAGGGCCGC 78791 |||||||||||| | || || || |||||||| ||| |||| || || | Sbjct 15 GAACGTCTCGTACGGACCATCACGCTCCGCGAGTTCAGACGATGCCTCG---AGTGCGCC 71 Query 78792 GTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGA 78851 |||||| | | ||| ||||| |||||||| |||||||| | | ||| || | Sbjct 72 GTGGTAGAGGGTCTCAAAGATCTGGAGGTTGAGCTTGCGCGCCTCCGGCGAGTCAAAGGG 131 Query 78852 AAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTG 78911 || | ||| ||| ||| ||||||| || |||||||| ||||| ||||||| ||||| Sbjct 132 GAGCCGGAGGATCTGGAAAGCATCGGCAAGACCCTGGACACCGATGCCGATCGGGCGGTG 191 Query 78912 GCGCATGTTGCTCTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCG 78968 |||||||| ||| || |||||||| | |||||| | || ||||||| ||| Sbjct 192 ACGCATGTTCGACTTGCG---CGCCTCGGGCACAGGGTAATAATTAACGTCGATGATGCG 248 Query 78969 GTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAA-ATCAAAATGAT 79027 || || || ||||| || | ||||||| || || | || | | || Sbjct 249 ATTAAGATTGTAGGTGACAACTTTGGCGACCTCGTGCAGCTTCTCAAAGTTGTACTTGCC 308 Query 79028 TTCCTTTGATGAAAGTCGGTAGGCACAGCGAT----GCCAGGTTGCACACGGCCGTCTCG 79083 ||| | ||| || |||||||| ||||| || |||||||| ||||| ||| Sbjct 309 GTCC-TGGATAAA----GGTAGGCAGCGCGATCGACGCAAGGTTGCAGACGGCAACTTCG 363 Query 79084 TCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATG 79143 || ||| || ||||| || |||||||||| ||| ||||||||||| ||||| | Sbjct 364 TCGGGGGCCGAGTACTCGAGAATCTCTGTGCACAGATTGGACGACTTGATCACGCCGAGG 423 Query 79144 TTCT 79147 |||| Sbjct 424 TTCT 427 >seq167793 Length=454 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 53843 ACGATGCGGCGATCGTCCAGGCCGCCCGCGTTTCTTACGGGGCCGGAACCAAGTCGGTCA 53902 |||| || |||||||||||||| || || || || |||||| ||||||| ||||| Sbjct 454 ACGACGCCGCGATCGTCCAGGCGGCGCGGGTGTCGTACGGGCGCGGAACCCGCAAGGTCA 395 Query 53903 GCGACGATCGGGCTCTGATCCGCTATCTCATGCGCCACAAGCACACGACGCCGTTTGAGA 53962 |||| ||| || ||||||||||| || |||||||| ||| |||||||||| |||| Sbjct 394 GCGAGGATACGGGGCTGATCCGCTACCTGATGCGCCATCGGCATTCGACGCCGTTCGAGA 335 Query 53963 TGGTCGAATTCAAGTTTCACGTGCGCGC-GCCCATCTACGTGGCGCGTCAGTGGCTCCGT 54021 || |||| |||| | ||| | | || ||| || | || || || || ||| ||||| Sbjct 334 TGTGCGAAATCAAATACCACAT-CAAGCTGCCGATTTTTGTCGCACGACAATGGATCCGT 276 Query 54022 CACCGGACTGCGTCCGTCAACGAG 54045 ||||| || ||| ||| |||||| Sbjct 275 CACCGTACGGCGAACGTGAACGAG 252 >seq2386 Length=6545 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 166343 GTCATCGAGATCTGTCCTCTGGCGTACATGCGCGGTCGGACGTTCGACAACGCCTGGATT 166402 ||||||||| || || ||||| |||||||| || ||||| || || |||| | || Sbjct 5351 GTCATCGAGGTCGCGCCGCTGGCCTACATGCGTGGCCGGACCCTCAACGACGCGTTCATC 5292 Query 166403 ATCGGGGATGAGATGCAGAACTCGACGCCGGGTCAGATGAAGATGCTTCTGACCCGGATC 166462 ||| || ||| ||||||| | ||||| | |||||||||||| | ||||||||| || Sbjct 5291 ATCCTCGACGAGGCGCAGAACACCACGCCCGAGCAGATGAAGATGTTCCTGACCCGGCTC 5232 Query 166463 GGGGAAGGTTCGAAGATGATCGTCGCGGGTGAC 166495 || ||||| ||| | ||||| | || ||| Sbjct 5231 GGCTTCGGTTCCAAGGTCGTCGTCACCGGCGAC 5199 >seq266287 Length=596 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGC-CT 78565 |||||||||||||| | |||||| ||||||||||| |||||||||||| ||||| || Sbjct 377 GAACTCGCCGGCCAAGACGCGGCGCGTGTAGATGTTGGACGTGTACGGCTC-AAAGCACT 435 Query 78566 CGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAAT 78625 ||||| || | |||||| ||| || ||||||||||| || | || || |||| Sbjct 436 CGTTGAATCCAAGAATCTGGCTGGTGCTCGCTGTCGGCATGGGCGCCAGAAGGAGCGAAT 495 Query 78626 TCCGAAGACC 78635 | || | ||| Sbjct 496 TGCGGATACC 505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546624963785520