Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq170880 293 3e-74
seq28641 152 6e-32
seq435 131 2e-25
seq236515 111 2e-19
seq244739 109 6e-19
seq101198 109 6e-19
seq68010 98.7 1e-15
seq275772 82.4 8e-11
>seq170880
Length=1133
Score = 293 bits (324), Expect = 3e-74
Identities = 340/456 (75%), Gaps = 2/456 (0%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||||||||| | || |||||||| || || |||||||| |||||||||
Sbjct 674 TCATGCGCGTCGCTATCGGCATCCACGGCAACAACGTCACGCGTGCGATCGAGACGTACA 733
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
||| ||| | |||||||||| || || ||| |||| ||||| ||||| ||||| |||
Sbjct 734 ACTACATGTCCGAAAAGTACTTCACCCATGCCTCGCCCACCCTCTTCAATGCTGGCACGC 793
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
||||| ||| | || |||||||| |||||||||||||| ||||||||||| ||||
Sbjct 794 CCCACCCCCAGCTTGCGTCTTGCTTCCTCGTGGCGATGAAGGACGACTCGATCGAGGGCA 853
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
||||||| || || ||| ||| ||| ||||||||| | || |||||||| |||
Sbjct 854 TCTACGACACCCTGAAGACGTGCGCCATGATCTCCAAGACCGCCGGCGGTATCGGCCTCC 913
Query 53433 AC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491
|| | | | ||| ||||||| ||| | ||| || || ||||| | | |
Sbjct 914 ACATTCAC-AACATCCGTGCCTCCGGAAGCTACATCGGTGGCACAAACGGATACTCGAAC 972
Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551
|| |||||||| ||||||||||||||||||||||| ||||| || ||| ||||||||||
Sbjct 973 GGCATCGTGCCCATGCTCCGCGTCTTCAACAACACTGCCCGCTATGTCGACCAGGGTGGG 1032
Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611
|||||| ||| |||||||||||||||| |||||||||||| ||||||| | |
Sbjct 1033 AACAAGCGCCCGGGTGCGTTCGCCATCTACCTTGAGCCGTGGCACCCCGACATCTTTGCC 1092
Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAG 53647
| ||||| || || |||||| || | ||||||
Sbjct 1093 TGGCTCGATCTCCGCAAGAATCATGGCAAGGAAGAG 1128
>seq28641
Length=3111
Score = 152 bits (168), Expect = 6e-32
Identities = 205/283 (72%), Gaps = 13/283 (5%)
Strand=Plus/Minus
Query 124494 AACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGC 124553
||||| || | |||||||| ||| |||||| | | |||||| || || || ||||
Sbjct 2501 AACTCGCGCACGCTGTGCGCCTCGCCCGTGGCTACCACGAAGTCCTCTGGTGCGTCCTGC 2442
Query 124554 TGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCA 124613
|||| ||| ||||||||||| | |||||||| ||||| |||||||||||||||
Sbjct 2441 TGCAGCATGAGCCACATGGCCTCCACGTAGTCGCGCGCGTGGCCCCAGTCGCGCTTGCTG 2382
Query 124614 TCCAGGTTTCCGAGCTCGATTGGC-----TTGGCCGTCTTGTTCCACTCCGCCAAACCCA 124668
|||||||| |||||||||| || ||||| ||| || || | |||
Sbjct 2381 TCCAGGTTGCCGAGCTCGAGGTGCGACATGAGGCCGAGGTGT--ATCTTGGCGACGCCCC 2324
Query 124669 GTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACA 124725
| || || ||||||||||| || |||| ||||| ||| | ||||||||||||||
Sbjct 2323 GCGTGATTTTGCGCGTCACGAAGTTCTCG---CCGCGGCGCGGACTCTCGTGGTTGAACA 2267
Query 124726 GAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTT 124768
| | || | ||||| ||||| ||||||| ||||||||||||
Sbjct 2266 GCACTCCGTTGCACGCGAACATGCCGTACGCCTCGCGGTAGTT 2224
Score = 145 bits (160), Expect = 8e-30
Identities = 204/282 (72%), Gaps = 11/282 (4%)
Strand=Plus/Minus
Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003
|||||||| | |||||||| ||| || || || | ||| ||||||||||| || |||
Sbjct 2501 AACTCGCGCACGCTGTGCGCCTCGCCCGTGGCTACCACGAAGTCCTCTGGTGCGTCCTGC 2442
Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063
|| |||||||||||||||||||| ||||| || ||||||| |||||||||||||||
Sbjct 2441 TGCAGCATGAGCCACATGGCCTCCACGTAGTCGCGCGCGTGGCCCCAGTCGCGCTTGCTG 2382
Query 159064 TCCATGTTCCCGAGCTCGA----TGAC-TTTTCCAGACTTTTTCCACTCAGCCAGACCGA 159118
|||| ||| |||||||||| ||| | | || | | || || | ||
Sbjct 2381 TCCAGGTTGCCGAGCTCGAGGTGCGACATGAGGCCGAGGTGT--ATCTTGGCGACGCCCC 2324
Query 159119 GCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGA--CTCATGGTTAAACAG 159176
||||||| ||||||||||| || | | ||||| || | || ||| ||||| |||||
Sbjct 2323 GCGTGATTTTGCGCGTCACGAAGTTCTCGCCGCGGCG--CGGACTCTCGTGGTTGAACAG 2266
Query 159177 AATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATT 159218
| ||| | || ||||||| | || | ||||||||| ||
Sbjct 2265 CACTCCGTTGCACGCGAACATGCCGTACGCCTCGCGGTAGTT 2224
>seq435
Length=5833
Score = 131 bits (144), Expect = 2e-25
Identities = 279/413 (68%), Gaps = 9/413 (2%)
Strand=Plus/Plus
Query 124488 TCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATC 124547
|||| ||||| |||||| ||| ||||| || || || ||| | || |||| |
Sbjct 2216 TCGAGGAACTCCCGGATGGAGTGGGTCTCGCCGGTCGAGATGACGTAGTCGTCGGCGACG 2275
Query 124548 GACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGC 124607
|||||| | ||| || |||| || | ||||||||| | ||| ||||||||||||
Sbjct 2276 TCCTGCTGGAGCATCAGGTACATCGCCTCGACGTAGTCGCCCGCGAATCCCCAGTCGCGC 2335
Query 124608 TTGGCATCCAGGTTTCCGAGCT----CGATTG--GCTTGGCCGTCTTGTTCCACTCCGCC 124661
|| || || ||||| || ||| ||| | ||||| || | | ||| | || ||
Sbjct 2336 TTCGCGTCGAGGTTGCCCAGCGACACCGAGTCCTGCTTGCCCAACGCGATCCGCGCCACC 2395
Query 124662 AAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTG 124721
| | | | |||||||||||||| |||||| ||| || || || ||||| |||
Sbjct 2396 G--CGCTGC-TGATCTTGCGCGTCACGAACTCGACACCACGACGGGGTGATTCGTGATTG 2452
Query 124722 AACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAA 124781
|| |||||||| | | || ||| |||||||||||||||||||| | ||||| |
Sbjct 2453 AAGAGAATGCCGGAGCTGGCGTGCATGCCGTACGACTCGCGGTAGTTGATGGTCATGTAG 2512
Query 124782 TACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTT 124841
| || ||| ||||| |||||| ||||| || || ||| ||||| | || ||
Sbjct 2513 TGGCCGTAGACCTTGGCCACGCCGTAGGGCGACCGCGGCCAGAGCAGGGTGGTCTCCTTC 2572
Query 124842 TGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAA 124894
|| | | ||| | | || |||||||||||| | ||||| |||||
Sbjct 2573 TGCGGGACCTCCTGGACCCGACCGAACATCTCCGAACTCGATGCCTGGTAGAA 2625
Score = 109 bits (120), Expect = 6e-19
Identities = 220/323 (68%), Gaps = 9/323 (3%)
Strand=Plus/Plus
Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003
||||| |||||| ||| ||||| || |||| || || |||| || | || |||
Sbjct 2222 AACTCCCGGATGGAGTGGGTCTCGCCGGTCGAGATGACGTAGTCGTCGGCGACGTCCTGC 2281
Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063
|||||||| || |||| ||||||||||| || |||| |||||||||||||| ||
Sbjct 2282 TGGAGCATCAGGTACATCGCCTCGACGTAGTCGCCCGCGAATCCCCAGTCGCGCTTCGCG 2341
Query 159064 TCCATGTTCCCGAGCTCGATGACTTTTCCAGACTTTTTCCAC----TCAGCCAGACCGAG 159119
|| | ||| || || ||| | ||| | ||| | || || || |||| |
Sbjct 2342 TCGAGGTTGCCCAG--CGACACCGAGTCCTG-CTTGCCCAACGCGATCCGCGCCACCGCG 2398
Query 159120 C--GTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGA 159177
| |||||||||||||||| ||||| | || || || || || || || || |||
Sbjct 2399 CTGCTGATCTTGCGCGTCACGAACTCGACACCACGACGGGGTGATTCGTGATTGAAGAGA 2458
Query 159178 ATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCA 159237
||||||| | ||| || | || ||||||||||| || | || || ||| ||
Sbjct 2459 ATGCCGGAGCTGGCGTGCATGCCGTACGACTCGCGGTAGTTGATGGTCATGTAGTGGCCG 2518
Query 159238 AAGAGCTTGGAGACGCCGTATGG 159260
||| ||||| |||||||| ||
Sbjct 2519 TAGACCTTGGCCACGCCGTAGGG 2541
>seq236515
Length=306
Score = 111 bits (122), Expect = 2e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 124658 CGCCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTG 124717
||||| ||| || | |||||| || || |||||| ||||| | ||||||
Sbjct 62 CGCCACACCGTCGGTGACCTTGCGGGTGACGAACTCGATGCCGCGCAACGGGCTCTCGTG 121
Query 124718 GTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCAT 124777
|||||||| || || | | ||| ||| ||| | |||||||||||| ||||||
Sbjct 122 ATTGAACAGGATACCCGACGAGGCATGCATGCCGAAGCTCTCGCGGTAGTTCACCGTCAT 181
Query 124778 CCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837
||| | | || | ||||| | ||| |||||||||| || || ||||| || || |||||
Sbjct 182 CCAGTGCGCATACAGCTTCGCCACCGCATAGGGGCTGCGCGGATAGAACGGCGTCTTTTC 241
Query 124838 ATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGA 124876
|| || | |||||||| ||| |||| ||||||||||
Sbjct 242 GTTCTGCTTCGGTTGCTGGATCAGCCCATACATCTCCGA 280
>seq244739
Length=1400
Score = 109 bits (120), Expect = 6e-19
Identities = 199/288 (69%), Gaps = 9/288 (3%)
Strand=Plus/Minus
Query 124550 CTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTT 124609
|||||| | ||| ||||||| | | ||||||||| || || |||||||| |||||
Sbjct 638 CTGCTGAAGCATCTGCCACATACCCTCGACGTAGTCACGCGCATGTCCCCAGTCACGCTT 579
Query 124610 GGCATCCAGGTTTCCGAGCTCGATT---GGCT--TGGCCGT-CTTGTTCCACTCCGCCAA 124663
||| ||| || ||||| | || |||| |||||| |||| || || ||||
Sbjct 578 GGCCGACAGATTGCCGAGGTAGAGGCACGGCTGCTGGCCGAGCTTGATC---TCAGCCAC 522
Query 124664 ACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAA 124723
| | | ||||| || || || ||| | ||| || ||| | |||||| |||||
Sbjct 521 CGCGCGAGAGATCTTCCGAGTGACGAACGTGCGACCACGGCGCGGACTCTCGTGATTGAA 462
Query 124724 CAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATA 124783
|||||||| |||| || |||| ||||||||||| ||||||||||| ||||| |
Sbjct 461 GAGAATGCCGTTACAAGCGTACATACCGTACGACTCACGGTAGTTTTTGACGATCCAGAA 402
Query 124784 CCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831
||| | ||||| | || || || || || |||||||| || ||
Sbjct 401 CCCGTACAGCTTCGCGACACCGTACGGCGACCGCGGGTAGAACGGCGT 354
>seq101198
Length=583
Score = 109 bits (120), Expect = 6e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 117287 GTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCA 117346
||| |||| | | | | |||||||||||||| | ||| |||||||| ||||| ||||
Sbjct 214 GTCAACGGGGACATGAGTGTGAAAATGTAACGGGGGCTCGCAGCATCTTTGCCCCCAGAC 155
Query 117347 AGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAG 117406
||||| ||||| || || |||| || ||||| ||||| | |||||| | |||||| ||
Sbjct 154 AGACGGGTACCAAACTGACCACGGGGTTCCAATAGGTTAATGTTGTTCGACCCCACATAG 95
Query 117407 TTTTGAGCCAAGTTGACAATCGT 117429
|||||||||| || || || ||
Sbjct 94 TTTTGAGCCAGATTCACTATTGT 72
>seq68010
Length=13939
Score = 98.7 bits (108), Expect = 1e-15
Identities = 201/294 (68%), Gaps = 5/294 (2%)
Strand=Plus/Plus
Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063
|| ||||| |||||||| |||| ||||| || | || | ||||||||||| | |||
Sbjct 3417 TGCAGCATCCGCCACATGCCCTCTACGTACTCAGGGGCATACCCCCAGTCGCGAATCGCA 3476
Query 159064 TCCATGTTCCCGAGCTCGATGAC-TTTTCCAGACTTTTTCCACTCAGCCAGACCGA--GC 159120
|| | || ||||| | | || ||||| || | | || | ||| || ||
Sbjct 3477 TCGAGATTACCGAGGTACAGCACGTTTTCGAGGCCCGCTTTGATCCGTGCGACGGAGCGC 3536
Query 159121 GTGATCTTGCGCGTCACAAAC-TCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAAT 159179
|||||||| || ||||| ||| ||| | ||||| || |||||||||||| || |||||
Sbjct 3537 GTGATCTTCCGTGTCACGAACGTCT-CGCCGCGTCGGGGCGACTCATGGTTGAAAAGAAT 3595
Query 159180 GCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAA 159239
||| | ||||||||| || | |||||||||||| || |||||| || |
Sbjct 3596 TCCGTTCACCGCGAACAGGCCGTACGCCTCGCGGTAATTCCGGGTCGCCCAGTACGCATA 3655
Query 159240 GAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTG 159293
|| || | | ||||||| || || ||||| || ||| |||||||||
Sbjct 3656 GACTTTTGCGGCGCCGTACGGCGATCGCGGATACAACACCGTCGACTCATTTTG 3709
Score = 93.3 bits (102), Expect = 5e-14
Identities = 265/397 (67%), Gaps = 24/397 (6%)
Strand=Plus/Plus
Query 124514 CTCACCCGTGCCAATCACGAAATCTTCGGGA--ATCGACTGCTGCAACATAAGCCACATG 124571
||| || ||| | | |||| | || ||||| |||| | ||||| ||| ||||||||
Sbjct 3377 CTCGCCGGTGGCGAGCACGTAGTCGTCGGGTTCATCGGC--CTGCAGCATCCGCCACATG 3434
Query 124572 GCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGCTCG 124631
| | ||||| || || | |||||||||||| | ||||| || || ||||| |
Sbjct 3435 CCCTCTACGTACTCAGGGGCATACCCCCAGTCGCGAATCGCATCGAGATTACCGAGGTAC 3494
Query 124632 A-----TTGGCTTGGCCGTCTT-GTTCCACTCCGCCAAACCCAGTGTAATCTTGCGCGTC 124685
| || | |||| ||| | ||| | || | | | ||| ||||| || |||
Sbjct 3495 AGCACGTTTTCGAGGCCCGCTTTGATCCG-TGCGACGGAGCGCGTG--ATCTTCCGTGTC 3551
Query 124686 ACAAAC---TCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACAC-GC 124741
|| ||| ||| |||||||| ||||| |||||||| ||||| || || ||| ||
Sbjct 3552 ACGAACGTCTCG---CCGCGTCGGGGCGACTCATGGTTGAAAAGAATTCC-GTTCACCGC 3607
Query 124742 AAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGACAC 124801
|||| ||||||| ||||||||| || ||| ||| ||| || ||| || | |
Sbjct 3608 GAACAGGCCGTACGCCTCGCGGTAATTCCGGGTCGCCCAGTACGCATAGACTTTTGCGGC 3667
Query 124802 GCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAGGTTGCTGAATCTT 124861
||| || || ||| || || || || |||||||| | || || || |
Sbjct 3668 GCCGTACGGCGATCGCGGATACAACACCGTCGACTCATTTTGTG---GTGGCGGAGTGGC 3724
Query 124862 CCCAAACATCTCCGAAGTACCCGCCTGATAGAATTTG 124898
||||||||||||||| | |||||||||||| |||
Sbjct 3725 GCCAAACATCTCCGAACTCGACGCCTGATAGAACTTG 3761
>seq275772
Length=427
Score = 82.4 bits (90), Expect = 8e-11
Identities = 128/182 (70%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 55098 ACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATCG 55157
||||||| ||||| ||||| || | ||||| || || || || || ||||||
Sbjct 298 ACTTTGAGAAGCTGCACGAGGTCGCCAAAGTTGTCACCTACAATCTTAATCGCATCATCG 239
Query 55158 ACAAGAATTACTACCC---GACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCA 55214
|| ||||| ||||| | | || |||||||||||| ||| | || ||||| || |
Sbjct 238 ACGTTAATTATTACCCTGTGCCCGA---GGCGCGCAAGTCGAACATGCGTCACCGCCCGA 182
Query 55215 TCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACT 55274
||| ||||||||| ||||| | ||||| ||| ||| ||| | | ||||| ||||
Sbjct 181 TCGGCATCGGTGTCCAGGGTCTTGCCGATGCTTTCCAGATCCTCCGGCTCCCCTTTGACT 122
Query 55275 CG 55276
||
Sbjct 121 CG 120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545320696863400
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