Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq170880 293 3e-74 seq28641 152 6e-32 seq435 131 2e-25 seq236515 111 2e-19 seq244739 109 6e-19 seq101198 109 6e-19 seq68010 98.7 1e-15 seq275772 82.4 8e-11 >seq170880 Length=1133 Score = 293 bits (324), Expect = 3e-74 Identities = 340/456 (75%), Gaps = 2/456 (0%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||||||||| | || |||||||| || || |||||||| ||||||||| Sbjct 674 TCATGCGCGTCGCTATCGGCATCCACGGCAACAACGTCACGCGTGCGATCGAGACGTACA 733 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 ||| ||| | |||||||||| || || ||| |||| ||||| ||||| ||||| ||| Sbjct 734 ACTACATGTCCGAAAAGTACTTCACCCATGCCTCGCCCACCCTCTTCAATGCTGGCACGC 793 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 ||||| ||| | || |||||||| |||||||||||||| ||||||||||| |||| Sbjct 794 CCCACCCCCAGCTTGCGTCTTGCTTCCTCGTGGCGATGAAGGACGACTCGATCGAGGGCA 853 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || || ||| ||| ||| ||||||||| | || |||||||| ||| Sbjct 854 TCTACGACACCCTGAAGACGTGCGCCATGATCTCCAAGACCGCCGGCGGTATCGGCCTCC 913 Query 53433 AC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 || | | | ||| ||||||| ||| | ||| || || ||||| | | | Sbjct 914 ACATTCAC-AACATCCGTGCCTCCGGAAGCTACATCGGTGGCACAAACGGATACTCGAAC 972 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || |||||||| ||||||||||||||||||||||| ||||| || ||| |||||||||| Sbjct 973 GGCATCGTGCCCATGCTCCGCGTCTTCAACAACACTGCCCGCTATGTCGACCAGGGTGGG 1032 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 |||||| ||| |||||||||||||||| |||||||||||| ||||||| | | Sbjct 1033 AACAAGCGCCCGGGTGCGTTCGCCATCTACCTTGAGCCGTGGCACCCCGACATCTTTGCC 1092 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAG 53647 | ||||| || || |||||| || | |||||| Sbjct 1093 TGGCTCGATCTCCGCAAGAATCATGGCAAGGAAGAG 1128 >seq28641 Length=3111 Score = 152 bits (168), Expect = 6e-32 Identities = 205/283 (72%), Gaps = 13/283 (5%) Strand=Plus/Minus Query 124494 AACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGC 124553 ||||| || | |||||||| ||| |||||| | | |||||| || || || |||| Sbjct 2501 AACTCGCGCACGCTGTGCGCCTCGCCCGTGGCTACCACGAAGTCCTCTGGTGCGTCCTGC 2442 Query 124554 TGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCA 124613 |||| ||| ||||||||||| | |||||||| ||||| ||||||||||||||| Sbjct 2441 TGCAGCATGAGCCACATGGCCTCCACGTAGTCGCGCGCGTGGCCCCAGTCGCGCTTGCTG 2382 Query 124614 TCCAGGTTTCCGAGCTCGATTGGC-----TTGGCCGTCTTGTTCCACTCCGCCAAACCCA 124668 |||||||| |||||||||| || ||||| ||| || || | ||| Sbjct 2381 TCCAGGTTGCCGAGCTCGAGGTGCGACATGAGGCCGAGGTGT--ATCTTGGCGACGCCCC 2324 Query 124669 GTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACA 124725 | || || ||||||||||| || |||| ||||| ||| | |||||||||||||| Sbjct 2323 GCGTGATTTTGCGCGTCACGAAGTTCTCG---CCGCGGCGCGGACTCTCGTGGTTGAACA 2267 Query 124726 GAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTT 124768 | | || | ||||| ||||| ||||||| |||||||||||| Sbjct 2266 GCACTCCGTTGCACGCGAACATGCCGTACGCCTCGCGGTAGTT 2224 Score = 145 bits (160), Expect = 8e-30 Identities = 204/282 (72%), Gaps = 11/282 (4%) Strand=Plus/Minus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 |||||||| | |||||||| ||| || || || | ||| ||||||||||| || ||| Sbjct 2501 AACTCGCGCACGCTGTGCGCCTCGCCCGTGGCTACCACGAAGTCCTCTGGTGCGTCCTGC 2442 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 || |||||||||||||||||||| ||||| || ||||||| ||||||||||||||| Sbjct 2441 TGCAGCATGAGCCACATGGCCTCCACGTAGTCGCGCGCGTGGCCCCAGTCGCGCTTGCTG 2382 Query 159064 TCCATGTTCCCGAGCTCGA----TGAC-TTTTCCAGACTTTTTCCACTCAGCCAGACCGA 159118 |||| ||| |||||||||| ||| | | || | | || || | || Sbjct 2381 TCCAGGTTGCCGAGCTCGAGGTGCGACATGAGGCCGAGGTGT--ATCTTGGCGACGCCCC 2324 Query 159119 GCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGA--CTCATGGTTAAACAG 159176 ||||||| ||||||||||| || | | ||||| || | || ||| ||||| ||||| Sbjct 2323 GCGTGATTTTGCGCGTCACGAAGTTCTCGCCGCGGCG--CGGACTCTCGTGGTTGAACAG 2266 Query 159177 AATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATT 159218 | ||| | || ||||||| | || | ||||||||| || Sbjct 2265 CACTCCGTTGCACGCGAACATGCCGTACGCCTCGCGGTAGTT 2224 >seq435 Length=5833 Score = 131 bits (144), Expect = 2e-25 Identities = 279/413 (68%), Gaps = 9/413 (2%) Strand=Plus/Plus Query 124488 TCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATC 124547 |||| ||||| |||||| ||| ||||| || || || ||| | || |||| | Sbjct 2216 TCGAGGAACTCCCGGATGGAGTGGGTCTCGCCGGTCGAGATGACGTAGTCGTCGGCGACG 2275 Query 124548 GACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGC 124607 |||||| | ||| || |||| || | ||||||||| | ||| |||||||||||| Sbjct 2276 TCCTGCTGGAGCATCAGGTACATCGCCTCGACGTAGTCGCCCGCGAATCCCCAGTCGCGC 2335 Query 124608 TTGGCATCCAGGTTTCCGAGCT----CGATTG--GCTTGGCCGTCTTGTTCCACTCCGCC 124661 || || || ||||| || ||| ||| | ||||| || | | ||| | || || Sbjct 2336 TTCGCGTCGAGGTTGCCCAGCGACACCGAGTCCTGCTTGCCCAACGCGATCCGCGCCACC 2395 Query 124662 AAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTG 124721 | | | | |||||||||||||| |||||| ||| || || || ||||| ||| Sbjct 2396 G--CGCTGC-TGATCTTGCGCGTCACGAACTCGACACCACGACGGGGTGATTCGTGATTG 2452 Query 124722 AACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAA 124781 || |||||||| | | || ||| |||||||||||||||||||| | ||||| | Sbjct 2453 AAGAGAATGCCGGAGCTGGCGTGCATGCCGTACGACTCGCGGTAGTTGATGGTCATGTAG 2512 Query 124782 TACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTT 124841 | || ||| ||||| |||||| ||||| || || ||| ||||| | || || Sbjct 2513 TGGCCGTAGACCTTGGCCACGCCGTAGGGCGACCGCGGCCAGAGCAGGGTGGTCTCCTTC 2572 Query 124842 TGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAA 124894 || | | ||| | | || |||||||||||| | ||||| ||||| Sbjct 2573 TGCGGGACCTCCTGGACCCGACCGAACATCTCCGAACTCGATGCCTGGTAGAA 2625 Score = 109 bits (120), Expect = 6e-19 Identities = 220/323 (68%), Gaps = 9/323 (3%) Strand=Plus/Plus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 ||||| |||||| ||| ||||| || |||| || || |||| || | || ||| Sbjct 2222 AACTCCCGGATGGAGTGGGTCTCGCCGGTCGAGATGACGTAGTCGTCGGCGACGTCCTGC 2281 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 |||||||| || |||| ||||||||||| || |||| |||||||||||||| || Sbjct 2282 TGGAGCATCAGGTACATCGCCTCGACGTAGTCGCCCGCGAATCCCCAGTCGCGCTTCGCG 2341 Query 159064 TCCATGTTCCCGAGCTCGATGACTTTTCCAGACTTTTTCCAC----TCAGCCAGACCGAG 159119 || | ||| || || ||| | ||| | ||| | || || || |||| | Sbjct 2342 TCGAGGTTGCCCAG--CGACACCGAGTCCTG-CTTGCCCAACGCGATCCGCGCCACCGCG 2398 Query 159120 C--GTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGA 159177 | |||||||||||||||| ||||| | || || || || || || || || ||| Sbjct 2399 CTGCTGATCTTGCGCGTCACGAACTCGACACCACGACGGGGTGATTCGTGATTGAAGAGA 2458 Query 159178 ATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCA 159237 ||||||| | ||| || | || ||||||||||| || | || || ||| || Sbjct 2459 ATGCCGGAGCTGGCGTGCATGCCGTACGACTCGCGGTAGTTGATGGTCATGTAGTGGCCG 2518 Query 159238 AAGAGCTTGGAGACGCCGTATGG 159260 ||| ||||| |||||||| || Sbjct 2519 TAGACCTTGGCCACGCCGTAGGG 2541 >seq236515 Length=306 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 124658 CGCCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTG 124717 ||||| ||| || | |||||| || || |||||| ||||| | |||||| Sbjct 62 CGCCACACCGTCGGTGACCTTGCGGGTGACGAACTCGATGCCGCGCAACGGGCTCTCGTG 121 Query 124718 GTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCAT 124777 |||||||| || || | | ||| ||| ||| | |||||||||||| |||||| Sbjct 122 ATTGAACAGGATACCCGACGAGGCATGCATGCCGAAGCTCTCGCGGTAGTTCACCGTCAT 181 Query 124778 CCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTC 124837 ||| | | || | ||||| | ||| |||||||||| || || ||||| || || ||||| Sbjct 182 CCAGTGCGCATACAGCTTCGCCACCGCATAGGGGCTGCGCGGATAGAACGGCGTCTTTTC 241 Query 124838 ATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGA 124876 || || | |||||||| ||| |||| |||||||||| Sbjct 242 GTTCTGCTTCGGTTGCTGGATCAGCCCATACATCTCCGA 280 >seq244739 Length=1400 Score = 109 bits (120), Expect = 6e-19 Identities = 199/288 (69%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 124550 CTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTT 124609 |||||| | ||| ||||||| | | ||||||||| || || |||||||| ||||| Sbjct 638 CTGCTGAAGCATCTGCCACATACCCTCGACGTAGTCACGCGCATGTCCCCAGTCACGCTT 579 Query 124610 GGCATCCAGGTTTCCGAGCTCGATT---GGCT--TGGCCGT-CTTGTTCCACTCCGCCAA 124663 ||| ||| || ||||| | || |||| |||||| |||| || || |||| Sbjct 578 GGCCGACAGATTGCCGAGGTAGAGGCACGGCTGCTGGCCGAGCTTGATC---TCAGCCAC 522 Query 124664 ACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAA 124723 | | | ||||| || || || ||| | ||| || ||| | |||||| ||||| Sbjct 521 CGCGCGAGAGATCTTCCGAGTGACGAACGTGCGACCACGGCGCGGACTCTCGTGATTGAA 462 Query 124724 CAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATA 124783 |||||||| |||| || |||| ||||||||||| ||||||||||| ||||| | Sbjct 461 GAGAATGCCGTTACAAGCGTACATACCGTACGACTCACGGTAGTTTTTGACGATCCAGAA 402 Query 124784 CCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 ||| | ||||| | || || || || || |||||||| || || Sbjct 401 CCCGTACAGCTTCGCGACACCGTACGGCGACCGCGGGTAGAACGGCGT 354 >seq101198 Length=583 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 117287 GTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCA 117346 ||| |||| | | | | |||||||||||||| | ||| |||||||| ||||| |||| Sbjct 214 GTCAACGGGGACATGAGTGTGAAAATGTAACGGGGGCTCGCAGCATCTTTGCCCCCAGAC 155 Query 117347 AGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAG 117406 ||||| ||||| || || |||| || ||||| ||||| | |||||| | |||||| || Sbjct 154 AGACGGGTACCAAACTGACCACGGGGTTCCAATAGGTTAATGTTGTTCGACCCCACATAG 95 Query 117407 TTTTGAGCCAAGTTGACAATCGT 117429 |||||||||| || || || || Sbjct 94 TTTTGAGCCAGATTCACTATTGT 72 >seq68010 Length=13939 Score = 98.7 bits (108), Expect = 1e-15 Identities = 201/294 (68%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 || ||||| |||||||| |||| ||||| || | || | ||||||||||| | ||| Sbjct 3417 TGCAGCATCCGCCACATGCCCTCTACGTACTCAGGGGCATACCCCCAGTCGCGAATCGCA 3476 Query 159064 TCCATGTTCCCGAGCTCGATGAC-TTTTCCAGACTTTTTCCACTCAGCCAGACCGA--GC 159120 || | || ||||| | | || ||||| || | | || | ||| || || Sbjct 3477 TCGAGATTACCGAGGTACAGCACGTTTTCGAGGCCCGCTTTGATCCGTGCGACGGAGCGC 3536 Query 159121 GTGATCTTGCGCGTCACAAAC-TCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAAT 159179 |||||||| || ||||| ||| ||| | ||||| || |||||||||||| || ||||| Sbjct 3537 GTGATCTTCCGTGTCACGAACGTCT-CGCCGCGTCGGGGCGACTCATGGTTGAAAAGAAT 3595 Query 159180 GCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAA 159239 ||| | ||||||||| || | |||||||||||| || |||||| || | Sbjct 3596 TCCGTTCACCGCGAACAGGCCGTACGCCTCGCGGTAATTCCGGGTCGCCCAGTACGCATA 3655 Query 159240 GAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTG 159293 || || | | ||||||| || || ||||| || ||| ||||||||| Sbjct 3656 GACTTTTGCGGCGCCGTACGGCGATCGCGGATACAACACCGTCGACTCATTTTG 3709 Score = 93.3 bits (102), Expect = 5e-14 Identities = 265/397 (67%), Gaps = 24/397 (6%) Strand=Plus/Plus Query 124514 CTCACCCGTGCCAATCACGAAATCTTCGGGA--ATCGACTGCTGCAACATAAGCCACATG 124571 ||| || ||| | | |||| | || ||||| |||| | ||||| ||| |||||||| Sbjct 3377 CTCGCCGGTGGCGAGCACGTAGTCGTCGGGTTCATCGGC--CTGCAGCATCCGCCACATG 3434 Query 124572 GCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGCTCG 124631 | | ||||| || || | |||||||||||| | ||||| || || ||||| | Sbjct 3435 CCCTCTACGTACTCAGGGGCATACCCCCAGTCGCGAATCGCATCGAGATTACCGAGGTAC 3494 Query 124632 A-----TTGGCTTGGCCGTCTT-GTTCCACTCCGCCAAACCCAGTGTAATCTTGCGCGTC 124685 | || | |||| ||| | ||| | || | | | ||| ||||| || ||| Sbjct 3495 AGCACGTTTTCGAGGCCCGCTTTGATCCG-TGCGACGGAGCGCGTG--ATCTTCCGTGTC 3551 Query 124686 ACAAAC---TCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACAC-GC 124741 || ||| ||| |||||||| ||||| |||||||| ||||| || || ||| || Sbjct 3552 ACGAACGTCTCG---CCGCGTCGGGGCGACTCATGGTTGAAAAGAATTCC-GTTCACCGC 3607 Query 124742 AAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGACAC 124801 |||| ||||||| ||||||||| || ||| ||| ||| || ||| || | | Sbjct 3608 GAACAGGCCGTACGCCTCGCGGTAATTCCGGGTCGCCCAGTACGCATAGACTTTTGCGGC 3667 Query 124802 GCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAGGTTGCTGAATCTT 124861 ||| || || ||| || || || || |||||||| | || || || | Sbjct 3668 GCCGTACGGCGATCGCGGATACAACACCGTCGACTCATTTTGTG---GTGGCGGAGTGGC 3724 Query 124862 CCCAAACATCTCCGAAGTACCCGCCTGATAGAATTTG 124898 ||||||||||||||| | |||||||||||| ||| Sbjct 3725 GCCAAACATCTCCGAACTCGACGCCTGATAGAACTTG 3761 >seq275772 Length=427 Score = 82.4 bits (90), Expect = 8e-11 Identities = 128/182 (70%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 55098 ACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATCG 55157 ||||||| ||||| ||||| || | ||||| || || || || || |||||| Sbjct 298 ACTTTGAGAAGCTGCACGAGGTCGCCAAAGTTGTCACCTACAATCTTAATCGCATCATCG 239 Query 55158 ACAAGAATTACTACCC---GACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCA 55214 || ||||| ||||| | | || |||||||||||| ||| | || ||||| || | Sbjct 238 ACGTTAATTATTACCCTGTGCCCGA---GGCGCGCAAGTCGAACATGCGTCACCGCCCGA 182 Query 55215 TCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACT 55274 ||| ||||||||| ||||| | ||||| ||| ||| ||| | | ||||| |||| Sbjct 181 TCGGCATCGGTGTCCAGGGTCTTGCCGATGCTTTCCAGATCCTCCGGCTCCCCTTTGACT 122 Query 55275 CG 55276 || Sbjct 121 CG 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545320696863400