Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq28654 122 5e-23 seq27511 105 4e-18 seq41046 102 5e-17 seq133356 100 2e-16 >seq28654 Length=3315 Score = 122 bits (134), Expect = 5e-23 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| ||||| || ||||| || |||||||| ||||| || ||| Sbjct 2388 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAA 2447 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||| || || || || || ||||| ||||| || || || Sbjct 2448 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 2507 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| | ||| || | ||| || || || || Sbjct 2508 ATGCCTTCCTTGTCT-TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAAC 2566 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 ||||| || || |||||||| || | ||||||||||| |||||||| ||||| Sbjct 2567 TTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGAT 2620 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||| || | ||| || || ||||||||| ||||| || || || Sbjct 1704 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAG 1763 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||| ||||| ||||| || | |||||| || || || || Sbjct 1764 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 1823 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||| |||||| ||| || ||||| | ||| || || | |||||| Sbjct 1824 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 1883 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || |||| ||||| |||||||||||||| Sbjct 1884 TCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1930 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | ||||| || || || ||| || || || || || || || Sbjct 1020 CCTCCTCGGAGACGGAGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGAC 1079 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| ||||||||||| || || || | ||| ||||| || || || Sbjct 1080 AGGGTGCGGCCATCTTCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGA 1139 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| ||| ||| || | |||||| | ||| |||||| ||| || Sbjct 1140 ATTCCTTCCTTATCT-TGAATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCAAC 1198 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 1199 TTCCAAAGTTATTGTTTTTCCAGTAAGTGTTTTGACAAATATTTGCAT 1246 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| ||||| || ||||| || || ||||||||||| |||||||| || Sbjct 2160 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGAT 2219 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| |||||||| || ||||| || | | |||||| || || || Sbjct 2220 AATGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGA 2279 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||| |||||| ||||||| || | | || ||||| ||| || Sbjct 2280 ATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACC 2339 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || || | || || ||||| |||||||| Sbjct 2340 TCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 2386 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || ||||| | ||| || ||||| |||||||| || || Sbjct 564 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 623 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | |||||||| ||||| || | |||||||||||| || || Sbjct 624 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 683 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | ||||| | || ||||| |||||| Sbjct 684 ATGCCCTCCTTGTCTTGGATC-TTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCAC 742 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || | || || ||||| |||||||| Sbjct 743 CTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 790 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| || || || || ||| || ||||| || ||||| || | || || Sbjct 1257 AGACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGA 1316 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || || ||||| || | |||||||||||| || || | |||||| Sbjct 1317 CCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCC 1376 Query 34609 TTGT-CTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC--TTCGCTCTCCACTTCCAC 34664 || | |||| || ||| | ||| || | |||||||| | | ||| ||||||| Sbjct 1377 TTATCCTGT-AT-TTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCT--ACTTCCAG 1432 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || || || || || ||||| ||||| || ||||| Sbjct 1433 GGTAATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 1474 >seq27511 Length=800 Score = 105 bits (116), Expect = 4e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || ||||| |||| |||||| || | ||| ||||| ||||| ||||||||||| Sbjct 443 CCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGAC 384 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| || ||||| || ||||| || | | ||||||||| || || Sbjct 383 AATGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGA 324 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | || || |||||| ||| |||| ||||| | ||||| || ||| |||| Sbjct 323 ATGCCTTCTTTGTCT-TGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCT-TCCA 266 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || ||||| || || | || || |||||||| ||||| Sbjct 265 CTTCCAAAGTGATAGTTTTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 217 >seq41046 Length=7774 Score = 102 bits (112), Expect = 5e-17 Identities = 165/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 34472 AATCGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTAT 34531 ||| || || || | ||| || | ||| | ||| | ||| |||||||||||||| | Sbjct 7147 AATAGTTACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGT 7206 Query 34532 AATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGT 34591 | || || | ||| || | ||||| ||||||||||| ||||| || ||||| || |||| Sbjct 7207 AGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGT 7266 Query 34592 CCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCG 34650 | || || | || ||||| ||| ||| || ||||||| | || || || | Sbjct 7267 CTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTAACATTTTCTATAGTATCAGAG 7326 Query 34651 CTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || | ||| || |||||||| || | || || || ||||| ||||| Sbjct 7327 GCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 7382 >seq133356 Length=434 Score = 100 bits (110), Expect = 2e-16 Identities = 127/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 46826 GGATGGCCCGTCAC--TTTTATTACACCCGAAGTGATGGCACGTAACGGATTTTATTATC 46883 |||||||||||||| ||||||| ||||||| | || | || || || ||||||| Sbjct 266 GGATGGCCCGTCACATTTTTATT--ACCCGAATCACTCGCGAGGAATGGCTTCTATTATC 209 Query 46884 TTGGAAGAGGTGATGAAGTTCGATGCGCCTTTTGCAAGGTTGAGATCATGCGTTGGGAAG 46943 | || | || |||||||| || ||||| ||||| || || || || ||| |||| | Sbjct 208 TGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATTATGAAATGGGTTG 149 Query 46944 AGGGTGATGATCCTGCCGAAGACCATAAACGTTGGGCTCCTCAGTGTCCGTTC 46996 ||| || ||||| ||| | ||||| | || ||||| |||||||| || ||| Sbjct 148 CGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCTCAGTGCCCTTTC 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313666774172339