Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028676.1 Length=149218 Score E Sequences producing significant alignments: (Bits) Value seq76033 107 2e-18 seq61277 91.5 1e-13 >seq76033 Length=7108 Score = 107 bits (118), Expect = 2e-18 Identities = 207/300 (69%), Gaps = 8/300 (3%) Strand=Plus/Minus Query 119665 GGTTCACGTTCGAGCTGCTCTTTCACCTGGTCGAAGTGATTGAGGTAGATGTGCGTGTCT 119724 || ||||| ||||||| | |||||||||||| ||| ||| ||||||||| ||| Sbjct 6563 GGGTCACGCGAGAGCTGCAATCTCACCTGGTCGACGTGGTTGTCGTAGATGTGGCAGTCC 6504 Query 119725 CCGAAGCTGCCGATCAGTTCGCCGACTTCGAGATTG-CATTCTCGAGCAATGATGTGAGT 119783 ||| | | | | | || ||||| ||||| | | | | || || || ||||| || Sbjct 6503 CCGCCGGTCCACACGAACTCACCGACCTCGAGGCCGGCCTGCGCG-GCCATCATGTGGGT 6445 Query 119784 CAGAAGAGCGTACGACGCGATGTTGAACGGAAGACCGAGGAACACATCG--ACTGACCTC 119841 || || || || ||||||||||||||||| | ||||||||||| ||| |||| || Sbjct 6444 GAGCAGGGCATAGGACGCGATGTTGAACGGCACACCGAGGAACAGGTCGGCACTGCGCT- 6386 Query 119842 TGGTTCCAGAT-GCACGAGAGCTTCTTGTTTCGTACGTAGAACTGGAAAGAGTAGTGACA 119900 | | || | ||| ||||| || || |||||||||||||| || ||| || Sbjct 6385 --GATAGAGCTGGCAGGAGAGTTTTCCGTCGGCGACGTAGAACTGGAAGAAGGCGTGGCA 6328 Query 119901 CGGAGGAAGAGACATCGATTCGATCTCAGGGACGTTCCATGCAGAAACCATGTGGCGCCG 119960 ||| || | | |||| |||||| |||||||| || || || |||| |||||| Sbjct 6327 CGGCGGCAACGCCATCTGCGGGATCTCCCCCACGTTCCAGGCGGAGACGATGTTGCGCCG 6268 >seq61277 Length=456 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 119784 CAGAAGAGCGTACGACGCGATGTTGAACGGAAGACCGAGGAACACATCGACTGACCTCTG 119843 ||| || ||||| ||||||||||||||||| | |||||||| || || | || | || Sbjct 345 CAGCAGGGCGTAGGACGCGATGTTGAACGGCACCCCGAGGAAGACGTCCGCCGAGCGTTG 286 Query 119844 GTTCCAGATG-CACGAGAGCTTCTTGTTTCGTACGTAGAACTGGAA-AGAGTAGTGACAC 119901 || | || || ||||||||||| || |||||||||||||| || | |||| ||| Sbjct 285 GTAC-AGCTGGCACGAGAGCTTGCCGTCGGCGACGTAGAACTGGAACAGCG-AGTGGCAC 228 Query 119902 GGAGGAAGAGACATCGATTCGATCTCAGGGACGTTCCATGCAGAAACCATGTGGCGCCGA 119961 || || || | ||| | || ||| ||||||||| || || || ||||| || || Sbjct 227 GGCGGTAGCGCCATGTCCTTGACCTCGCTGACGTTCCACGCCGACACGATGTGCCGACGG 168 Query 119962 CCGTGAGGATCCTTCAGGATAGATTCGATGACGTTATCGATCTGGTCGATGTAGCC 120017 || || | || | | | || | || || ||||||||||||||| ||| Sbjct 167 GAGTCCGGGTTCTCCCGCAGCGACTGGAGCACCAGGGCGATCTGGTCGATGTGGCC 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475716212489040