Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028747.1 Length=47618 Score E Sequences producing significant alignments: (Bits) Value seq249899 123 8e-24 seq184310 113 1e-20 seq153278 80.6 8e-11 >seq249899 Length=916 Score = 123 bits (136), Expect = 8e-24 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 3004 CGAGTACCACGACCACCAGATGGCGCTTGTCGCACTGGCGCATTTCCTCAACCTCGACGG 3063 |||| ||||||| | ||| ||| ||| || |||| | ||||||||||||||| Sbjct 156 CGAGGGCCACGACAAGGCGATTGCGATTGCCGGGTTGGCCAACCACCTCAACCTCGACGG 97 Query 3064 CAAGGGCGGCAGCTACGCGCTCGCCAGCGTGCAGGCCGACACGTTCGTGCAGTCGGTGCA 3123 |||||||||||| ||||| || |||||||||||| |||| |||||||||||||| | ||| Sbjct 96 CAAGGGCGGCAGTTACGCCCTGGCCAGCGTGCAGTCCGATACGTTCGTGCAGTCCGAGCA 37 Query 3124 GACCGTCGCCGAC 3136 ||||| |||||| Sbjct 36 GACCGAGGCCGAC 24 >seq184310 Length=1059 Score = 113 bits (124), Expect = 1e-20 Identities = 189/264 (72%), Gaps = 21/264 (8%) Strand=Plus/Plus Query 2246 CGCGAGGAGGCGCGAATCGCCTCGGTGCTGCGCGCGATCGGGCTGCCGATCCGCCGCACC 2305 |||||||| || | || ||||||| ||| |||| | |||||||||||| |||||| Sbjct 61 CGCGAGGACGCCCAGGTCACCTCGGTCCTGACCGCGGTGCAGCTGCCGATCCGGCGCACC 120 Query 2306 GACTGGCGGAT-CCGCCCGAACGGCGCCCGCCCCGAGGTGGTCGAGCACGTCGCCGCCTG 2364 | |||||| | ||| | |||||||| ||||| ||||| |||| || ||||| ||| || Sbjct 121 CAGTGGCGGGTGTCGCGC-AACGGCGCTCGCCCGGAGGTCGTCGCGCTCGTCG-CGCGTG 178 Query 2365 -CCTCGGTCTGCCGGTCGAGGGCGATGAATCCGA-CAAGCCGA--CGCCGCGC------A 2414 || ||||||| |||||||||| | || | ||||| |||||||| | Sbjct 179 ATCTGAATCTGCCGATCGAGGGCGAGTCCGCGGAGGAGGCCGACGCGCCGCGCGGCCGGA 238 Query 2415 CCCGGGGCCGGTTCTCGTGGGATCAACACCTGCGCCTAGCGCTCAA-GTCGCTG---CAA 2470 |||| ||||| |||||||||| ||||| | ||| ||| |||| || || Sbjct 239 CCCGTGGCCGATTCTCGTGGGCCGCGCACCT----CGAGCAGGCAATGTCGATGTTCCAG 294 Query 2471 TTCGGGCACGCGGTGTTCGAGCAG 2494 ||||| |||||| | ||||||||| Sbjct 295 TTCGGCCACGCGTTCTTCGAGCAG 318 Score = 93.3 bits (102), Expect = 1e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 3138 AGATCCGCGACGTCGCGCAGGCGCACGTCGTCGAGGACATCGTTGACGTCAACTGGGGCG 3197 ||||| ||||| |||| | |||| | ||||||||| |||||||| |||||||| Sbjct 917 AGATCTGCGACATCGCCAACCAGCACATAGTCGAGGACCTCGTTGACTGGAACTGGGGAC 976 Query 3198 AGGACGAACCTGCGCCGCTGCTGGTGTTCGACGAGATCGGCTCGCGCCAGGACGCG 3253 ||||| | || |||||||||||||||||||||||||| |||| || | |||| Sbjct 977 CCGACGAGCAGGCACCGCTGCTGGTGTTCGACGAGATCGGTTCGCAGCACGCCGCG 1032 >seq153278 Length=837 Score = 80.6 bits (88), Expect = 8e-11 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 26089 GTGGCGCATGAGCTCCTGCACGGTGCGCAGGTCGACGCCCGCCTCGAGCAGCGCCGTTCC 26148 ||||||||| ||||||||||| || ||||| || | || | |||||||| | |||||| Sbjct 170 GTGGCGCATCAGCTCCTGCACTGTCCGCAGATCCGCACCTTCGTCGAGCAGTGTCGTTCC 229 Query 26149 GAACCAATGCCGCAGGCAGTGCGCCGAGCCGACGACCCCGGCGCGGATCATCGC 26202 | |||| |||||||| |||| | | |||| ||| || |||| |||||| Sbjct 230 GTACCAGTGCCGCAGCGAGTGTGGGGTGCCGGGGACATCGACGCGCCGCATCGC 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151755022852680