Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028796.1 Length=49203 Score E Sequences producing significant alignments: (Bits) Value seq219746 334 2e-87 seq84561 154 5e-33 seq249899 127 6e-25 seq184310 113 1e-20 >seq219746 Length=1062 Score = 334 bits (370), Expect = 2e-87 Identities = 566/830 (68%), Gaps = 31/830 (4%) Strand=Plus/Plus Query 38240 CCCGGAGTGCACGAATCACTCGGTGGCCAAGGGCCGCAAGCGCGCCGACGCGCAGCCCGA 38299 |||| |||||| |||||||||| ||| ||||| ||||||||||||| || ||||| Sbjct 18 CCCGTCGTGCACCCATCACTCGGTCGCCCAGGGCATCAAGCGCGCCGACAAGCGCCCCGA 77 Query 38300 TCTGTTCGGCGAGGTCCTGCCCGACGCGGCGGCCGAGCGGTCCCGCGCCACGATGTGGGA 38359 | ||| ||||| ||||||||| || ||||| || || || || ||||||||||| Sbjct 78 CCCCAACGGGGAGGTGTTGCCCGACGACGCCGCCGAACGCTCGCGGGCGACGATGTGGGA 137 Query 38360 CGTGCCCCGGTTCGCCGAGGCGCACCGATACCAGGCCGTCATCGTCGAGAACGTCGTAGA 38419 ||| ||||||||||||| |||| |||| | || ||||||| ||||| || || Sbjct 138 CGTCGTCCGGTTCGCCGAGTACCACCAGTACCGATCAATCGTCGTCGAAAACGTTGTCGA 197 Query 38420 CGCGTGGCACTGGCAGCCGTTCCAGGCGTGGCTGATGGCCATGGACTCGCTGGACTACGA 38479 || || ||||| | |||| | ||||||| || | |||| | |||| |||| | Sbjct 198 CGTGTATTTCTGGCCGTTGTTCGCGCCGTGGCTCGCCGCGACGGACGCCCTGGGCTACAA 257 Query 38480 GCACCACATCGTGTTCCTGAACTCGATGCACGCTCAGGCGTTCGGGCCAGGGGCACCGCA 38539 ||| | ||||||| || |||||||||||||| ||| |||||| | ||| || || Sbjct 258 CCACGAGATCGTGTGGCTCAACTCGATGCACGCGCAGCTGTTCGGTCAGCCGGCCCCTCA 317 Query 38540 GTCACGGGACCGCATGTACGTGGTGTTCTGGCGCAAGGGCAACCAGCGGCCCGATGTCGA 38599 ||| ||||| | || || || || Sbjct 318 ATCAAGGGACAGGATCTATGTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------- 370 Query 38600 CCGGCTGACGCGGCCCGAGGCGGTGTGCCCGACGTGCGGGCAGGTCCGTGTGATGCAGTC 38659 || || || ||||||||| |||| || | |||| | || || | Sbjct 371 --------CGTGG------GCTGTGTGCCCGTCGTGTGGCCCTGTCCAGTCGGTGAAGAC 416 Query 38660 ATGGAAGCGGCCGGAGCGGGCCCCGTGGGGCCGCTACCGCGCCCAGTACGTGTACCGGTG 38719 |||||||| |||||||| | ||||||||||||||||||||||||| || | || Sbjct 417 CTGGAAGCGCCCGGAGCGT---CAGTGGGGCCGCTACCGCGCCCAGTACACGTTCTCCTG 473 Query 38720 CCCGTT--GACCACGTGCCGCAATCAGGTCTTGGAGCCGCTGTTCCGTCCGGCCGCCGAG 38777 |||| | || | || || | ||| |||| || | || || ||||| || Sbjct 474 CCCGAACGGCTCATGCGCGGCCA-CAG----TGGAACCCGACTGGCGACCCGCCGCAGAC 528 Query 38778 ATCATCGACTGGTCACTGCTGGGGCAGCGGATCGGCGACCGGGACAAGCCACTGGCGGAG 38837 |||||||||||||| |||| || || ||||| ||||| | || ||||| ||| Sbjct 529 ATCATCGACTGGTCGCTGCCCGGCACCCGCATCGGTGACCGCAAACGCCCGCTGGCCGAG 588 Query 38838 AAGACGATGGCGCGAATCCGGGCCGGCATCGAGCGGTACTGGGCGCCGTTCATCACCGAG 38897 ||||| ||| | || |||| |||||| ||||| || ||||||| |||||| |||||||| Sbjct 589 AAGACCATGACCCGTATCCAGGCCGGGATCGACCGCTACTGGGGACCGTTCCTCACCGAG 648 Query 38898 CACCGCCACGAGTACCGAGTCCGCGGCGTCGATGTGCCGTTGCAGACCGTGGCGGCGTCG 38957 ||||||||||||||||| ||||||| | || |||| ||||||||||||| || || Sbjct 649 CACCGCCACGAGTACCGCGTCCGCGACATCACCCGGCCGATGCAGACCGTGGCCGCCTCA 708 Query 38958 GGGAATCACTTCGGCCTGGCGGTGCCGGTCGAAGGCCGCGACGGAAAACAGGCCGTTCCG 39017 || || ||||||||||| || | || ||||| || ||||| || ||| |||| | || Sbjct 709 GGCAACCACTTCGGCCTCGCCATCCCCGTCGAGGGGCGCGAGGGCAAAGCGGCCCTGCCA 768 Query 39018 GTCGACCAGCCCGCGCGCACGATGACGACTCGCAACGAGACCGGGCTGGC 39067 || || | ||||| ||||| || ||||| ||||||| ||||| Sbjct 769 ATCTCGGCACCGGTACGCACCATGACCACCCGCAATGAGACCGCCCTGGC 818 >seq84561 Length=1800 Score = 154 bits (170), Expect = 5e-33 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 46901 CCACCCCGCGACACAGCACCTGCTCGATCAGTTCGCATACGAGCACCTCCCCGCTCATCT 46960 ||||||||||||||||||||||||||| | ||||| ||| ||| || |||| || || Sbjct 1591 CCACCCCGCGACACAGCACCTGCTCGACCTGTTCGATCACGGGCATCTGCCCGAGCACCT 1650 Query 46961 CCAAAAGGTGAGCAAGCCAATCGGCGATCTCGCGCACCAGATGGCCGACGAACTCGGCGA 47020 || ||| ||||| ||| |||| ||||| || |||||||||| ||| ||| Sbjct 1651 GCAGGTCGTGGCGAAGCCGATCCGCGACCTCGCCTACTCGATGGCCGACACCCTCAACGA 1710 Query 47021 CGGCGCCGAGAAGACCGTAGGGCTGCGAAAGCTGCTGGAGGCGAAGGATTGCCTCGTGCG 47080 |||| ||||||||| | |||||||| |||||||| || || ||||| ||||| ||||| Sbjct 1711 CGGCCCCGAGAAGAGCACCGGGCTGCGCAAGCTGCTCGAAGCCAAGGACTGCCTGGTGCG 1770 Query 47081 GCAGGCTGTGATCGACCA 47098 ||||| || |||||||| Sbjct 1771 CCAGGCCGTCATCGACCA 1788 >seq249899 Length=916 Score = 127 bits (140), Expect = 6e-25 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 3020 CCACGACCATCAGATGGCGCTCGTCGCGCTGGCGCATTTCCTGAACCTCGACGGCAAGGG 3079 ||||||| | ||| ||| | | || | |||| | ||| ||||||||||||||||| Sbjct 150 CCACGACAAGGCGATTGCGATTGCCGGGTTGGCCAACCACCTCAACCTCGACGGCAAGGG 91 Query 3080 CGGCAGCTACGCGCTGGCCAGCGTGCAGGCTGACACGTTCGTGCAGTCGGTGCAGACCGT 3139 |||||| ||||| ||||||||||||||| | || |||||||||||||| | |||||||| Sbjct 90 CGGCAGTTACGCCCTGGCCAGCGTGCAGTCCGATACGTTCGTGCAGTCCGAGCAGACCGA 31 Query 3140 GGCCGATGAGCACCGCGACATCG 3162 |||||| | || ||||||||| Sbjct 30 GGCCGACTACCAGTGCGACATCG 8 >seq184310 Length=1059 Score = 113 bits (124), Expect = 1e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 3154 GCGACATCGCCCAGGCGCACATCGTCGAGGACATCGTCGACGTGAACTGGGGTGAGGACG 3213 ||||||||||| | |||||| ||||||||| |||| ||| ||||||||| |||| Sbjct 923 GCGACATCGCCAACCAGCACATAGTCGAGGACCTCGTTGACTGGAACTGGGGACCCGACG 982 Query 3214 AGGCCGCGCCGCTGCTGGTGTTCGACGAGATCGGTTCGCGCCAGGACGCGACCGCCGCGG 3273 || || ||||||||||||||||||||||||||||||| || | |||| |||| || Sbjct 983 AGCAGGCACCGCTGCTGGTGTTCGACGAGATCGGTTCGCAGCACGCCGCGGTGGCCGAGG 1042 Query 3274 CGCTGCAGATGCTCGTC 3290 | || || | |||||| Sbjct 1043 CACTCAAGGTCCTCGTC 1059 Score = 96.9 bits (106), Expect = 1e-15 Identities = 157/220 (71%), Gaps = 17/220 (8%) Strand=Plus/Plus Query 2298 CTGCCGATCCGCCGCACCGACTGGCGGATCCGGCCGAACGGTGCCCGCGACGAGGTCGTT 2357 ||||||||||| |||||| | |||||| | || ||||| || ||| |||||||| Sbjct 103 CTGCCGATCCGGCGCACCCAGTGGCGGGTGTCGCGCAACGGCGCTCGCCCGGAGGTCGTC 162 Query 2358 GCGCACGTCGCCGCGTG-CCTCGGTCTGCCGATCGAGGGCGACGACCCGAATCA-GCCGA 2415 |||| ||||| |||||| || |||||||||||||||||| | || | | ||||| Sbjct 163 GCGCTCGTCG-CGCGTGATCTGAATCTGCCGATCGAGGGCGAGTCCGCGGAGGAGGCCGA 221 Query 2416 CG----GCG----CGCACCCGCGGCCGGTTCTCGTGGGACCAGCACCTGCGCCTGGCGCT 2467 || ||| || ||||| ||||| |||||||||| | |||||| | ||| Sbjct 222 CGCGCCGCGCGGCCGGACCCGTGGCCGATTCTCGTGGGCCGCGCACCTCGAGCAGGC--- 278 Query 2468 CAAGTCGCTG---CAGTACGGGCATGCGGTGTTCGAGCAG 2504 | |||| || |||| ||| || ||| | ||||||||| Sbjct 279 AATGTCGATGTTCCAGTTCGGCCACGCGTTCTTCGAGCAG 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156810334143590