Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028798.1 Length=50882 Score E Sequences producing significant alignments: (Bits) Value seq4597 159 1e-34 seq47396 80.6 9e-11 >seq4597 Length=157418 Score = 159 bits (176), Expect = 1e-34 Identities = 600/921 (65%), Gaps = 54/921 (6%) Strand=Plus/Plus Query 35000 GTCGACCTCCACCGAGATGTTCGTCGTCCAGTGCG---ACCCGGTGTCGGCCTTGATCCC 35056 ||| ||||| || ||||||||||| |||||||| | ||| | ||||||||| Sbjct 124421 GTCTACCTCGACGGAGATGTTCGTGGTCCAGTGAGTGGACCAG---TCGGCCTTGCAGTT 124477 Query 35057 GACGAACCGGTCGATCTGCGGGTCGTTCCAGTGCATCATCGCCATGCGAGCCGAGCGGCG 35116 || ||| | || | |||||||| |||| |||||| ||||| || || || || || Sbjct 124478 GATGAAGTCGAAGACTTCCGGGTCGTCCCAGACCATCATTGCCATACGCGCGGACCGACG 124537 Query 35117 AACGCCGCCAGCGACCACACACTGCGCGATGGCGTGGTCGATCCCCATCGCCGAGATCCC 35176 | || || ||||| || | ||||||| ||||||||||| ||| ||| ||| || Sbjct 124538 TGCACCACCTGCGACGACGGATGCCGCGATGTCGTGGTCGATCTGCATGGCCTCGATGCC 124597 Query 35177 GTCCAGGCGCTCCCCGTCGTGGGCGATCTCGCTGAGG--ATCTCGCATAC-GTCGATCAG 35233 | |||| | ||| || | || | ||||| ||| || | | | ||| Sbjct 124598 GGTCAGGTGACGGCCG--GTTG----CCTTGTTGAGGGTGTCTGTGATGCTGACAATCGA 124651 Query 35234 CATCCGAGCCAGAGGCAGCGGCCCCGAGGCCGTGCCGCCGAACGTCTTCAGCTTCGCGCC 35293 || |||| ||| || || || || || || ||||| ||||||| | |||| Sbjct 124652 TGTC---GCCAAAGGTGCTGGGCCAGAAGCGGTTCCACCGAATGTCTTCAACGGTACGCC 124708 Query 35294 GAACTGACGGACCCGAGACACGTCGTAGACGCGCTGGAAGTGGCTGACCTCATCCCGGTA 35353 | | ||| |||| |||| ||||| | ||| || |||| | |||| Sbjct 124709 GTGTCCTCTGACATCGGACAGGTCGAAGACG---AGTCCGTGCATGCCCTCTT--CGGTC 124763 Query 35354 GTGGGTGTCGATCAGGTCCACCAGAGCAGCGGCCCAGCCCTCTCGGGAGTCCTCCACG-- 35411 | ||||| |||||||||| | || ||| ||||||||| |||| |||||||||| Sbjct 124764 G-ACGTGTCAATCAGGTCCAGCCATGCTGCGACCCAGCCCTGGCGGGTGTCCTCCACGAC 124822 Query 35412 ATGAACGCACCAGCCCAGTCGGGGTCGTACTCCGTCGACAGGACGCCGGC---CTCCTTC 35468 |||| || ||| | || || | | ||| | ||||| ||| || |||||| Sbjct 124823 ATGAGTGCGGCAG--CTTTCCGGCGCCTTGTCCATGAACAGGCTGCCTGCCTGCTCCTTG 124880 Query 35469 ATCGCCTCGTAGTCCGGGTGGTCCGGGTCGCAGACGATGTGGACGTACAGCTCCTGCTGA 35528 | || ||||||||||||| | | || | || | ||| |||| |||| | Sbjct 124881 GTTGCTGCGTAGTCCGGGTGAGACTCGGCGATGGTGACGCCCACGAACAG--GCTGCCCA 124938 Query 35529 ACCTCCGCGTAGTCGGCCAGGAATCGGTTC---GAGTAGTTCGCCCCGACGCCGCCGCCC 35585 || || ||| |||| || ||| | |||||||| || ||||| ||||||||| Sbjct 124939 GGATCGGCTGAGT-GGCCTTGATCAGGTGCTGTGAGTAGTTGGCGCCGACACCGCCGCCC 124997 Query 35586 TCCATGAGCCGCATGAACG---TGAACTCGAAGTGGTCCGAGGGCTTCGGCCCCCAGCCC 35642 || | || || | ||| ||||| ||||||||| || ||| | | ||| || Sbjct 124998 TCGAACAGACG---GGACGCGAGGAACTTGAAGTGGTCACTGGTCTTTGCCGACCATCCG 125054 Query 35643 GAGACCCAGCAGTTGAAGAGGTGCTGGGCGTTCTTCACG---CCTGACGCCCACAGGTGG 35699 ||||| | |||||| ||| ||| |||||| || | ||||||||||| Sbjct 125055 GAGACGAAACAGTTG-CGAGAGAACGGG-----TTCACGGTTCCGGTGACCCACAGGTGG 125108 Query 35700 CGTCCACCGGGGAGGATCTTGAAGTCCTCCATCAGCCGGATCAGATCCTCGCGCTCACCG 35759 ||||| | ||||| |||||||||| | ||||| || || |||||| ||||| Sbjct 125109 CGTCCGGCCGGGAGCATCTTGAAGTTGTAGATCAGGTCGAACAAATCCTCACGCTCGTTC 125168 Query 35760 TCGAG-GTGGTAGCGCTCGTCCACCAGCGCCAGGTTCCCGTCGACCACGCGCCGCACCGT 35818 ||| ||| | | || ||| ||||||| ||||||||||| || || || Sbjct 125169 GGGAGCCAGGTTGAGGACGGGACGTAGC-CCAGGTTGCCGTCGACCACACGTGAGACGGT 125227 Query 35819 TTCCGGCCAGGTCTCCTTAGACCCGTCGGGCTTGGTCCGGGAGTAGGTCCGGTTGTAGAC 35878 || ||| |||||||| | ||||| |||||| | || ||||||||||| ||| || Sbjct 125228 CTCGAACCATGTCTCCTTCGTACCGTCAGGCTTGATGCGACTGTAGGTCCGGTCGTATAC 125287 Query 35879 CAGCTCCCCTGTCGGTCCCCA 35899 | || || |||||||||| Sbjct 125288 CTCCTTGCCGATCGGTCCCCA 125308 >seq47396 Length=7053 Score = 80.6 bits (88), Expect = 9e-11 Identities = 61/71 (86%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 3954 CATAGGCACGTAGCTCAATTGGTCAGAGCAGCGGTCTCCAAAGCCGCCGGCTGCAGGTTC 4013 || ||| |||||||||| ||| ||||||||||||||||||| |||| || ||||||||| Sbjct 4050 CAGAGGGGCGTAGCTCAACTGG-CAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTC 4108 Query 4014 GAGTCCTGCCG 4024 ||||||| || Sbjct 4109 AAGTCCTGTCG 4119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162165455694024