Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028813.1 Length=57766 Score E Sequences producing significant alignments: (Bits) Value seq232712 179 1e-40 seq148523 93.3 2e-14 seq189415 86.0 2e-12 >seq232712 Length=770 Score = 179 bits (198), Expect = 1e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42916 CATCAACCAGCTGCGACCGGGCGTCGTGGTGATCGAGAACGTAAGGGGGTTGCTCAGTGC 42975 ||||| ||| || |||||| || |||||| ||||| || || |||||| |||||||||| Sbjct 215 CATCACCCACCTCCGACCGCGCTACGTGGTCATCGAAAATGTCAGGGGGCTGCTCAGTGC 156 Query 42976 AAGGGCCTATCGCGCAATGGAATCCGAAGAGGCAGCTGTGGGAGACGGAGCAGATGGACC 43035 | ||| ||||| || |||||||||| | | | |||||||| | | |||| Sbjct 155 CCGAGCCCATCGCCCAGTGGAATCCGAGTCGAATGGTCTGGGAGACCACGACTCTCGACC 96 Query 43036 TGTTCTCCGGGCACTCGGTGCCGTACTCGGAGACCTTGCCGACCTCGGGTATGACGCGCA 43095 ||||||||| |||||||| |||||||||||||||||| ||||| |||||||||||||||| Sbjct 95 TGTTCTCCGAGCACTCGGAGCCGTACTCGGAGACCTTTCCGACATCGGGTATGACGCGCA 36 Query 43096 ATGGACGACTGTTGCCGCTTCCGCAGTCG 43124 ||| |||||| |||| ||||| |||| Sbjct 35 GTGGGTCACTGTTCCCGCCTCCGCCGTCG 7 Score = 100 bits (110), Expect = 1e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 42627 TCGGTTCGCTGTTCTCCGGCGCTGGCGGCCTCGACATCGCCGTCGAGCAGTTCTTCGGCG 42686 |||| || || ||||| || |||||||||||| |||| ||| ||||||||| | Sbjct 448 TCGGATCACTCTTCTCGGGGTACGGCGGCCTCGACCTCGCGTGTGAGGCGTTCTTCGGTG 389 Query 42687 CCCGCACGGTGTGGCATTGCGAGCTGAACCCGGCCGCGTCCAAGGTGCTCGCGCACCGCT 42746 | || | ||||| ||| | |||| || ||||| | | ||||| |||| || Sbjct 388 CGACGACCGCATGGCACGCCGACATCGACCCTGCTGCGTCGCGGATCCTCGCCCACCACT 329 Query 42747 GGCCCGGTGTGCCGAACCTCGGCGACATCACCGCGGTCGACTGGTCAGAAGTCGAGCCGG 42806 |||| |||||||||| ||||||||||||||| |||||||| | | ||||| || | Sbjct 328 GGCCGACCGTGCCGAACCACGGCGACATCACCGCCATCGACTGGACTGCGGTCGAACCAG 269 Query 42807 TCGACATTCTCGCTGGCGGATTTCC 42831 | ||| | || | ||||| || || Sbjct 268 TGGACGTGATCACCGGCGGGTTCCC 244 >seq148523 Length=1916 Score = 93.3 bits (102), Expect = 2e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 43934 CCCGCGCCGTCGCCGACCGAGCCGAACAAGAACGGCAATCCCCGGCTGGCCGCCGCGTTC 43993 || ||||| | |||||||| ||||||| || ||||| ||||||||| |||| |||| Sbjct 544 CCTGCGCCCGCACCGACCGAACCGAACACCAAGGGCAACCCCCGGCTGTCCGCGCTGTTC 603 Query 43994 CCGGAATGGATGATGGGCTGGCCCGCCGGCTGGGTCACTGA 44034 ||||||||||||||| | | ||||||||||||||| || Sbjct 604 CCGGAATGGATGATGTTCCTCCGCGCCGGCTGGGTCACCGA 644 Score = 80.6 bits (88), Expect = 1e-10 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 43257 CTGATGCCCACACCGCGCGCGACGGACGGCACGAAGGGAGGCCCGAACCAGCGCGGATCA 43316 || ||||| || || || ||| | ||||||||||| || || ||||||||||| || || Sbjct 326 CTCATGCCGACGCCACGGGCGTCCGACGGCACGAAAGGCGGACCGAACCAGCGGGGGTCG 385 Query 43317 TCGGGGGACCTGATGCTGCCGAGCGCGGT 43345 || || ||||| |||||||| ||||| || Sbjct 386 TCCGGAGACCTCATGCTGCCCAGCGCCGT 414 >seq189415 Length=2896 Score = 86.0 bits (94), Expect = 2e-12 Identities = 133/189 (70%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 39798 GTGGCGTGACCAAGCGTTGTGCTCCCAGGTCGATCCCGAGCTGTTCTTCCCCGAAAAGGG 39857 ||||| |||| ||| ||||| | ||| ||| |||||| |||||||||||| ||||| Sbjct 570 GTGGCAGGACCGGGCGCTGTGCGCGCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGG 511 Query 39858 AGGAAACGCGAAACCC---GCAAAGCGGATCTGCGGTATGTGCGACGTCCGGGACGAATG 39914 || | ||| | | || ||||| |||||| ||||| || || || || Sbjct 510 CGG---CTCGACCCGCGAGGCCAAGCGCATCTGCCAGGGCTGCGAGGTGAAGGCGGAGTG 454 Query 39915 CCTTCAGTGGGCGCTGGACAACAACGAACAGTTCGGCATCTTCGGCGGCCTGTCCGAGCG 39974 ||| ||| |||||| |||| |||| | |||||| |||| ||||| || |||||||| Sbjct 453 CCTCGAGTACGCGCTGCACAAGGACGAGCGGTTCGGTATCTGGGGCGGTCTCTCCGAGCG 394 Query 39975 TGAACGCCG 39983 || || || Sbjct 393 GGAGCGTCG 385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184121772997888