Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028832.1 Length=61511 Score E Sequences producing significant alignments: (Bits) Value seq84152 399 9e-107 seq134864 134 5e-27 seq171065 123 1e-23 seq231474 111 6e-20 seq12676 105 3e-18 seq74518 91.5 6e-14 >seq84152 Length=5826 Score = 399 bits (442), Expect = 9e-107 Identities = 573/799 (72%), Gaps = 19/799 (2%) Strand=Plus/Plus Query 54862 CGACCGGTACCCGTTCACCGCCGCGCGCATCGTCGAACTCGAC---CATCGCGCGTTCGA 54918 ||| || | | |||||||||| ||||| |||| || |||||| || || || ||| Sbjct 4634 CGATCGCTTCGCGTTCACCGCGGCGCGGATCGCCGCACTCGAGGCACAGGCCGAGTCCGA 4693 Query 54919 -GCTGAACATCGACCTGACGCACTCGCCGAAATGGCGCGAACAGCTCGGAACACTCGGCG 54977 | || ||||||| ||||||| ||| ||||| || |||||||| | ||||||| Sbjct 4694 CGGTG----TCGACCTCGGGCACTCGAAGAAGTGGCGTGAGCAGCTCGGGTCGCTCGGCG 4749 Query 54978 GCGGCAACCATTTCATTGAACTGTGCCTCGACCAGCTCGACCGCGTCTGGCTGTTCCTGC 55037 |||||||||| ||||| || |||||||||||| || ||| || || ||| ||||||||| Sbjct 4750 GCGGCAACCACTTCATCGAGCTGTGCCTCGACGAGTCCGATCGGGTGTGGATGTTCCTGC 4809 Query 55038 ATTCCGGGTCTCGTGGTGTCGGCAACAAGATCGCGCAGAAACACATCAAGGCCGCCCAGA 55097 | ||||| || || |||||||||||| |||||||||| ||||||| | ||| |||| Sbjct 4810 ACTCCGGTTCGCGGGGTGTCGGCAACCGGATCGCGCAGCGACACATCGCGATCGCGCAGA 4869 Query 55098 AC---GCCTGCGAGGG---CATCGAACTGCCGTCCAAGGATCTGGCGTACCTCACCGAAG 55151 | ||| | || | ||||| || ||| | ||| || |||||||| | | Sbjct 4870 AGCTGGCCAGGAAGTGGCACATCGTGCTCCCGAACCCGGACCTCGCGTACCTGCCGTCCG 4929 Query 55152 GCACACCCCAATTCTACGAGTACCTACGTGAACTGCATTGGGCGCAACGATTCGCGTACT 55211 || || | || | | |||||| || || ||| ||||| || || |||||| | Sbjct 4930 AGACGCCGGAGCTCGAGGTGTACCTCCGGGATCTGGCGTGGGCACAGCGGTTCGCGCTCG 4989 Query 55212 CGAACCGCGCCGAAATGATGGACCGGTTCGCGCGCGCATTCGCGAACTGGATCGG-CACA 55270 ||||||||| || |||||||| || ||| || || |||||| ||||| | || ||| Sbjct 4990 AGAACCGCGCTGAGATGATGGATCGCTTCCGGCAGGCGTTCGCGCACTGGGTAGGTCACG 5049 Query 55271 CCCGTCGACGACGTCTCAGCGTTCATCGCCGAAACCATCAACACCCACCACAACTACACC 55330 | || ||| || | ||| || |||| |||||||||||||||||||||||| Sbjct 5050 ACGGT-GACC-CGGCCGAGC--TCGAGACCGAGCGGATCAACACCCACCACAACTACACC 5105 Query 55331 GAGCAGGAAGAACACGGCGGCCGGTTCGTGTGGCTCACCCGCAAAGGCGCCATCGACGCA 55390 | | || |||||||||| | ||||||||| |||||||| || || |||||||| Sbjct 5106 GTCCGAGAGCGACACGGCGGCAAGGACGTGTGGCTGACCCGCAAGGGTGCGATCGACGCG 5165 Query 55391 CACGAAGGTGTGCGTGGCCTCATCCCCGGCAGCATGGGCACCTGCTCATACGTCGTCACC 55450 ||||| |||||||| ||| ||||||| ||| ||||| || | || ||| |||| ||| Sbjct 5166 CACGAGGGTGTGCGGGGCATCATCCCGGGCTCGATGGGGACGCGGTCCTACATCGTGACC 5225 Query 55451 GGCAAAGGCAACCCCGAAGGGTTGTGCTCAGCACCGCACGGCGCTGGCCGCCGCTACTCC 55510 ||||| || || || || |||| || || ||||||||||| || || || | ||| Sbjct 5226 GGCAAGGGACACGGCGGCGGTCTGTGTTCGGCGCCGCACGGCGCGGGGCGTCGGTTCTCA 5285 Query 55511 CGCACGAAAGCCCGGAAACTGTTCACCGCAGACGATTTGGCGGACCGTATGCGCGGCATC 55570 || | | ||| | | || ||||| | |||| | | || | ||| ||| ||| Sbjct 5286 CGGGCCGAGGCCAAGCGTCGGTACACCGAGGCCGATCTCGAGGCCGCGATGACCGGGATC 5345 Query 55571 GAATACCGGCACGGCGACGCGTGGATCGACGAAATCCCCGACGCGTACAAGCCGATCGAC 55630 || ||||||||||| | | |||||||||||| ||||| | ||||||||| |||||| Sbjct 5346 GAGTACCGGCACGGGGCGGAGTGGATCGACGAGATCCCGCAGGCGTACAAGAGCATCGAC 5405 Query 55631 GTCGTCATGCACGACGCCG 55649 ||||| ||| |||||||| Sbjct 5406 GTCGTGATGGCCGACGCCG 5424 Score = 154 bits (170), Expect = 6e-33 Identities = 172/227 (76%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 54520 CAACCCCCAACTCGTCAACTTCGCCAGCGAAATCGACGACGACACACTGAAGCAAGCCGA 54579 ||||| | | || ||||||||||| ||| |||||||| | || | | || ||| | Sbjct 4369 CAACCTCAAGCTGCTCAACTTCGCCTCCGAGATCGACGAGAAGACGATCGACCAGGCCAA 4428 Query 54580 ACAAACCGCCAGC-ATGCCGTTCGTGTATCCGCACGTCGCACTCATGCCCGACGCACATT 54638 | |||| |||| |||| |||||| | |||||||| || | ||||| || || || | Sbjct 4429 GGAGACCG-CAGCGCTGCCCTTCGTGCACCCGCACGTGGCGTTGATGCCGGATGCGCACT 4487 Query 54639 TCGGCAAAGGCAGCTCGGTCGGCACAGTCATCCCCACCCAAGGCGCCGTCATCCCGGCCG 54698 |||||| || | ||||||| || |||||||| || | ||||||||||||||||| Sbjct 4488 ACGGCAAGGGATCCGCGGTCGGTACCGTCATCCCGACGGTCGACGCCGTCATCCCGGCCG 4547 Query 54699 CCGTCGGCGTCGACATCGGCTGCGGCATGATCGCAGCCCGCACCACC 54745 | ||||| ||||||||||| |||||||||||||| | ||| |||||| Sbjct 4548 CGGTCGGGGTCGACATCGGGTGCGGCATGATCGCCGTCCGGACCACC 4594 >seq134864 Length=649 Score = 134 bits (148), Expect = 5e-27 Identities = 415/636 (65%), Gaps = 31/636 (5%) Strand=Plus/Minus Query 55006 CGACCAGCTCGACCGCGTCTGGCTGTTCCTGCATTCCGGGTCTCGTGGTGTCGGCAACAA 55065 |||| || || |||| ||||| |||||||||| |||||||| || |||||||||||| Sbjct 634 CGACGAGACCGGCCGCATCTGGTTGTTCCTGCACTCCGGGTCCCGCGGTGTCGGCAACCG 575 Query 55066 GATCGCGCAGAAACACATCAAGGCCGCCCAGAACGCC----TG--CGAGGGCATCGAACT 55119 |||||| ||| | |||||| || |||| ||| | || | | || ||||| || Sbjct 574 GATCGCCCAGCACCACATCGGGGTTGCCCGGAAGTCGATGGTGGACAACGGGATCGAGCT 515 Query 55120 GCCGTCCAAGGATCTGGCGTACCTCACCGAAGGCACACCCCAATTCTACGAGTACCTACG 55179 | | ||||| |||||||| || ||||| | ||| ||| ||||| Sbjct 514 GGCAGATCGCGATCTCGCGTACCTGGTGGAGGGCACCGAGGAGTTCGACGCCTACCTGGC 455 Query 55180 TGAACTGCATTGGGCGCAACGATTCGC-GTACTCGAACCGCGCCGAAATGATGGACCGGT 55238 || || ||||| || | ||||| | |||| ||||||| ||| |||||||| || Sbjct 454 CGAGCTCACCTGGGCACAGCAGTTCGCCGCACTC-AACCGCGACGAGATGATGGAGCGTG 396 Query 55239 TCGCGCGCGCATTCGCGAACTGGATCGGCACACCCGTCGACGACGTCTCAGCGTTCATCG 55298 ||| ||| || | | |||||||||| | || || | || Sbjct 395 TCGTGCGGTCACTGCAGTTCTGGATCGGCGCGGAGGTGGAGGT---------GT------ 351 Query 55299 CCGAAACCATCAACACCCACCACAACTACACCGAGCAGGAAGAACACGGCGGCCGGTTCG 55358 |||| | || | ||||||||||||||| | | || ||| ||| | | Sbjct 350 CCGAGGACCTCGGCTGCCACCACAACTACACGGCCCGCGAGACGCACCACGGTGAGCTGC 291 Query 55359 TGTGGCTCACCCGCAAAGGCGCCATCGACGCACACGAAGGTGTGCGTGGCCTCATCCCCG 55418 ||||| | ||||||| || |||||| |||| | | || || | || || ||||| | Sbjct 290 TGTGGGTGTCCCGCAAGGGTGCCATCAACGCCGAGGTCGGCGTCCCCGGGCTGATCCCGG 231 Query 55419 GCAGCATGGGCACCTGCTCATACGTCGTCACCGGCAAAGGCAACCCCGAAGGGT---TGT 55475 | ||||| || || |||||||| |||||| || ||| || || ||| Sbjct 230 GGTCGATGGGTACGGCGTCGTACGTCGTGTCCGGCAGGGGGAAC---GAGCAGTCCCTGT 174 Query 55476 GCTCAGCACCGCACGGCGCTGGCCGCCGCTACTCCCGCACGAAAGCCCGGAAACTGTTCA 55535 || ||||||||||| || ||||| |||||| || ||||| || || || |||| Sbjct 173 GCAGTGCACCGCACGGAGCAGGCCGGGCCTACTCGCGGACGAAGGCGCGCAAGACCTTCA 114 Query 55536 CCGCAGACGATTTGGCGGACCG-TATGCGCGGCATCGAATACCGGCACGGCGACGCGTGG 55594 | | ||||| | |||| | | ||| ||| ||||| ||||| || || |||| Sbjct 113 CGGTCGACGACCT-GCGGGCGGCGATGGTCGGGATCGAGTACCGCGACACGGAGGCGTTC 55 Query 55595 ATCGACGAAATCCCCGACGCGTACAAGCCGATCGAC 55630 ||||||| ||||||| ||| |||||| |||||| Sbjct 54 GTCGACGAGATCCCCGGCGCCTACAAGGACATCGAC 19 >seq171065 Length=1298 Score = 123 bits (136), Expect = 1e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 36103 CGACGCGGTGAATCACCCGTCGCACTACACGTCCCACCCGTCCGGCGTCGAGTGCATCAC 36162 |||| ||||||| ||||| ||||||| | | || || |||||| ||||||||| Sbjct 16 CGACTCGGTGAACAACCCGCAGCACTACGTGACGCATCCCAGCGGCGTGGAGTGCATCGA 75 Query 36163 CATCACCGAACACATGGGGTTCAACCTCGGCAACGCGCTCAAATACATCTGGCGCTGCGA 36222 |||||||| |||||||| | | |||||||||| | |||| ||| |||||||| ||| Sbjct 76 GATCACCGAGCACATGGGCTACCTGCTCGGCAACGTGATCAAGTACGTCTGGCGCGCCGA 135 Query 36223 CCTGAAGAACGACGCAATCGAAGATCTGCGCAAGGCCCGGTTCTACATCGACCGCGAAAT 36282 | | ||| ||| ||| | || || || ||||||||||||||| | ||||| || || Sbjct 136 CATCAAGGGCGAGGCACTGGAGGACTTGAAGAAGGCCCGGTTCTACCTGGACCGGGAGAT 195 Query 36283 CGC 36285 ||| Sbjct 196 CGC 198 >seq231474 Length=516 Score = 111 bits (122), Expect = 6e-20 Identities = 328/497 (66%), Gaps = 33/497 (7%) Strand=Plus/Plus Query 55016 GACCGCGTCTGGCTGTTCCTGCATTCCGGGTCTCGTGGTGTCGGCAACAAGATCGCGCAG 55075 ||||||||||||||||||||||| ||||| || || || ||||||||||||||||| ||| Sbjct 7 GACCGCGTCTGGCTGTTCCTGCACTCCGGCTCCCGCGGCGTCGGCAACAAGATCGCCCAG 66 Query 55076 AAACACATCAAGGCCGCCCAGAACG-CCTG---CGA-----GGGCATCGAACTGCCGTCC 55126 | |||||||||| ||| || || |||| ||| | | ||||| ||||| | Sbjct 67 CACCACATCAAGGTCGC---GAGCGACCTGTGCCGACGCTGGTGGATCGACCTGCCCGAC 123 Query 55127 AAGGATCTGGCGTACCTCACCGA-AGGCACACCCCAATTCTACGAGTACCTACGTGAACT 55185 || || || ||||| || || || | | |||| | ||| | || || | Sbjct 124 CCCGACCTCGCCTACCTGGTGGAGGGGGACGACAC-GTTCTGGGCCTACATCCGCGAGAT 182 Query 55186 GCATTGGGCGCAACGATTCG-CGTACTCGAACCGCGCCGAAATGATGGACCGGTTCGCGC 55244 || ||||| || | |||| | | ||| ||||||| || |||||| |||| || | Sbjct 183 GCGGTGGGCCCAGCACTTCGCCCTGCTC-AACCGCGAGGAGATGATGCACCGCGTCCAGG 241 Query 55245 GCGCATTCGCGAACTGGATCGGCACACCCGTCGACGACGTCTCAGCGTTCATCGCCGAAA 55304 | ||||| || | | ||| | |||| | | || | ||| | Sbjct 242 AGGTCGTCGCGGACGAGCTGGGCGCGACCGT-GCAGGCG--------------GACGAGA 286 Query 55305 CCATCAACACCCACCACAACTACACCGAGCAGGAAGAACACG-GCGGCCGGTTCGTGTGG 55363 | |||||| |||||||||||||||||||| | || | | ||| || |||||| Sbjct 287 CGATCAACTGCCACCACAACTACACCGAGC-GCGAGCGCGTGTTCGGTCGCGAGGTGTGG 345 Query 55364 CTCACCCGCAAAGGCGCCATCGACGCACACGAAGGTGTGCGTGGCCTCATCCCCGGCAGC 55423 | ||||||| ||||| ||| || | | |||| || || || ||||||||| Sbjct 346 GTGTCCCGCAAGGGCGCGATCCGTGCGGGCAAGGGTGATCGCGGGCTGATCCCCGGCTCG 405 Query 55424 ATGGGCACCTGCTCATACGTCGTCACCGGCAAAGGCAACCCCGAAGGGTTGTGCTCAGCA 55483 |||||||| || ||||||||||| ||| ||| |||| | || || || Sbjct 406 ATGGGCACGGCGTCGTACGTCGTCACGGGCCTGGGCTACCCGCCGTCGCTGATGTCGGCC 465 Query 55484 CCGCACGGCGCTGGCCG 55500 |||||||| || ||||| Sbjct 466 CCGCACGGGGCCGGCCG 482 >seq12676 Length=358 Score = 105 bits (116), Expect = 3e-18 Identities = 134/179 (75%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 54551 ATCGACGACGACACACTGAAGCAAGCCGAACAAACCGCC-AGCATGCCGTTCGTGTATCC 54609 ||||||||| ||| || ||| ||| | || |||||| ||| | | | ||||| || Sbjct 122 ATCGACGACCTCACGCTCGCGCAGGCCAAGCAGACCGCCGAGCTCGACAT-CGTGTCGCC 180 Query 54610 GCACGTCGCACTCATGCCCGACGCACATTTCGGCAAAGGCAGCT-CGGTCGGCACAGTCA 54668 | || | || || ||||| ||||| || | ||||| || ||| ||||||| | |||| Sbjct 181 GTACCTGGCGCTGATGCCGGACGCGCACCTGGGCAAGGG-AGCGACGGTCGGTTCCGTCA 239 Query 54669 TCCCCACCCAAGGCGCCGTCATCCCGGCCGCCGTCGGCGTCGACATCGGCTGCGGCATG 54727 |||||||| | ||| ||||||||||||| ||||| || |||||||||||||| ||| Sbjct 240 TCCCCACCAGGGACGCGATCATCCCGGCCGCGGTCGGGGTGGACATCGGCTGCGGGATG 298 >seq74518 Length=2537 Score = 91.5 bits (100), Expect = 6e-14 Identities = 232/344 (67%), Gaps = 12/344 (3%) Strand=Plus/Minus Query 25075 CATCCAAAGATCGCTGTGATGCTCGACGTCGAATCGTGGGGCGGGCAGATCCGCGGCGAC 25134 ||||||| | | | ||||||||||||||||||| |||||| | | ||||||| Sbjct 1122 CATCCAAGGGTGGTGCTGATGCTCGACGTCGAATCC---GGCGGGAACCCCGGCGGCGAT 1066 Query 25135 CAGTCGTCCGGCATCAATGCTGCGTTCGAGCAGATCGCCGACTG-GCTGGGGG--ACCGG 25191 |||| | | ||||| | | | | | ||| ||| | || || || || Sbjct 1065 GCGTCGGACTGGATCAACCGCACCTACTGGAACCTCGTCGAATACGCCGGTGGCAACGCT 1006 Query 25192 CGGCGTGTGATCGGCTACGGCAATACCGGTGACCTCAACGCGCTATGGCCGCGCAAACCT 25251 ||||| ||||||||||||| || | | ||| || || | | ||| || | || Sbjct 1005 CGGCGGGTGATCGGCTACGCGAACGCGGCCGACTTCGCCGGGATGTGG-CGTGTTCGCCC 947 Query 25252 GAAGGGGC-GCGGCTGGTGGTCGCCGGATACGG--GAAGCTGCCTACCTACCCGGGCATG 25308 | ||| | ||| || | | |||||| ||||| | | | | |||| |||| || | Sbjct 946 GGCGGGCCTGCGAATGATCGGCGCCGGTTACGGCCGCA-ATCCGAACCTGGCCGGACA-G 889 Query 25309 ATCGCCCACCAATACACCGACGGGCAGGGCTACGGCGGTGGCCTGCCTGAAGGCGCGCCA 25368 ||||| ||||| ||||||||||| | ||| | |||||| || || || ||||| || || Sbjct 888 ATCGCGCACCAGTACACCGACGGCCGGGGTTTCGGCGGCGGACTCCCCGAAGGGGCACCG 829 Query 25369 CCGTTCGGGCGGTGCGACATGAACGCGGCAAACGGGCTGACTGC 25412 |||||||| |||||||||||| | || |||| || || || Sbjct 828 CCGTTCGGCAACTGCGACATGAACTCCGCCGACGGCCTCACGGC 785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196066341316158