Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028876.1 Length=109800 Score E Sequences producing significant alignments: (Bits) Value seq68307 212 4e-50 seq24208 185 6e-42 seq101977 152 4e-32 seq216206 104 2e-17 seq50100 89.7 4e-13 seq145472 82.4 5e-11 >seq68307 Length=2902 Score = 212 bits (234), Expect = 4e-50 Identities = 262/358 (73%), Gaps = 3/358 (1%) Strand=Plus/Plus Query 96502 GACCGCCGCCTCAATCTCTCCGTCGGATACGAAAGCGCCCTGTATCCGGATGGCACCCCG 96561 |||| | ||| ||||| |||||| | ||| |||||||| |||||||||| | Sbjct 1678 GACCACGGCCGAGATCTCCTCGTCGGTGATGAACGCGCCCTGCATCCGGATGGGGCGGTT 1737 Query 96562 CGCCCCCACGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTC 96621 ||| |||| || | ||| | ||||| ||||| || ||||||| ||| || || || Sbjct 1738 CGCGCCCATCGGGATGAAGAGTCCGTCGCCCATGCCGATGAGCTTCTCCGCGCCCGGCTG 1797 Query 96622 GTCCAGGATCACCCGGCTATCGGTGAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCAC 96681 || ||||| || || ||||| || || | || ||||||| ||||| ||||| || Sbjct 1798 ATCGAGGATGACGCGCGAGTCGGTCAGCGACGACGTCGCGAACGCGAGCCGCGACGGGAC 1857 Query 96682 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 96741 ||||| ||||| ||||| ||||| || || || || || ||||| ||||| || || || Sbjct 1858 GTTGGTCTTGATCAGGCCGGTGACGACGTCGACCGACGGTCGCTGGGTCGCGAGCACCAG 1917 Query 96742 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 96801 || ||||| || ||||| |||||||||| ||||||||| || | ||||||| || Sbjct 1918 GTGGATACCCGCCGCGCGGGCCTTCTGGGTGATGCGGACGATCGCGTCCTCGACGTC--- 1974 Query 96802 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGG 96859 |||| || |||||||||||| ||||| |||||||| | ||| |||||||||| Sbjct 1975 CTTGGGCGCGGTCATCATGAGGTCGGCGAGCTCGTCGACGATGGCCAGGATGTAGGGG 2032 Score = 123 bits (136), Expect = 2e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 96986 AGGTGGGGGATACCGTTGTACGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGT 97045 || || ||||| || | |||||| || ||||| ||||||||||||||||| | ||| | Sbjct 2219 AGATGCGGGATGCCCTCGTACGGCGTCAGTTCGACCATCTTCGGGTCGATGAGGATCATC 2278 Query 97046 TTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTG 97105 ||| || || | || ||| |||| || |||| ||||||||| | ||||||| Sbjct 2279 CGGACGTCGTCCGGGGTCGCCCGGGTCAGCAGTGACACCAACATCGAGTTCACGAAGCTG 2338 Query 97106 GACTTACCTGATCCGGTGGCGCCAGCCACCAGCAGGTGCGGCATTTTGGCCAGGTT 97161 ||||| || || ||||||| ||| || || |||||||| ||||| ||||| ||||| Sbjct 2339 GACTTGCCCGAACCGGTGGAGCCGGCGACGAGCAGGTGGGGCATCTTGGCGAGGTT 2394 >seq24208 Length=1566 Score = 185 bits (204), Expect = 6e-42 Identities = 221/298 (74%), Gaps = 3/298 (1%) Strand=Plus/Plus Query 96562 CGCCCCCACGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTC 96621 |||||||| || ||||| | |||||| ||| || | |||| |||||| || || Sbjct 431 CGCCCCCATCGGGAGGAACAGCCCGTCGCCCTGGCCGACCAGCTTCTCGGCGCCCGGCTG 490 Query 96622 GTCCAGGATCACCCGGCTATCGGTGAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCAC 96681 ||| ||||| |||||||| ||| ||| | |||||||| | ||| | |||||||| Sbjct 491 GTCGAGGATGACCCGGCTGTCGCCGAGGCTCGACGTGGCGAAGGCGAGTCGCGACGGCAC 550 Query 96682 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 96741 ||||| ||||| || || || || |||||||| || |||||||||||||| || ||||| Sbjct 551 GTTGGCCTTGATCAGACCCGTCACCACATCCACCGACGGCCGCTGCGTCGCGAGCACGAG 610 Query 96742 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 96801 || || ||||| |||||||| ||||| |||||| || || ||||||| || Sbjct 611 GTGGATGCCGGCGGCGCGCGCGAGCTGGGTGATGCGCACGATCGACTCCTCGACGTC--G 668 Query 96802 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGG 96859 | | | || ||||||| ||||| || || ||||||||||| |||| || ||||||| Sbjct 669 CGCGGCG-CGACCATCATCAGGTCGGCCAGCTCGTCGACCACGACCAGGAGGTAGGGG 725 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 97087 CATCGAGTTGATGAAGCTGGACTTACCTGATCCGGTGGCGCCAGCCACCAGCAGGTGCGG 97146 |||||||||||||||||| ||||| || |||||||||| ||| || || ||||||||||| Sbjct 1013 CATCGAGTTGATGAAGCTCGACTTGCCGGATCCGGTGGAGCCGGCGACGAGCAGGTGCGG 1072 Query 97147 CATTTTGGCCAGGTTC 97162 ||| || || |||||| Sbjct 1073 CATCTTCGCGAGGTTC 1088 >seq101977 Length=1174 Score = 152 bits (168), Expect = 4e-32 Identities = 189/254 (74%), Gaps = 5/254 (2%) Strand=Plus/Plus Query 96607 CTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGTGATGCTG-TGGCGAACG 96665 |||||| || || ||| ||||| || || || ||||| || || |||| ||||||| | Sbjct 3 CTCGGCGCCCGGCTGGTCGAGGATGACGCGACTGTCGGTCAGCGA-GCTGGTGGCGAAGG 61 Query 96666 AGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCT 96725 | || | || |||||||||| ||||| || || ||||| || || ||||||||||| | Sbjct 62 ACAGTCGGGAGGGCACGTTGGTCTTGATCAGACCGGTGACGACGTCGACGGAGGGCCGTT 121 Query 96726 GCGTCGCCAGGACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGT 96785 | || || ||||| || || || ||||| || || |||||||||| ||| ||||| || Sbjct 122 GGGTGGCGAGGACCAGGTGGATCCCGGCGGCCCGGGCCTTCTGGGTGATCCGGACGATCG 181 Query 96786 TGGCCTCGACTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTA 96845 | ||||||| || | | ||||| |||||| ||||| ||||| ||||||| | Sbjct 182 CGTCCTCGACGTC--CCGCGGAGCCG-TCATCATCAGGTCGGCGAGCTCGTCGATGATCC 238 Query 96846 CCACGATGTAGGGG 96859 ||| |||||| ||| Sbjct 239 CCAGGATGTACGGG 252 Score = 143 bits (158), Expect = 2e-29 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 96962 GGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTACGGGGTGAGTTCCACC 97021 |||| ||||| | ||| || ||||| ||||| || | |||||| ||||| || ||| Sbjct 415 GGCTGGGTGATGATCGGGGTCAGCAGGTGCGGGATGCCCTCGTACGGCGTGAGCTCGACC 474 Query 97022 ATCTTCGGGTCGATCATGATGAGTTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAA 97081 ||||| |||||||||| | | |||| | || ||| || | |||| || Sbjct 475 ATCTTGGGGTCGATCAGCACCATCCGGACCTCGGCCGGCGAGGCCCGCTGCAGCAGCGAG 534 Query 97082 ACCAGCATCGAGTTGATGAAGCTGGACTTACCTGATCCGGTGGCGCCAGCCACCAGCAGG 97141 |||||||||||||| | |||||||||||| || || ||||||||||| |||||||||||| Sbjct 535 ACCAGCATCGAGTTCACGAAGCTGGACTTGCCGGAACCGGTGGCGCCGGCCACCAGCAGG 594 Query 97142 TGCGGCATTTTGGCCAGGTTCA 97163 ||||| | ||||||||||||| Sbjct 595 TGCGGGGTCTTGGCCAGGTTCA 616 >seq216206 Length=797 Score = 104 bits (114), Expect = 2e-17 Identities = 362/553 (65%), Gaps = 29/553 (5%) Strand=Plus/Plus Query 98826 GTCGAGCTTGGGGAAATCAGGCTCGCGGATCTCATCTGGCCACCGCAGCGTCTGCAACGT 98885 ||||||| ||||| || | |||||| | ||| || ||| |||||||||||| | Sbjct 4 GTCGAGCCCCGGGAACTCGGCCTCGCGCACCTCGTCGTCCCAGAGCAGCGTCTGCAGCAG 63 Query 98886 CAGAACCTCATTCTTGCCCGTCACACGCAACACCGCCAG--GTGTTCCTTGCTCCGCAGG 98943 ||| ||||| | | ||| || |||| | ||||||| | || | |||| ||||| Sbjct 64 CAGCACCTCGT-CGTGC-----ACTCGCAGCGCCGCCAGCCGGGTGCGTTGC--CGCAGC 115 Query 98944 GTTACCCGTACGATGGCGACCTTGC---CGGCGTCAGAGAGCGTCCTAGCCAGCAGAGCG 99000 | | || ||||| || | ||| ||| || ||||| | |||||| ||| Sbjct 116 GAGATGCGCACGATCGC---CGTGCGCTCGGTCTCCTCCAGCGTGCGGCGCAGCAGCGCG 172 Query 99001 TAGGGCCGCACCGAGCCCTC-TACGTT--CAGGTAGTAGGGCTTGTCGAGCATGATCGGG 99057 || | | || ||||| | || ||||||||| |||||| ||||| Sbjct 173 TACGCCTTCATCGAGCTGGAATCCGGCGCCAGGTAGTAACTGCGGTCGAGGCGGATCGCA 232 Query 99058 TCGACCTCCCCGGCCGGCACGAACTCTACGACGTCAATCACCTTGTTGGTTTCGCTGGGC 99117 || |||| | | | ||||||||||| |||||||| || | | || ||| ||| Sbjct 233 TCCACCTGCTCCGAGGGCACGAACTCGACGACGTCGATGTCGCGGCTGCGCTCGGCCGGC 292 Query 99118 AGCTCTGCCAAGTCCTCATTGGTCAGTAGGGCGGTTTGCCCGTCGACCTCGAACACCTTG 99177 ||| |||| || || ||| | || | | | || | || || | ||| | ||||| Sbjct 293 AGCGACGCCAGATCGTCCTTGCTGAGCACGACCGTGCGGTCGCCGTCGTCGTAGGCCTTG 352 Query 99178 CCCAGATCGGC-CGTGTGG-ACCTGCTCACCGCAGCATTCACAGATCTTG---TGATACT 99232 | ||| || || || || ||| |||||| || || |||| || || Sbjct 353 TC--GATGTGCTCGAAGGGCACGACCTCGCCGCAGATCTCGCA---CTTGCGCTGGTAGC 407 Query 99233 TGATCCGCCCGCCGTCCTGGACGTGCGCCAGATGGCCCTTCAGGTCGTGCTCTTCGGTGG 99292 ||| ||||||| ||| | | ||||| || |||| | || |||||| ||||| |||| Sbjct 408 GGATGCGCCCGCTGTCGTCGTCGTGCACCTGATGCAGCGGCACGTCGTGGTCTTCCGTGG 467 Query 99293 CCGCGTACATCTTCACCGGCACGTTGACCAACCCGAAGTTGACCGCGCCTGTCCACACCG 99352 ||| | | | ||| || ||||||||||||| ||||||| | | || ||| |||| | || Sbjct 468 CCGAGAAGAGCTTGACGGGCACGTTGACCAGCCCGAAGCTCAGCGAGCCCTTCCAGATCG 527 Query 99353 CTCTCATGCCTGC 99365 | ||||| ||||| Sbjct 528 CCCTCATTCCTGC 540 >seq50100 Length=1361 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 51135 TCACCCCGCACGACCTCCGGCACACCTGCGCCTCGCTGGCCATCTCCTCCGGCGCCAACG 51194 |||| ||||||||||| ||||||||| |||||||| || ||||| | ||||| |||| Sbjct 266 TCACTCCGCACGACCTGCGGCACACCGCTGCCTCGCTCGCTATCTCGGCGGGCGCGAACG 207 Query 51195 TCAAGGCGGTCCAGAACCTTCTGGGACAC 51223 ||||||| ||||||| | | || |||||| Sbjct 206 TCAAGGCCGTCCAGACCATGCTCGGACAC 178 >seq145472 Length=1506 Score = 82.4 bits (90), Expect = 5e-11 Identities = 249/375 (66%), Gaps = 21/375 (6%) Strand=Plus/Minus Query 98715 CAGTTCCACCTTGTAGGTGTCCTGGTACTTGTCAGGGTTGAACGGCGC-GGACAGCTCAT 98773 ||| || | || ||||||||||| ||||| |||| ||| | ||| || || | | Sbjct 1319 CAGCTCGAGCTGGTAGGTGTCCTCGTACTCCGACGGGTCGAA-GTCGCCGGCCATCGTCT 1261 Query 98774 CAACGAGCATCGCCGCCACCTTCAGCTCAGCCTCGGACAGTTC--CGGCTTGTTGTCGAG 98831 | | ||| |||||||| || || || | ||| | | || ||| | || |||||| Sbjct 1260 CGATCAGCGACGCCGCCATCTCGAGTTC--CTGCGGCCGGATCGTCGGTTCGTCGTCGAG 1203 Query 98832 CTTGGGGAAATCAGGCTCGCGGATCTCATCTGGCCACCGCAGCGTCTGCAACGTCAGAAC 98891 |||||| || | || |||| ||| || |||||| |||| ||||||| || || || Sbjct 1202 TGCGGGGAACTCGGCCTGCCGGACCTCGTCGGGCCACAGCAGTGTCTGCAGCGACATCAC 1143 Query 98892 CTCATTCTTGCCCGTCACACGCAACACCGCCAGGTGTTCCTTGCTCCGCAGGGTTACCCG 98951 | ||||| ||| |||| | ||||| || | | | ||||| || | | Sbjct 1142 GT------TGCCCACCACCCGCAGTGCGGCCAGACGTGTCCGGTTGCGCAGCGTGAACGT 1089 Query 98952 TACGATGGCGACCTTGCCGGCGTCAGAGAGCGTCCTAGC-CAGCAGAGCGTAGGGCCGCA 99010 |||| || | | | ||| ||| | ||||| ||| | |||||| |||||| | | Sbjct 1088 GGCGATCGCCAGCCGGTCGGTGTCGGCGAGCG-CCTGCCGCAGCAGCACGTAGGCCTTCG 1030 Query 99011 CCGAGCCCTCTACGT----TC-AGGTAGTAGGGCTTGTCGAGCATGATCGGGTCGACCTC 99065 || | || ||| || ||||||||||||||||||| |||||||||||||| Sbjct 1029 GTGA--CTTCGACGCCGGCTCGAGGTAGTAGGGCTTGTCGAAGTAGATCGGGTCGACCTG 972 Query 99066 CCCGGCCGGCACGAA 99080 | | ||||||||| Sbjct 971 GTCCGACGGCACGAA 957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350049096620643