Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028878.1 Length=76271 Score E Sequences producing significant alignments: (Bits) Value seq219192 104 1e-17 >seq219192 Length=699 Score = 104 bits (114), Expect = 1e-17 Identities = 228/338 (67%), Gaps = 13/338 (4%) Strand=Plus/Plus Query 50707 CGCGGCGGCGTCGGGCGCGGCTCACCTGTTGAGCTTCACCGGTACGGACTCGCTGGTGTC 50766 ||| ||||| ||||| | |||||| | ||| ||| || |||||| || ||| Sbjct 16 CGCAGCGGCCGGTGGCGCCGGACACCTGCTCTCGTTCCTCGGCACCGACTCGATGCCGTC 75 Query 50767 GCTGGATTGGATCGACCGCTACTACGGCGGCGACTACG------TGGCGGGGTCGGTTCC 50820 ||| || | ||||||| |||||| |||||| ||| |||||| | || || Sbjct 76 GCTCGACTTCGTCGACCGGTACTACCCGGGCGACGACGGACTCGTGGCGGCGAGCGTCCC 135 Query 50821 GGCTACCGAGCACTCGGTGATGTGTACCGGCATTGAGACGGTCGGGGAGCTTGAGACGTT 50880 ||| ||||||||| |||||||| | || | | | | ||||||||| |||||||| Sbjct 136 GGCGACCGAGCACAGCGTGATGTGCGTCCGC---GGGGCCGACGGGGAGCTCGAGACGTT 192 Query 50881 CAAGCGGCTGCTGGACCTGTACCCGTCCGGAATCGTCAGCGTCGTGTC--CGACACTTTC 50938 | ||| | | || ||| | |||||| | || ||||| || || ||| |||| ||| Sbjct 193 CGAGCAGATCCTCGACGTCTACCCGACGGGCATCGTGT-CGGCG-GTCAGCGACGGCTTC 250 Query 50939 GATCTGTGGAAGGTGCTGACCACGTACCTGCCGACGCTGCATAAGCAGATCGTGGGCCGG 50998 || |||| ||||| | ||| | || ||| ||| | | | |||| || || Sbjct 251 GACCTGTTCAAGGTCATCACCGAGACGCTCCCGCAGCTCAAGGACCGGATCACCGGGCGC 310 Query 50999 GACGGCAAGCTGGTCATTCGGCCTGACTCCGGCGATCC 51036 ||||||||||| || || || || ||||| || || || Sbjct 311 GACGGCAAGCTCGTGATCCGCCCGGACTCGGGTGACCC 348 Score = 82.4 bits (90), Expect = 4e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 51170 GGTGTGATCTACGGCGACTCGATCACGCTTGAGCGCGCCGAGCGCATCACCGCGCGTATG 51229 || ||||||||||||||| ||||| || || ||||| |||||| || ||| | Sbjct 462 GGCGTGATCTACGGCGACAGCATCACCCTCGACCGCGCTCGTCGCATCTACGAGCGCCTC 521 Query 51230 GAGCGGCTGGGTTATGCGTCGTCCAACGTGGTGTTTGGGGTCGGGTCGTTCACGTACCAG 51289 ||| ||| || || |||| | ||| | || |||| |||| ||| |||||| Sbjct 522 GAGGCCAAGGGCTACTCGAGCGACAACATCGTGCTCGGCATCGGCTCGTACACCTACCAG 581 Query 51290 TACAACACCCGCGACACGTTCGGGTCCGCGATGAAAGCGACGTGGGCTGAGGTCGACGGC 51349 |||| |||||||||| |||| ||| |||| ||||||||||| ||| |||||| Sbjct 582 TACATGACCCGCGACAACCTCGGCAGCGCCGTGAAGGCGACGTGGGCGCTGGTGGACGGC 641 Query 51350 AAG 51352 || Sbjct 642 GAG 644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243118618941016