Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028904.1 Length=49452 Score E Sequences producing significant alignments: (Bits) Value seq42003 273 7e-69 seq4597 100 9e-17 seq6603 89.7 2e-13 >seq42003 Length=910 Score = 273 bits (302), Expect = 7e-69 Identities = 383/526 (73%), Gaps = 25/526 (5%) Strand=Plus/Plus Query 39236 CCTCCATCTCGTCGGCCACCATCTCGATCTCCCGGAGAGGGAAGCTCGGAACCTTCGCGT 39295 ||||||||| ||||| ||||||||||||| || | ||||| || | | || || Sbjct 190 CCTCCATCTGCTCGGCGGCCATCTCGATCTCGCGCTGCGGGAAAGAGGGGAAGTGCGAGT 249 Query 39296 TCTCGCGCTGGGTCCGGAGGCTGAGGAAGCTCATCAGGGAGCGTGCGTTGCACG-TCGCG 39354 |||| ||| || || || ||||||| |||| || ||||| ||||| |||| || || Sbjct 250 CCTCGTGCTTCGTGCGCAGCGAGAGGAAGTTCATGAGCGAGCGCGCGTT-CACGGTCACG 308 Query 39355 TAGAAGGAGGTGTAGATGCCGACCGGCAGGACGTTGCGCGCTACCTCGCGGGCGACGCCC 39414 || | |||| |||||| |||||||| ||| ||| || ||||||||||| || || Sbjct 309 TACATCGAGGAGTAGATCGACACCGGCAGCACGGCGCGGGCGACCTCGCGGGCCACACCG 368 Query 39415 GCACCGAGCT------GGT---TCTGGTACGCCTGCCAGGCGGCGCGGTAGGCGTCCTTC 39465 || ||||| ||| || ||| |||| | ||| ||||| ||| || || Sbjct 369 GCGTCGAGCATGCGCAGGTAGCTCGCGTAGGCCTCGCTCGCGACGCGGC-GGC-TC--TC 424 Query 39466 GAGGAGGCCGTGACGCTCATGTACTGGCCGAGGGTGCCCGGCTCGAAGCGGTAGGCACCG 39525 | || | || | || || ||| || |||||||| |||||| |||||| ||| Sbjct 425 GGCGACGACGAGT---TCGTG--CTGCTCGGGGGTGCCCTCTTCGAAGACGTAGGCGCCG 479 Query 39526 GGCTTGCCGACCTGGACGAGGTTGCGGTCCGAGGCAGGCACGTAGAAGACCGGGTCG-AG 39584 |||||||||||||| ||||| ||| || | | | |||||||||||||| ||| || || Sbjct 480 GGCTTGCCGACCTGCACGAGACGGCGCTCGGGGCCGGGCACGTAGAAGAC-GGGACGCAG 538 Query 39585 CTCCTTGTACCGGCCCGACTCCTCGTTGTAGCTGAAGCCGATGCGGTGGCGGAAGAACTC 39644 || ||| || || ||||||||||||| || |||||||||| || | |||||| Sbjct 539 CTGACGGTAGCGCCCGCTCTCCTCGTTGTAGG---AGGCGATGCGGTGCCGCATGAACTC 595 Query 39645 GCGGGCCACGAAGATCGGGGCCTCGATGTAGAAGACGAAGTGGTTGTGCTCGAACGGGGA 39704 |||| ||||||||||| |||| | ||||||| || |||||||||||| || || Sbjct 596 GCGGAAGACGAAGATCGGCGCCTGCACGTAGAAGGTGAGCGAGTTGTGCTCGAAGGGCGA 655 Query 39705 GCCGTGCCTGTCGCGCATGAGGTAGTTGATGAGCCCCTTGTCGCGG 39750 |||||| | ||||||||| |||||||||||||| |||||||||||| Sbjct 656 GCCGTGGCGGTCGCGCATCAGGTAGTTGATGAGGCCCTTGTCGCGG 701 >seq4597 Length=157418 Score = 100 bits (110), Expect = 9e-17 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34941 TCGACGCGATGGAGATCGACCACGCCATCGCCGAGTGCGTGGTGTCCGGTGGCGTCCGAC 35000 |||| || ||| |||||||||||| |||||| | | ||| || | ||||| | || | Sbjct 124593 TCGAGGCCATGCAGATCGACCACGACATCGCGGCATCCGTCGTCGCAGGTGGTGCACGTC 124534 Query 35001 GTTCGGCCCGCATGGCGATCTGCGCCTGGAACGACCCGTTCATCTTCCCCTTCCTCGACT 35060 | || || || ||||| || | |||| |||||||| ||||| |||| || ||| Sbjct 124533 GGTCCGCGCGTATGGCAATGATGGTCTGGGACGACCCGGAAGTCTTCGACTTCATCAACT 124474 Query 35061 CGAAGAAGGACGGCTCGAAGCACTGGACGACGAACATCTCGGTCGAGATTGACGACGACT 35120 ||| ||| | || | |||||||| ||||||||||| |||||| | |||||| | Sbjct 124473 GCAAGGCCGACTGGTCCACTCACTGGACCACGAACATCTCCGTCGAGGTAGACGACCGGT 124414 Query 35121 TCACCGAG 35128 ||||| || Sbjct 124413 TCACCAAG 124406 >seq6603 Length=23608 Score = 89.7 bits (98), Expect = 2e-13 Identities = 148/209 (71%), Gaps = 11/209 (5%) Strand=Plus/Plus Query 39926 GAAGGCGAGGGCCTTGCTCGGCGTGCCGTAGCGCGCCTCGATGTAGCGGAGACCGGCGAC 39985 |||||| ||||||| |||| ||||||||||| || |||||| || ||| | Sbjct 4829 GAAGGCCCAGGCCTTGTTCGGGTTGCCGTAGCGCTGCTGGATGTACTTCAGCCCGTACTC 4888 Query 39986 GATCTGCC-GCTCAGGGTCGGAGGTCTTCGCGATGCCGTAGCCAGCCCATGTGGAGTCCA 40044 |||| | || |||||||||||||| | | |||||||| ||| |||||||||| Sbjct 4889 AGCCTGCTTGGTC-GGGTCGGAGGTCTTGGGG---CCGTAGCCCTTCCAGGTGGAGTCCA 4944 Query 40045 GGAACTGGGCGATCCCGTAGGCGGTGCTCGTCGGGTTCTGTGCGTCGGGGTTCC---AGT 40101 |||||||| || ||||||||| | ||||||||||| | ||| ||| | || Sbjct 4945 GGAACTGGAACATGCCGTAGGCGCTCGAGGTCGGGTTCTGCG---CGGTGTTGCGGAAGC 5001 Query 40102 CGGACTCGTTGGTCCACAGCTCCTCCAGG 40130 |||||||| | || ||||| | |||| Sbjct 5002 CGGACTCGCTCATCACCAGCTTGTACAGG 5030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157604512384244