Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028936.1 Length=59052 Score E Sequences producing significant alignments: (Bits) Value seq84152 468 2e-127 seq134864 163 1e-35 seq74518 154 6e-33 seq231474 131 6e-26 seq20617 120 1e-22 >seq84152 Length=5826 Score = 468 bits (518), Expect = 2e-127 Identities = 595/802 (74%), Gaps = 35/802 (4%) Strand=Plus/Plus Query 53046 CGGTGTCGACCTGTCGCACTCGCCGAAGTGGCGTGAGCAGCTCGGCACGCTCGGCGGTGG 53105 |||||||||||| ||||||| ||||||||||||||||||||| |||||||||| || Sbjct 4694 CGGTGTCGACCTCGGGCACTCGAAGAAGTGGCGTGAGCAGCTCGGGTCGCTCGGCGGCGG 4753 Query 53106 CAATCACTTCATCGAGTTGTGTGTCGACCACCTTGACCGTGTGTGGTTGTTCCTGCACTC 53165 ||| |||||||||||| |||| ||||| | || || |||||| ||||||||||||| Sbjct 4754 CAACCACTTCATCGAGCTGTGCCTCGACGAGTCCGATCGGGTGTGGATGTTCCTGCACTC 4813 Query 53166 CGGTTCGCGTGGTGTAGGCAACAAGATCGCGCAGCGGCATATCGCTGCGGCGCAGG-GCT 53224 ||||||||| ||||| |||||| |||||||||||| || ||||| |||||| ||| Sbjct 4814 CGGTTCGCGGGGTGTCGGCAACCGGATCGCGCAGCGACACATCGCGATCGCGCAGAAGCT 4873 Query 53225 ACTGCCACAACAACGGCC--TGCAGGTGCCTCACCCTGATCTGGCGTATCT--CGTC-GA 53279 |||| | | ||| | | | || |||| || || ||||| || |||| || Sbjct 4874 G--GCCAGGA-AGTGGCACATCGTGCTCCCGAACCCGGACCTCGCGTACCTGCCGTCCGA 4930 Query 53280 GGGCACGCCCGAGTTCGACTCGTACATCGTCGAGTTGCGGTGGGCGCAGCGGTTCGCGTA 53339 | ||||| ||| |||| |||| || || || |||||| |||||||||||| Sbjct 4931 G---ACGCCGGAGCTCGAGGTGTACCTCCGGGATCTGGCGTGGGCACAGCGGTTCGCGCT 4987 Query 53340 CCTGAACCGTGCCGAGATGCTGGATCGTTTCGCGCGGGCGTTCGCGCACTGGATGGGTTA 53399 | |||||| || |||||| ||||||| ||| || |||||||||||||||| | ||| | Sbjct 4988 CGAGAACCGCGCTGAGATGATGGATCGCTTCCGGCAGGCGTTCGCGCACTGGGTAGGTCA 5047 Query 53400 CCCGCCGGGTGAC---GCCGATTCGCTGCTGGTGGAGACGATCAACACTCATCACAACTA 53456 | | ||| |||| ||||| ||| | ||| ||||||||| || |||||||| Sbjct 5048 C--GACGG-TGACCCGGCCGA---GCTCGAGACCGAGCGGATCAACACCCACCACAACTA 5101 Query 53457 CACG--CAGAAGGAAACTCACGGCGGCCGTGAGGTGTGGTTGACCCGCAAGGGTGCGATC 53514 ||| | || | || |||||||| || |||||| |||||||||||||||||||| Sbjct 5102 CACCGTCCGAGAGCGAC--ACGGCGGCAAGGACGTGTGGCTGACCCGCAAGGGTGCGATC 5159 Query 53515 GACGCGAACAAGGGGGTGCGGGGGCTGATTCCCGGCAGCATGGGCACCCGCTCGTATGTC 53574 |||||| || |||| |||||||| | || || ||| ||||| || || || || || Sbjct 5160 GACGCGCACGAGGGTGTGCGGGGCATCATCCCGGGCTCGATGGGGACGCGGTCCTACATC 5219 Query 53575 GTCACCGGCAAGGGCAATCCCGAGGCG--TTGTGCTCGGCGCCGCACGGTGCGGGCCGCC 53632 || ||||||||||| | | | |||| |||| |||||||||||||| ||||| || | Sbjct 5220 GTGACCGGCAAGGG--ACACGGCGGCGGTCTGTGTTCGGCGCCGCACGGCGCGGGGCGTC 5277 Query 53633 GGTTCTCCCGCAACAAGGCCCGCAAG---ATGTTCACCGTCGAGGATCTGGACGCCCGCA 53689 ||||||| || | |||| |||| || ||||| | ||||| || ||| | Sbjct 5278 GGTTCTCACGGGCCGAGGC---CAAGCGTCGGTACACCGAGGCCGATCTCGAGGCCGCGA 5334 Query 53690 TGGCTGGCATTGAGTATCGGCGCGGCGAGGCGTGGGTCGACGAGATTCCCGACGCCTACA 53749 || | || || ||||| |||| ||| | || |||| |||||||||| || | || |||| Sbjct 5335 TGACCGGGATCGAGTACCGGCACGGGGCGGAGTGGATCGACGAGATCCCGCAGGCGTACA 5394 Query 53750 AGCCGATTGACGTCGTGATGGCCGACGCGGAGAGCCTCGTATCGGTTGACGTCGAGCTGC 53809 || || |||||||||||||||||||| ||| ||||||| ||| | ||| | |||| Sbjct 5395 AGAGCATCGACGTCGTGATGGCCGACGCCGAGCGCCTCGTGTCGATCGACCACACCCTGC 5454 Query 53810 GCCAGGTGCTCAACGTGAAGGG 53831 | |||||||||||||||||||| Sbjct 5455 GTCAGGTGCTCAACGTGAAGGG 5476 Score = 114 bits (126), Expect = 5e-21 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 52673 TGATCAACTTCGCCAGCGAGGTTGACGACGAGACTCTCGCCCAGGCGCAGCAGACGGCTG 52732 || ||||||||||| |||| | ||||| |||| ||| |||||| || |||| || | Sbjct 4380 TGCTCAACTTCGCCTCCGAGATCGACGAGAAGACGATCGACCAGGCCAAGGAGACCGCAG 4439 Query 52733 ACATGCCGTTCGTGTACCCGCACGTGGCGCTCATGCCTGACGCGCATTTCGGGAAGGGCA 52792 |||| |||||| |||||||||||||| | ||||| || ||||| | ||| ||||| | Sbjct 4440 CGCTGCCCTTCGTGCACCCGCACGTGGCGTTGATGCCGGATGCGCACTACGGCAAGGG-A 4498 Query 52793 GCAGC-GTCGGCACGGTGATCCCGACCGAGGGTGNNNNNNNNNNNNNNNCGGTGGGTGTG 52851 | || ||||| || || |||||||| | | | |||| || || Sbjct 4499 TCCGCGGTCGGTACCGTCATCCCGACGGTCGACGCCGTCATCCCGGCCGCGGTCGGGGTC 4558 Query 52852 GACATTGGTTGCGGCATGATCGCCGCCCGCAC 52883 ||||| || |||||||||||||||| ||| || Sbjct 4559 GACATCGGGTGCGGCATGATCGCCGTCCGGAC 4590 >seq134864 Length=649 Score = 163 bits (180), Expect = 1e-35 Identities = 423/639 (66%), Gaps = 33/639 (5%) Strand=Plus/Minus Query 53149 TGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTAGGCAACAAGATCGCGCAGCGGCATATC 53208 |||||||||||||||||||| || || ||||| |||||| |||||| |||| || ||| Sbjct 615 TGGTTGTTCCTGCACTCCGGGTCCCGCGGTGTCGGCAACCGGATCGCCCAGCACCACATC 556 Query 53209 GCTGCGGCGCAG--GGCTACTGCCACAACAACGGCCTGCAGGTGCCTCACCCTGATCTGG 53266 | | || | | | | | | ||||||| | || || | | | ||||| | Sbjct 555 GGGGTTGCCCGGAAGTCGATGGTGG--ACAACGGGATCGAGCTGGCAGATCGCGATCTCG 498 Query 53267 CGTATCTCGTCGAGGGCACGCCCGAGTTCGACTCGTACATCGTCGAGTTGCGGTGGGCGC 53326 |||| || || |||||||| ||||||||| | ||| | | |||| | ||||| | Sbjct 497 CGTACCTGGTGGAGGGCACCGAGGAGTTCGACGCCTACCTGGCCGAGCTCACCTGGGCAC 438 Query 53327 AGCGGTTCGCGTACCTGAACCGTGCCGAGATGCTGGATCGTTTCGCGCGGGCGTTCGCGC 53386 ||| |||||| || ||||| | ||||||| |||| ||| ||| |||| | | | Sbjct 437 AGCAGTTCGCCGCACTCAACCGCGACGAGATGATGGAGCGTGTCGTGCGGTCACTGCAGT 378 Query 53387 ACTGGATGGGTTACCCGCCG-GGTGACGCCGATTCGCTGCTGGTGGAGACGATCAACACT 53445 |||||| || ||| | |||| || | || ||| || | Sbjct 377 TCTGGATCGG-----CGCGGAGGTG-----GA------GGTGTCCGAGGACCTCGGCTGC 334 Query 53446 CATCACAACTACACGCAGAAGGAAACTCACGGCGGCCGTGAGGTG---TGGTTGACCCGC 53502 || |||||||||||| || || ||| ||| |||| || ||| || ||||| Sbjct 333 CACCACAACTACACGGCCCGCGAGACGCACCACGG---TGAGCTGCTGTGGGTGTCCCGC 277 Query 53503 AAGGGTGCGATCGACGCGAACAAGGGGGTGCGGGGGCTGATTCCCGGCAGCATGGGCACC 53562 |||||||| ||| |||| | || || | |||||||| || || ||||| || Sbjct 276 AAGGGTGCCATCAACGCCGAGGTCGGCGTCCCCGGGCTGATCCCGGGGTCGATGGGTACG 217 Query 53563 CGCTCGTATGTCGTCACCGGCAAGGGCAATCCCGAGGCGT---TGTGCTCGGCGCCGCAC 53619 ||||| ||||| |||||| ||| || |||| || ||||| || |||||| Sbjct 216 GCGTCGTACGTCGTGTCCGGCAGGGGGAA---CGAGCAGTCCCTGTGCAGTGCACCGCAC 160 Query 53620 GGTGCGGGCCGCCGGTTCTCCCGCAACAAGGCCCGCAAGATGTTCACCGTCGAGGATCTG 53679 || || ||||| | ||| || | ||||| ||||||| ||||| ||||| || ||| Sbjct 159 GGAGCAGGCCGGGCCTACTCGCGGACGAAGGCGCGCAAGACCTTCACGGTCGACGACCTG 100 Query 53680 GACGCCCGCATGGCTGGCATTGAGTATCGGCGCGGCGAGGCGTGGGTCGACGAGATTCCC 53739 || |||| || || ||||| || | ||||||| ||||||||||| ||| Sbjct 99 CGGGCGGCGATGGTCGGGATCGAGTACCGCGACACGGAGGCGTTCGTCGACGAGATCCCC 40 Query 53740 GACGCCTACAAGCCGATTGACGTCGTGATGGCCGACGCG 53778 | |||||||||| || ||| ||||||||||| ||| Sbjct 39 GGCGCCTACAAGGACATCGACCAGGTGATGGCCGATGCG 1 >seq74518 Length=2537 Score = 154 bits (170), Expect = 6e-33 Identities = 375/547 (69%), Gaps = 27/547 (5%) Strand=Plus/Minus Query 24938 CTGTGCATCCGATCGAACGACGGCACGTACCGAGACAAGAACTGGGCCACCAACTACGCC 24997 |||| ||||| |||||||||||||| | ||| ||| | ||| || |||||||| Sbjct 1305 CTGTCGATCCGTTCGAACGACGGCACATTCCGCGACCCGCACTTCGCACAGAACTACGCG 1246 Query 24998 TGGTGCAAGCGCGCAG--TCGACGACGGCCGGCTCAAGTTCTTCATCGTCTACTTCGTGT 25055 ||| | || ||||| ||||| ||| || ||| || |||||||||| | Sbjct 1245 TGGATCC-GC-CGCAGCCTCGACCGCGGGCGCCTCCGTGTCGGGATCGTCTACTGCTACC 1188 Query 25056 GGCGTCCGAACTGGC---AGGCCGCGGTTGACACGCT---CATG-TCGCAAGTG-GGGCA 25107 ||| |||||||||| || ||||| || || |||| ||| ||| |||| Sbjct 1187 TGCGCCCGAACTGGCTCGAGACCGCGAACACCATGCGGGACATGATCGATCGTGCGGGCG 1128 Query 25108 -ACCACATCCGCGCATGGCCGTGATGATCGACGTCGAGAGCTGGGGCGGTCAGATCGGCG 25166 || ||||| | ||| ||||| |||||||||| | ||||| | ||||| Sbjct 1127 GACTGCATCCAAGGGTGGTGCTGATGCTCGACGTCGAATCC---GGCGGGAACCCCGGCG 1071 Query 25167 GCGACCAGTCGAACGGAATCAACGCCGCGTACGAGCGGATCGCCGGATGGCTCGGCG--A 25224 |||| |||| || | |||||| | | ||| | ||| || || ||| | | Sbjct 1070 GCGATGCGTCGGACTGGATCAACCGCACCTACTGGAACCTCGTCGAATACGCCGGTGGCA 1011 Query 25225 TCGC-CGCCGCGTGATCGGCTACGGCAACGTCGGCGACCTCGACCGGCTCTGGCCGCGCA 25283 ||| || || ||||||||||||| |||| | |||| ||| | || | |||| | | Sbjct 1010 ACGCTCGGCGGGTGATCGGCTACGCGAACGCGGCCGACTTCGCCGGGATGTGGC-GTGTT 952 Query 25284 AGCCCGA-GGGTGTGCGCCTGGTCGTCGCCGGATACGGGCGGCTGCC-AACGTATCCCGG 25341 ||||| ||| |||| || ||| |||||| ||||| || || ||| | || || Sbjct 951 CGCCCGGCGGGCCTGCGAATGATCGGCGCCGGTTACGGCCGCAATCCGAACCTGGCC-GG 893 Query 25342 CCTGATCGCCCACCAGTACACCGATGGGCAGGGCTACGGCGGCGGGCTGCCCGAGGGCGC 25401 | |||||| |||||||||||||| || | ||| | ||||||||| || ||||| || || Sbjct 892 ACAGATCGCGCACCAGTACACCGACGGCCGGGGTTTCGGCGGCGGACTCCCCGAAGGGGC 833 Query 25402 CCCACCTTTCGGCAACTGCGACATGAACGCAGCCAACGGGCTGACCG-CGA-CAGCGTTC 25459 || || ||||||||||||||||||||| | ||| |||| || || | ||| || |||| Sbjct 832 ACCGCCGTTCGGCAACTGCGACATGAACTCCGCCGACGGCCTCACGGCCGATCA--GTTC 775 Query 25460 GCGGCGG 25466 ||| ||| Sbjct 774 GCGACGG 768 >seq231474 Length=516 Score = 131 bits (144), Expect = 6e-26 Identities = 329/493 (67%), Gaps = 19/493 (4%) Strand=Plus/Plus Query 53140 GACCGTGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGTGTAGGCAACAAGATCGCGCAG 53199 ||||| || ||| |||||||||||||||| || || || || |||||||||||||| ||| Sbjct 7 GACCGCGTCTGGCTGTTCCTGCACTCCGGCTCCCGCGGCGTCGGCAACAAGATCGCCCAG 66 Query 53200 CGGCATATCGCTGCGGCGCAGGGCTACTGCCACAACAACGGCCTGCAGGTGCCTCACCCT 53259 | || ||| | ||| | | |||| | | | | |||| |||| Sbjct 67 CACCACATCAAGGTCGCGAGCGACCTGTGCCGACGCTGGTGGATCGACCTGCCCGACCCC 126 Query 53260 GATCTGGCGTATCTCGTCGAGGGC-ACGCCCGAGTTCGACTCGTACATCGTCGAGTTGCG 53318 || || || || || || ||||| ||| | |||| | |||||| |||| |||| Sbjct 127 GACCTCGCCTACCTGGTGGAGGGGGACGACAC-GTTCTGGGCCTACATCCGCGAGATGCG 185 Query 53319 GTGGGCGCAGCGGTTCGCGTACCTGAACCGTGCCGAGATGCTGGATCGTTTCGCGCGGGC 53378 |||||| |||| ||||| || ||||| | |||||| || | || || | || Sbjct 186 GTGGGCCCAGCACTTCGCCCTGCTCAACCGCGAGGAGATGATGCACCGCGTCCAGGAGGT 245 Query 53379 GTTCGCGCACTGGATGGGTTACCCGCCGGGTGACGCCGATTCGCTGCTGGTGGAGACGAT 53438 ||||| || | |||| ||| ||| || || | || |||||||| Sbjct 246 CGTCGCGGACGAGCTGGG-----CGC-----GAC--CGT---GCAGGCGGACGAGACGAT 290 Query 53439 CAACACTCATCACAACTACACGCAGAAGGAAACTCACG-GCGGCCGTGAGGTGTGGTTGA 53497 |||| || ||||||||||| || | | | | | ||| || ||||||||| || Sbjct 291 CAACTGCCACCACAACTACACCGAG-CGCGAGCGCGTGTTCGGTCGCGAGGTGTGGGTGT 349 Query 53498 CCCGCAAGGGTGCGATCGACGCGAACAAGGGGGTGCGGGGGCTGATTCCCGGCAGCATGG 53557 |||||||||| |||||| ||| |||||| | || |||||||| |||||| |||| Sbjct 350 CCCGCAAGGGCGCGATCCGTGCGGGCAAGGGTGATCGCGGGCTGATCCCCGGCTCGATGG 409 Query 53558 GCACCCGCTCGTATGTCGTCACCGGCAAGGGCAATCCCGAGGCGTTGTGCTCGGCGCCGC 53617 |||| ||||| |||||||| ||| |||| | || | || || ||||| |||| Sbjct 410 GCACGGCGTCGTACGTCGTCACGGGCCTGGGCTACCCGCCGTCGCTGATGTCGGCCCCGC 469 Query 53618 ACGGTGCGGGCCG 53630 |||| || ||||| Sbjct 470 ACGGGGCCGGCCG 482 >seq20617 Length=36039 Score = 120 bits (132), Expect = 1e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 40176 GATCGAGTGCATCGACATTACGCAGCACATGGGGTTCTGCCTCGGCAACGCCACCAAGTA 40235 ||||||||||||||| || || |||||||| |||||| | |||||||| | ||||| Sbjct 28195 GATCGAGTGCATCGAGATCACCAAGCACATGAACTTCTGCTTGGGCAACGCGATGAAGTA 28136 Query 40236 CATCTGGCGCTGCGACCTCAAGAACGACGCAATCGAGGATCTGCGCAAGGCAATCCAGTA 40295 |||||||||| | |||||| |||| | ||||||||||||||||| | ||||| Sbjct 28135 CATCTGGCGCGCTGGGCTCAAGGGCGACAGTGTGGAGGATCTGCGCAAGGCCAAGCAGTA 28076 Query 40296 CATCGAGTTCGAGATTGAGCG 40316 |||||| |||||||| || || Sbjct 28075 CATCGACTTCGAGATCGACCG 28055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188223432505844