Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028946.1 Length=59652 Score E Sequences producing significant alignments: (Bits) Value seq219746 349 1e-91 >seq219746 Length=1062 Score = 349 bits (386), Expect = 1e-91 Identities = 575/834 (69%), Gaps = 39/834 (5%) Strand=Plus/Plus Query 42374 CCCGGAGTGCACGAATCACTCGGTGGCCAAGGGCCGCAAGCGCGTCGACTCGCAGCCCGA 42433 |||| |||||| |||||||||| ||| ||||| |||||||| |||| || ||||| Sbjct 18 CCCGTCGTGCACCCATCACTCGGTCGCCCAGGGCATCAAGCGCGCCGACAAGCGCCCCGA 77 Query 42434 CCTGTTCGGCGAGGTACTGCCCGACGCGGCGGCCGAGCGGTCCCGCGCCACGATGTGGGA 42493 || ||| ||||| ||||||||| || ||||| || || || || ||||||||||| Sbjct 78 CCCCAACGGGGAGGTGTTGCCCGACGACGCCGCCGAACGCTCGCGGGCGACGATGTGGGA 137 Query 42494 CGTGCCCCGGTTCGCCGAGGCGCACCGCTACCAGGCCGTCATCGTCGAGAACGTCGTAGA 42553 ||| ||||||||||||| |||| |||| | || ||||||| ||||| || || Sbjct 138 CGTCGTCCGGTTCGCCGAGTACCACCAGTACCGATCAATCGTCGTCGAAAACGTTGTCGA 197 Query 42554 CGCGTGGCACTGGCAGCCGTTCCAGGCGTGGCTGATGGCCATGGACTCGCTGGGCTACGA 42613 || || ||||| | |||| | ||||||| || | |||| | ||||||||| | Sbjct 198 CGTGTATTTCTGGCCGTTGTTCGCGCCGTGGCTCGCCGCGACGGACGCCCTGGGCTACAA 257 Query 42614 GCACCACATCGTGTTCCTGAACTCGATGCACGCGCAGGCGTTCGGCCCGGGTGCGCCGCA 42673 ||| | ||||||| || |||||||||||||||||| |||||| | | || || || Sbjct 258 CCACGAGATCGTGTGGCTCAACTCGATGCACGCGCAGCTGTTCGGTCAGCCGGCCCCTCA 317 Query 42674 GTCACGGGACCGCATGTACGTGGTGTTCTGGCGCAAGGGCAACCAGCGTCCCGACGTTGA 42733 ||| ||||| | || || || || Sbjct 318 ATCAAGGGACAGGATCTATGTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------- 370 Query 42734 CCGCCTGACGCGGCCCGAGGCGGTGTGCCCGACGTGCGGGCAGGTCCGCGTGATGCAGTC 42793 || || || ||||||||| |||| || | |||| | || || | Sbjct 371 --------CGTGG------GCTGTGTGCCCGTCGTGTGGCCCTGTCCAGTCGGTGAAGAC 416 Query 42794 GTGGAAGCGGCCGGAGCGGGCCCCGTGGGGCCGCTACCGCGCCCAGTACGTGTACCGGTG 42853 |||||||| |||||||| | ||||||||||||||||||||||||| || | || Sbjct 417 CTGGAAGCGCCCGGAGCGT---CAGTGGGGCCGCTACCGCGCCCAGTACACGTTCTCCTG 473 Query 42854 CCCGT-CGAC-CACGTGCCGCAACCAGGTCTTGGAGCCGCTGTTCCGTCCGGCCGCCGAG 42911 |||| || | || | || || || || |||| || | || || ||||| || Sbjct 474 CCCGAACGGCTCATGCGCGGCCAC-AG----TGGAACCCGACTGGCGACCCGCCGCAGAC 528 Query 42912 ATCATCGACTGGTCACTGCTGGGGCAGCGGATCGGCGACCGGGACAAA---CCCCTGGCC 42968 |||||||||||||| |||| || || ||||| ||||| |||| || |||||| Sbjct 529 ATCATCGACTGGTCGCTGCCCGGCACCCGCATCGGTGACCG---CAAACGCCCGCTGGCC 585 Query 42969 GAGAAGACGATGGCGCGGATCCGGGCCGGCATCGAGCGGTACTGGGCGCCGTTCATCACC 43028 |||||||| ||| | || |||| |||||| ||||| || ||||||| |||||| ||||| Sbjct 586 GAGAAGACCATGACCCGTATCCAGGCCGGGATCGACCGCTACTGGGGACCGTTCCTCACC 645 Query 43029 GAGCACCGCCACGAGTACCGAGTCCGCGGCGTCGATGTGCCGTTGCAGACCGTGGCGGCG 43088 |||||||||||||||||||| ||||||| | || |||| ||||||||||||| || Sbjct 646 GAGCACCGCCACGAGTACCGCGTCCGCGACATCACCCGGCCGATGCAGACCGTGGCCGCC 705 Query 43089 TCGGGGAATCACTTCGGCCTGGCGGTGCCGGTCGAAGGCCGCGACGG-AAAGCAGGCCGT 43147 || || || ||||||||||| || | || ||||| || ||||| || ||||| |||| | Sbjct 706 TCAGGCAACCACTTCGGCCTCGCCATCCCCGTCGAGGGGCGCGAGGGCAAAGC-GGCCCT 764 Query 43148 TCCGGTCGACCAGCCCGCGCGCACGATGACGACTCGCAACGAAACCGGGCTGGC 43201 || || || | ||||| ||||| || ||||| || |||| ||||| Sbjct 765 GCCAATCTCGGCACCGGTACGCACCATGACCACCCGCAATGAGACCGCCCTGGC 818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190137115013444