Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028947.1 Length=62738 Score E Sequences producing significant alignments: (Bits) Value seq171065 131 7e-26 seq74518 113 2e-20 seq20617 95.1 5e-15 seq47396 86.0 3e-12 >seq171065 Length=1298 Score = 131 bits (144), Expect = 7e-26 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 36368 ACGACGTCGTGAACCACCCGGCGCACTACACGTCGCATCCCAGCGGAGTCGAGTGCATCA 36427 ||||| |||||| ||||| ||||||| | ||||||||||||| || ||||||||| Sbjct 15 ACGACTCGGTGAACAACCCGCAGCACTACGTGACGCATCCCAGCGGCGTGGAGTGCATCG 74 Query 36428 CCGTCACTGAGCACATGGGCTTCAACCTCGGCAACGCCGTTAAGTACATCTGGCGCTGCG 36487 |||| ||||||||||||| | |||||||||| | |||||| |||||||| || Sbjct 75 AGATCACCGAGCACATGGGCTACCTGCTCGGCAACGTGATCAAGTACGTCTGGCGCGCCG 134 Query 36488 ACCTGAAGCGCGACGCGATCGAGGATCTGCGCAAGGCACGGTTCTACATCGACCGTGAAA 36547 || | ||| |||| || | ||||| || ||||| ||||||||| | ||||| || | Sbjct 135 ACATCAAGGGCGAGGCACTGGAGGACTTGAAGAAGGCCCGGTTCTACCTGGACCGGGAGA 194 Query 36548 TC 36549 || Sbjct 195 TC 196 >seq74518 Length=2537 Score = 113 bits (124), Expect = 2e-20 Identities = 405/616 (66%), Gaps = 32/616 (5%) Strand=Plus/Minus Query 25732 GACACGTTGTACGCCGACGTGTCTGAGTGGCAGGTGCCTGTCACCGACGCGTACACCGAC 25791 ||||| | | ||||||||| || | | ||||| || ||| |||| ||| | || Sbjct 1371 GACACCCTCTTCGCCGACGTCTCCTACTTCCAGGTACCCGTC---GACG---ACAGCTAC 1318 Query 25792 GCCGGCTATCGGGTGCTGTGCATCCGGTCGAACGACGGCACGCACCGTGATGAGGACTGG 25851 ||| || | | | |||| ||||| |||||||||||||| ||| || | ||| Sbjct 1317 -CCG--TACCCGATCCTGTCGATCCGTTCGAACGACGGCACATTCCGCGACCCGCACTTC 1261 Query 25852 GCGAACAACTTCGCGTGGTGCAAGCGCGCGGTCGACGACGGCCGGCTGGCGT-TCTTCAT 25910 || | |||| ||||||| | ||| ||||| ||| || || ||| || || Sbjct 1260 GCACAGAACTACGCGTGGATCCGCCGCAGCCTCGACCGCGGGCGCCTC-CGTGTCGGGAT 1202 Query 25911 CGTGTACTTCGTGTGGCGGCCGAACTGGC---AGGCCGCGGTCGACACGC------TGAA 25961 ||| |||| | ||| |||||||||| || ||||| | || || ||| Sbjct 1201 CGTCTACTGCTACCTGCGCCCGAACTGGCTCGAGACCGCGAACACCATGCGGGACATGAT 1142 Query 25962 AGCTCAAGTAGGCGAGCCTCATCCGAAGATGGCCGTGATGCTCGACGTCGAATCATGGAA 26021 | || | |||| | ||||| | | ||| ||||||||||||||||||| | Sbjct 1141 CGATCGTGCGGGCGGACTGCATCCAAGGGTGGTGCTGATGCTCGACGTCGAATCCGG--- 1085 Query 26022 CGGGCAGATCAGCGGCGACCAGTCGGCCGGCATCAAC-GCTGCGTTTGAGCAGATCGCCG 26080 |||| | | ||||||| ||||| | | |||||| || | || | | ||| || Sbjct 1084 CGGGAACCCCGGCGGCGATGCGTCGGACTGGATCAACCGCACCTACTG-GAACCTCGTCG 1026 Query 26081 GCTGGTTGGGTGAC--CGC-CGGCGAGTCATCGGATACGGCAACACCGGTGACCTCAACG 26137 | |||| | ||| ||||| || ||||| |||| ||| | | ||| || || Sbjct 1025 AATACGCCGGTGGCAACGCTCGGCGGGTGATCGGCTACGCGAACGCGGCCGACTTCGCCG 966 Query 26138 CGCTGTGGCCGCGGAAGCC-GGAAGGTGTGCGGCTGGTGGTCGCCGGCTACGGGAAGCTG 26196 | |||||| | | ||| || || |||| || | | |||||| ||||| Sbjct 965 GGATGTGGC-GTGTTCGCCCGGCGGGCCTGCGAATGATCGGCGCCGGTTACGGCCGCAAT 907 Query 26197 CCGA-CCTATCCGGGCATGATCGCCCACCAATACACCGATGGGCAGGGCTACGGCGGTGG 26255 |||| ||| |||| || |||||| ||||| |||||||| || | ||| | |||||| || Sbjct 906 CCGAACCTGGCCGGACA-GATCGCGCACCAGTACACCGACGGCCGGGGTTTCGGCGGCGG 848 Query 26256 CTTGCCTGAAGGCGCACCGCCATTCGGCCGGTGCGACATGAACGCTGCGAACGGACTGAC 26315 | || ||||| |||||||| |||||| |||||||||||| | || |||| || || Sbjct 847 ACTCCCCGAAGGGGCACCGCCGTTCGGCAACTGCGACATGAACTCCGCCGACGGCCTCAC 788 Query 26316 CGCGTCTGAGTTCGCG 26331 || | |||||||| Sbjct 787 GGCCGATCAGTTCGCG 772 >seq20617 Length=36039 Score = 95.1 bits (104), Expect = 5e-15 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 36376 GTGAACCA-CCCGGCGCACTACACGTCGCATCCCAGCGGAGTCGAGTGCATCACCGTCAC 36434 ||| |||| ||| || |||||||| |||| |||| || ||||||||||| |||| Sbjct 28233 GTGCACCAGCCCAGC-CACTACACCGCGCACGCCAGTGGGATCGAGTGCATCGAGATCAC 28175 Query 36435 TGAGCACATGGGCTTCAACCTCGGCAACGCCGTTAAGTACATCTGGCGCTGCGACCTGAA 36494 |||||||| |||| | | |||||||| | ||||||||||||||| | || || Sbjct 28174 CAAGCACATGAACTTCTGCTTGGGCAACGCGATGAAGTACATCTGGCGCGCTGGGCTCAA 28115 Query 36495 GCGCGACGCGATCGAGGATCTGCGCAAGGCACGGTTCTACATCGAC 36540 | ||||| | ||||||||||||||||| | ||||||||| Sbjct 28114 GGGCGACAGTGTGGAGGATCTGCGCAAGGCCAAGCAGTACATCGAC 28069 >seq47396 Length=7053 Score = 86.0 bits (94), Expect = 3e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 593 TAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 649 |||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 4060 TAGCTCAACTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTG 4116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199959259746337