Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028953.1 Length=110764 Score E Sequences producing significant alignments: (Bits) Value seq68307 212 4e-50 seq24208 185 6e-42 seq101977 152 4e-32 seq216206 104 2e-17 seq50100 89.7 4e-13 seq145472 82.4 5e-11 >seq68307 Length=2902 Score = 212 bits (234), Expect = 4e-50 Identities = 262/358 (73%), Gaps = 3/358 (1%) Strand=Plus/Plus Query 97168 GACCGCCGCCTCAATCTCTCCGTCGGATACGAAAGCGCCCTGTATCCGGATGGCACCCCG 97227 |||| | ||| ||||| |||||| | ||| |||||||| |||||||||| | Sbjct 1678 GACCACGGCCGAGATCTCCTCGTCGGTGATGAACGCGCCCTGCATCCGGATGGGGCGGTT 1737 Query 97228 CGCCCCCACGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTC 97287 ||| |||| || | ||| | ||||| ||||| || ||||||| ||| || || || Sbjct 1738 CGCGCCCATCGGGATGAAGAGTCCGTCGCCCATGCCGATGAGCTTCTCCGCGCCCGGCTG 1797 Query 97288 GTCCAGGATCACCCGGCTATCGGTGAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCAC 97347 || ||||| || || ||||| || || | || ||||||| ||||| ||||| || Sbjct 1798 ATCGAGGATGACGCGCGAGTCGGTCAGCGACGACGTCGCGAACGCGAGCCGCGACGGGAC 1857 Query 97348 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 97407 ||||| ||||| ||||| ||||| || || || || || ||||| ||||| || || || Sbjct 1858 GTTGGTCTTGATCAGGCCGGTGACGACGTCGACCGACGGTCGCTGGGTCGCGAGCACCAG 1917 Query 97408 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 97467 || ||||| || ||||| |||||||||| ||||||||| || | ||||||| || Sbjct 1918 GTGGATACCCGCCGCGCGGGCCTTCTGGGTGATGCGGACGATCGCGTCCTCGACGTC--- 1974 Query 97468 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGG 97525 |||| || |||||||||||| ||||| |||||||| | ||| |||||||||| Sbjct 1975 CTTGGGCGCGGTCATCATGAGGTCGGCGAGCTCGTCGACGATGGCCAGGATGTAGGGG 2032 Score = 123 bits (136), Expect = 2e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 97652 AGGTGGGGGATACCGTTGTACGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGT 97711 || || ||||| || | |||||| || ||||| ||||||||||||||||| | ||| | Sbjct 2219 AGATGCGGGATGCCCTCGTACGGCGTCAGTTCGACCATCTTCGGGTCGATGAGGATCATC 2278 Query 97712 TTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTG 97771 ||| || || | || ||| |||| || |||| ||||||||| | ||||||| Sbjct 2279 CGGACGTCGTCCGGGGTCGCCCGGGTCAGCAGTGACACCAACATCGAGTTCACGAAGCTG 2338 Query 97772 GACTTACCTGATCCGGTGGCGCCAGCCACCAGCAGGTGCGGCATTTTGGCCAGGTT 97827 ||||| || || ||||||| ||| || || |||||||| ||||| ||||| ||||| Sbjct 2339 GACTTGCCCGAACCGGTGGAGCCGGCGACGAGCAGGTGGGGCATCTTGGCGAGGTT 2394 >seq24208 Length=1566 Score = 185 bits (204), Expect = 6e-42 Identities = 221/298 (74%), Gaps = 3/298 (1%) Strand=Plus/Plus Query 97228 CGCCCCCACGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTC 97287 |||||||| || ||||| | |||||| ||| || | |||| |||||| || || Sbjct 431 CGCCCCCATCGGGAGGAACAGCCCGTCGCCCTGGCCGACCAGCTTCTCGGCGCCCGGCTG 490 Query 97288 GTCCAGGATCACCCGGCTATCGGTGAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCAC 97347 ||| ||||| |||||||| ||| ||| | |||||||| | ||| | |||||||| Sbjct 491 GTCGAGGATGACCCGGCTGTCGCCGAGGCTCGACGTGGCGAAGGCGAGTCGCGACGGCAC 550 Query 97348 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 97407 ||||| ||||| || || || || |||||||| || |||||||||||||| || ||||| Sbjct 551 GTTGGCCTTGATCAGACCCGTCACCACATCCACCGACGGCCGCTGCGTCGCGAGCACGAG 610 Query 97408 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 97467 || || ||||| |||||||| ||||| |||||| || || ||||||| || Sbjct 611 GTGGATGCCGGCGGCGCGCGCGAGCTGGGTGATGCGCACGATCGACTCCTCGACGTC--G 668 Query 97468 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGG 97525 | | | || ||||||| ||||| || || ||||||||||| |||| || ||||||| Sbjct 669 CGCGGCG-CGACCATCATCAGGTCGGCCAGCTCGTCGACCACGACCAGGAGGTAGGGG 725 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 97753 CATCGAGTTGATGAAGCTGGACTTACCTGATCCGGTGGCGCCAGCCACCAGCAGGTGCGG 97812 |||||||||||||||||| ||||| || |||||||||| ||| || || ||||||||||| Sbjct 1013 CATCGAGTTGATGAAGCTCGACTTGCCGGATCCGGTGGAGCCGGCGACGAGCAGGTGCGG 1072 Query 97813 CATTTTGGCCAGGTTC 97828 ||| || || |||||| Sbjct 1073 CATCTTCGCGAGGTTC 1088 >seq101977 Length=1174 Score = 152 bits (168), Expect = 4e-32 Identities = 189/254 (74%), Gaps = 5/254 (2%) Strand=Plus/Plus Query 97273 CTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGTGATGCTG-TGGCGAACG 97331 |||||| || || ||| ||||| || || || ||||| || || |||| ||||||| | Sbjct 3 CTCGGCGCCCGGCTGGTCGAGGATGACGCGACTGTCGGTCAGCGA-GCTGGTGGCGAAGG 61 Query 97332 AGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCT 97391 | || | || |||||||||| ||||| || || ||||| || || ||||||||||| | Sbjct 62 ACAGTCGGGAGGGCACGTTGGTCTTGATCAGACCGGTGACGACGTCGACGGAGGGCCGTT 121 Query 97392 GCGTCGCCAGGACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGT 97451 | || || ||||| || || || ||||| || || |||||||||| ||| ||||| || Sbjct 122 GGGTGGCGAGGACCAGGTGGATCCCGGCGGCCCGGGCCTTCTGGGTGATCCGGACGATCG 181 Query 97452 TGGCCTCGACTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTA 97511 | ||||||| || | | ||||| |||||| ||||| ||||| ||||||| | Sbjct 182 CGTCCTCGACGTC--CCGCGGAGCCG-TCATCATCAGGTCGGCGAGCTCGTCGATGATCC 238 Query 97512 CCACGATGTAGGGG 97525 ||| |||||| ||| Sbjct 239 CCAGGATGTACGGG 252 Score = 143 bits (158), Expect = 2e-29 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 97628 GGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTACGGGGTGAGTTCCACC 97687 |||| ||||| | ||| || ||||| ||||| || | |||||| ||||| || ||| Sbjct 415 GGCTGGGTGATGATCGGGGTCAGCAGGTGCGGGATGCCCTCGTACGGCGTGAGCTCGACC 474 Query 97688 ATCTTCGGGTCGATCATGATGAGTTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAA 97747 ||||| |||||||||| | | |||| | || ||| || | |||| || Sbjct 475 ATCTTGGGGTCGATCAGCACCATCCGGACCTCGGCCGGCGAGGCCCGCTGCAGCAGCGAG 534 Query 97748 ACCAGCATCGAGTTGATGAAGCTGGACTTACCTGATCCGGTGGCGCCAGCCACCAGCAGG 97807 |||||||||||||| | |||||||||||| || || ||||||||||| |||||||||||| Sbjct 535 ACCAGCATCGAGTTCACGAAGCTGGACTTGCCGGAACCGGTGGCGCCGGCCACCAGCAGG 594 Query 97808 TGCGGCATTTTGGCCAGGTTCA 97829 ||||| | ||||||||||||| Sbjct 595 TGCGGGGTCTTGGCCAGGTTCA 616 >seq216206 Length=797 Score = 104 bits (114), Expect = 2e-17 Identities = 362/553 (65%), Gaps = 29/553 (5%) Strand=Plus/Plus Query 99904 GTCGAGCTTGGGGAAATCAGGCTCGCGGATCTCATCTGGCCACCGCAGCGTCTGCAACGT 99963 ||||||| ||||| || | |||||| | ||| || ||| |||||||||||| | Sbjct 4 GTCGAGCCCCGGGAACTCGGCCTCGCGCACCTCGTCGTCCCAGAGCAGCGTCTGCAGCAG 63 Query 99964 CAGAACCTCATTCTTGCCCGTCACACGCAACACCGCCAG--GTGTTCCTTGCTCCGCAGG 100021 ||| ||||| | | ||| || |||| | ||||||| | || | |||| ||||| Sbjct 64 CAGCACCTCGT-CGTGC-----ACTCGCAGCGCCGCCAGCCGGGTGCGTTGC--CGCAGC 115 Query 100022 GTTACCCGTACGATGGCGACCTTGC---CGGCGTCAGAGAGCGTCCTAGCCAGCAGAGCG 100078 | | || ||||| || | ||| ||| || ||||| | |||||| ||| Sbjct 116 GAGATGCGCACGATCGC---CGTGCGCTCGGTCTCCTCCAGCGTGCGGCGCAGCAGCGCG 172 Query 100079 TAGGGCCGCACCGAGCCCTC-TACGTT--CAGGTAGTAGGGCTTGTCGAGCATGATCGGG 100135 || | | || ||||| | || ||||||||| |||||| ||||| Sbjct 173 TACGCCTTCATCGAGCTGGAATCCGGCGCCAGGTAGTAACTGCGGTCGAGGCGGATCGCA 232 Query 100136 TCGACCTCCCCGGCCGGCACGAACTCTACGACGTCAATCACCTTGTTGGTTTCGCTGGGC 100195 || |||| | | | ||||||||||| |||||||| || | | || ||| ||| Sbjct 233 TCCACCTGCTCCGAGGGCACGAACTCGACGACGTCGATGTCGCGGCTGCGCTCGGCCGGC 292 Query 100196 AGCTCTGCCAAGTCCTCATTGGTCAGTAGGGCGGTTTGCCCGTCGACCTCGAACACCTTG 100255 ||| |||| || || ||| | || | | | || | || || | ||| | ||||| Sbjct 293 AGCGACGCCAGATCGTCCTTGCTGAGCACGACCGTGCGGTCGCCGTCGTCGTAGGCCTTG 352 Query 100256 CCCAGATCGGC-CGTGTGG-ACCTGCTCACCGCAGCATTCACAGATCTTG---TGATACT 100310 | ||| || || || || ||| |||||| || || |||| || || Sbjct 353 TC--GATGTGCTCGAAGGGCACGACCTCGCCGCAGATCTCGCA---CTTGCGCTGGTAGC 407 Query 100311 TGATCCGCCCGCCGTCCTGGACGTGCGCCAGATGGCCCTTCAGGTCGTGCTCTTCGGTGG 100370 ||| ||||||| ||| | | ||||| || |||| | || |||||| ||||| |||| Sbjct 408 GGATGCGCCCGCTGTCGTCGTCGTGCACCTGATGCAGCGGCACGTCGTGGTCTTCCGTGG 467 Query 100371 CCGCGTACATCTTCACCGGCACGTTGACCAACCCGAAGTTGACCGCGCCTGTCCAAACCG 100430 ||| | | | ||| || ||||||||||||| ||||||| | | || ||| |||| | || Sbjct 468 CCGAGAAGAGCTTGACGGGCACGTTGACCAGCCCGAAGCTCAGCGAGCCCTTCCAGATCG 527 Query 100431 CTCTCATGCCTGC 100443 | ||||| ||||| Sbjct 528 CCCTCATTCCTGC 540 >seq50100 Length=1361 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 51807 TCACCCCGCACGACCTCCGGCACACCTGCGCCTCGCTGGCCATCTCCTCCGGCGCCAACG 51866 |||| ||||||||||| ||||||||| |||||||| || ||||| | ||||| |||| Sbjct 266 TCACTCCGCACGACCTGCGGCACACCGCTGCCTCGCTCGCTATCTCGGCGGGCGCGAACG 207 Query 51867 TCAAGGCGGTCCAGAACCTTCTGGGACAC 51895 ||||||| ||||||| | | || |||||| Sbjct 206 TCAAGGCCGTCCAGACCATGCTCGGACAC 178 >seq145472 Length=1506 Score = 82.4 bits (90), Expect = 5e-11 Identities = 249/375 (66%), Gaps = 21/375 (6%) Strand=Plus/Minus Query 99793 CAGTTCCACCTTGTAGGTGTCCTGGTACTTGTCAGGGTTGAACGGCGC-GGACAGCTCAT 99851 ||| || | || ||||||||||| ||||| |||| ||| | ||| || || | | Sbjct 1319 CAGCTCGAGCTGGTAGGTGTCCTCGTACTCCGACGGGTCGAA-GTCGCCGGCCATCGTCT 1261 Query 99852 CAACGAGCATCGCCGCCACCTTCAGCTCAGCCTCGGACAGTTC--CGGCTTGTTGTCGAG 99909 | | ||| |||||||| || || || | ||| | | || ||| | || |||||| Sbjct 1260 CGATCAGCGACGCCGCCATCTCGAGTTC--CTGCGGCCGGATCGTCGGTTCGTCGTCGAG 1203 Query 99910 CTTGGGGAAATCAGGCTCGCGGATCTCATCTGGCCACCGCAGCGTCTGCAACGTCAGAAC 99969 |||||| || | || |||| ||| || |||||| |||| ||||||| || || || Sbjct 1202 TGCGGGGAACTCGGCCTGCCGGACCTCGTCGGGCCACAGCAGTGTCTGCAGCGACATCAC 1143 Query 99970 CTCATTCTTGCCCGTCACACGCAACACCGCCAGGTGTTCCTTGCTCCGCAGGGTTACCCG 100029 | ||||| ||| |||| | ||||| || | | | ||||| || | | Sbjct 1142 GT------TGCCCACCACCCGCAGTGCGGCCAGACGTGTCCGGTTGCGCAGCGTGAACGT 1089 Query 100030 TACGATGGCGACCTTGCCGGCGTCAGAGAGCGTCCTAGC-CAGCAGAGCGTAGGGCCGCA 100088 |||| || | | | ||| ||| | ||||| ||| | |||||| |||||| | | Sbjct 1088 GGCGATCGCCAGCCGGTCGGTGTCGGCGAGCG-CCTGCCGCAGCAGCACGTAGGCCTTCG 1030 Query 100089 CCGAGCCCTCTACGT----TC-AGGTAGTAGGGCTTGTCGAGCATGATCGGGTCGACCTC 100143 || | || ||| || ||||||||||||||||||| |||||||||||||| Sbjct 1029 GTGA--CTTCGACGCCGGCTCGAGGTAGTAGGGCTTGTCGAAGTAGATCGGGTCGACCTG 972 Query 100144 CCCGGCCGGCACGAA 100158 | | ||||||||| Sbjct 971 GTCCGACGGCACGAA 957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353123479408175