Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_028978.1 Length=60609 Score E Sequences producing significant alignments: (Bits) Value seq84152 452 2e-122 seq134864 250 1e-61 seq231474 147 8e-31 seq12676 114 5e-21 seq189415 113 2e-20 seq20617 86.0 2e-12 >seq84152 Length=5826 Score = 452 bits (500), Expect = 2e-122 Identities = 591/801 (74%), Gaps = 44/801 (5%) Strand=Plus/Plus Query 55244 GTCGACCTGTCGCACTCCCCGAAGTGGCGGGAGCAGCTCGGCACGCTGGGCGGCGGCAAT 55303 |||||||| |||||| ||||||||| ||||||||||| |||| ||||||||||| Sbjct 4698 GTCGACCTCGGGCACTCGAAGAAGTGGCGTGAGCAGCTCGGGTCGCTCGGCGGCGGCAAC 4757 Query 55304 CACTTCATCGAGCTGTGCCTCGACCACCTCGACCGGGTGTGGTTGTTCCTGCACTCAGGT 55363 |||||||||||||||||||||||| | ||| ||||||||| ||||||||||||| ||| Sbjct 4758 CACTTCATCGAGCTGTGCCTCGACGAGTCCGATCGGGTGTGGATGTTCCTGCACTCCGGT 4817 Query 55364 TCTCGTGGCGTCGGTAACAAGATCGCGCAGAAGCACATTCAGGCCGCGCAGG-GCTATTG 55422 || || || ||||| ||| |||||||||| ||||| | ||||||| ||| | Sbjct 4818 TCGCGGGGTGTCGGCAACCGGATCGCGCAGCGACACATCGCGATCGCGCAGAAGCTG--G 4875 Query 55423 CCTCGCCAACGGGCTGCAGGTGC---CGCACAAGGATCTGGCGTACCT--CGTC-GAGGG 55476 || | || ||| |||| || || ||| || |||||||| |||| ||| Sbjct 4876 CCAGG--AAGTGGCACATCGTGCTCCCGAACCCGGACCTCGCGTACCTGCCGTCCGAG-- 4931 Query 55477 CACGGTCGAGTTCGACCGCTACCTCGTCGAATTGCGCTGGGCGCAGCGGTTCGCGTACTA 55536 ||| ||| |||| |||||| || || ||||| |||||||||||| | | Sbjct 4932 -ACGCCGGAGCTCGAGGTGTACCTCCGGGATCTGGCGTGGGCACAGCGGTTCGCGCTCGA 4990 Query 55537 CAACCGCGCCGAGATGATGGACCGATTCGCGCAGGCGTTCAATCATTGGATCGG-CGCGC 55595 |||||||| ||||||||||| || ||| |||||||||| || ||| | || | || Sbjct 4991 GAACCGCGCTGAGATGATGGATCGCTTCCGGCAGGCGTTCGCGCACTGGGTAGGTCACGA 5050 Query 55596 CCGGCTACCCGGCCGAGACGATCGTCGAGACC------ATCAACGCGCACCACAACTACA 55649 | || ||||||||||| |||||||| |||||| | ||||||||||||| Sbjct 5051 C-GGTGACCCGGCCGAGC------TCGAGACCGAGCGGATCAACACCCACCACAACTACA 5103 Query 55650 C--GCAGAAGGAGCAGCACGGCGGCCGTGATGTGTGGCTGACCCGCAAGGGCGCGATCGA 55707 | | || |||| ||||||||| || |||||||||||||||||||| |||||||| Sbjct 5104 CCGTCCGA--GAGCGACACGGCGGCAAGGACGTGTGGCTGACCCGCAAGGGTGCGATCGA 5161 Query 55708 CGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTTCGTATGTCGT 55767 |||| ||||||||||||||||| | || |||||||||||||| || | || || |||| Sbjct 5162 CGCGCACGAGGGTGTGCGGGGCATCATCCCGGGCTCGATGGGGACGCGGTCCTACATCGT 5221 Query 55768 GACCGGCAAGGGTAATCCCGAGGCG--TTGTGCTCAGCGCCGCACGGTGCGGGCCGCCGG 55825 |||||||||||| | | | |||| |||| || ||||||||||| ||||| || ||| Sbjct 5222 GACCGGCAAGGG--ACACGGCGGCGGTCTGTGTTCGGCGCCGCACGGCGCGGGGCGTCGG 5279 Query 55826 TTCTCGCGCACGAAGGCGCGCAAG---CTGTTCACGGTCGACGACCTCGAGG-CGCGTAT 55881 ||||| || | |||| |||| | || ||| | | ||| ||||||| |||| || Sbjct 5280 TTCTCACGGGCCGAGGC---CAAGCGTCGGTACACCGAGGCCGATCTCGAGGCCGCG-AT 5335 Query 55882 GCAGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCGACGCATACAA 55941 | || ||||||||||| | || | || |||| |||||||||| || | || ||||| Sbjct 5336 GACCGGGATCGAGTACCGGCACGGGGCGGAGTGGATCGACGAGATCCCGCAGGCGTACAA 5395 Query 55942 GCCGATCGACGTCGTGATGCACGACGCCGAGAGCCTGGTGTCGGTGGACGCTGAGCTGCG 56001 | ||||||||||||||| |||||||||| |||| |||||| | ||| ||||| Sbjct 5396 GAGCATCGACGTCGTGATGGCCGACGCCGAGCGCCTCGTGTCGATCGACCACACCCTGCG 5455 Query 56002 GCAGCTCTTGAACGTCAAGGG 56022 ||| | | ||||| ||||| Sbjct 5456 TCAGGTGCTCAACGTGAAGGG 5476 Score = 158 bits (174), Expect = 5e-34 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 54866 CTGATCAACTTTGCGAGCGAGGTCGACGACCAGACGCTTGCGCAGGCGCAGCAGATCGCC 54925 ||| ||||||| || |||| ||||||| ||||| | | ||||| || ||| ||| Sbjct 4379 CTGCTCAACTTCGCCTCCGAGATCGACGAGAAGACGATCGACCAGGCCAAGGAGACCGCA 4438 Query 54926 GATCTGCCTTTCGTCTATCCGCATGTGGCGCTGATGCCCGATGCGCATTTCGGCAAGGGC 54985 | ||||| ||||| | ||||| |||||| ||||||| |||||||| | ||||||||| Sbjct 4439 GCGCTGCCCTTCGTGCACCCGCACGTGGCGTTGATGCCGGATGCGCACTACGGCAAGGGA 4498 Query 54986 AGCAGTGTCGGCACGGTGATCCCGACCGAGGGCGCCGTCATTCCCGCCGCGGTGGGTGTC 55045 | ||||| || || |||||||| | | ||||||||| || |||||||| || ||| Sbjct 4499 TCCGCGGTCGGTACCGTCATCCCGACGGTCGACGCCGTCATCCCGGCCGCGGTCGGGGTC 4558 Query 55046 GATATTGGCTGCGGCATGATCGCGGCCCGCACCAC 55080 || || || |||||||||||||| | ||| ||||| Sbjct 4559 GACATCGGGTGCGGCATGATCGCCGTCCGGACCAC 4593 >seq134864 Length=649 Score = 250 bits (276), Expect = 1e-61 Identities = 440/633 (70%), Gaps = 26/633 (4%) Strand=Plus/Minus Query 55343 TGGTTGTTCCTGCACTCAGGTTCTCGTGGCGTCGGTAACAAGATCGCGCAGAAGCACATT 55402 ||||||||||||||||| || || || || ||||| ||| |||||| ||| | ||||| Sbjct 615 TGGTTGTTCCTGCACTCCGGGTCCCGCGGTGTCGGCAACCGGATCGCCCAGCACCACATC 556 Query 55403 CAGGCCGCGCAG--GGCTATTGCCTCGCCAACGGGCTGCAGGTGCCGCACAAGGATCTGG 55460 || || | | | | || | | | ||||||| | || || | | ||||| | Sbjct 555 GGGGTTGCCCGGAAGTCGATGG--TGGACAACGGGATCGAGCTGGCAGATCGCGATCTCG 498 Query 55461 CGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTCGAATTGCGCTGGGCGC 55520 ||||||| || |||||||| | ||||||||| |||||| | ||| | |||||| | Sbjct 497 CGTACCTGGTGGAGGGCACCGAGGAGTTCGACGCCTACCTGGCCGAGCTCACCTGGGCAC 438 Query 55521 AGCGGTTCGC-GTACTACAACCGCGCCGAGATGATGGACCGATTCGCGCAGGCGTTCAAT 55579 ||| |||||| | ||| |||||||| |||||||||||| || ||| || | | | | Sbjct 437 AGCAGTTCGCCGCACT-CAACCGCGACGAGATGATGGAGCGTGTCGTGCGGTCACTGCAG 379 Query 55580 CATTGGATCGGCGCGCCCGGCTACCCGGCCGAGACGATCGTCGAGACCATCAACGCGCAC 55639 |||||||||||| | | | ||||| |||| || | ||| Sbjct 378 TTCTGGATCGGCGCGGAGGTGGAGGTGTCCGAG-----------GACC-TCGGCTGCCAC 331 Query 55640 CACAACTACACGCAGAAGGAGCAGCACGGCGGCCGTGATG-TGTGGCTGACCCGCAAGGG 55698 |||||||||||| ||| |||| ||| | | || ||||| || |||||||||| Sbjct 330 CACAACTACACGGCCCGCGAGACGCACCACGGT-GAGCTGCTGTGGGTGTCCCGCAAGGG 272 Query 55699 CGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTTC 55758 || ||| |||| | | || || | || ||||| ||||| |||||||| || || Sbjct 271 TGCCATCAACGCCGAGGTCGGCGTCCCCGGGCTGATCCCGGGGTCGATGGGTACGGCGTC 212 Query 55759 GTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGT---TGTGCTCAGCGCCGCACGGTGC 55815 ||| |||||| |||||| ||| || |||| || ||||| || |||||||| || Sbjct 211 GTACGTCGTGTCCGGCAGGGGGAA---CGAGCAGTCCCTGTGCAGTGCACCGCACGGAGC 155 Query 55816 GGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACGGTCGACGACCTCGAGGC 55875 ||||| | |||||| ||||||||||||||| ||||||||||||||||| ||| Sbjct 154 AGGCCGGGCCTACTCGCGGACGAAGGCGCGCAAGACCTTCACGGTCGACGACCTGCGGGC 95 Query 55876 GCGTATGCAGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGACGAGATTCCCGACGC 55935 | ||| || |||||||||||| | ||||||| ||||||||||| |||| ||| Sbjct 94 GGCGATGGTCGGGATCGAGTACCGCGACACGGAGGCGTTCGTCGACGAGATCCCCGGCGC 35 Query 55936 ATACAAGCCGATCGACGTCGTGATGCACGACGC 55968 |||||| |||||| |||||| ||| || Sbjct 34 CTACAAGGACATCGACCAGGTGATGGCCGATGC 2 >seq231474 Length=516 Score = 147 bits (162), Expect = 8e-31 Identities = 331/493 (67%), Gaps = 22/493 (4%) Strand=Plus/Plus Query 55334 GACCGGGTGTGGTTGTTCCTGCACTCAGGTTCTCGTGGCGTCGGTAACAAGATCGCGCAG 55393 ||||| || ||| ||||||||||||| || || || |||||||| ||||||||||| ||| Sbjct 7 GACCGCGTCTGGCTGTTCCTGCACTCCGGCTCCCGCGGCGTCGGCAACAAGATCGCCCAG 66 Query 55394 AAGCACATTCAGGCCGCGCAGGGCTATTGCCTCGCCAACGGGCTGCAGGTGCCGCACAAG 55453 | ||||| ||| |||| | | |||| | || | | |||| || Sbjct 67 CACCACATCAAGGTCGCGAGCGACCTGTGCCGACGCTGGTGGATCGACCTGCCCGACCCC 126 Query 55454 GATCTGGCGTACCTCGTCGAGGGCACGGTCGA---GTTCGACCGCTACCTCGTCGAATTG 55510 || || || ||||| || ||||| || ||| |||| |||| || ||| || Sbjct 127 GACCTCGCCTACCTGGTGGAGGG---GGACGACACGTTCTGGGCCTACATCCGCGAGATG 183 Query 55511 CGCTGGGCGCAGCGGTTCGCG-TACTACAACCGCGCCGAGATGATGGACCGATTCGCGCA 55569 || ||||| |||| ||||| | || |||||||| ||||||||| |||| || | | Sbjct 184 CGGTGGGCCCAGCACTTCGCCCTGCT-CAACCGCGAGGAGATGATGCACCGCGTCCAGGA 242 Query 55570 GGCGTTCAATCATTGGATCGGCGCGCCCGGCTACCCGGCCGAGACGATCGTCGAGACCAT 55629 || || | | | |||||| ||| | ||| |||||||||| Sbjct 243 GGTCGTCGCGGACGAGCTGGGCGCGACCGTGCAGGCGGACGAGACGATC----------- 291 Query 55630 CAACGCGCACCACAACTACACGCAGAAGGAGCAGCACGG-CGGCCGTGATGTGTGGCTGA 55688 ||| |||||||||||||| || |||| || | ||| || || |||||| || Sbjct 292 -AACTGCCACCACAACTACACCGAGCGCGAGC-GCGTGTTCGGTCGCGAGGTGTGGGTGT 349 Query 55689 CCCGCAAGGGCGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGG 55748 ||||||||||||||||| ||| | |||||| || || ||||| || |||||||||| Sbjct 350 CCCGCAAGGGCGCGATCCGTGCGGGCAAGGGTGATCGCGGGCTGATCCCCGGCTCGATGG 409 Query 55749 GCACCTGTTCGTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGTTGTGCTCAGCGCCGC 55808 |||| ||||| ||||| || ||| ||| | || | || || || || |||| Sbjct 410 GCACGGCGTCGTACGTCGTCACGGGCCTGGGCTACCCGCCGTCGCTGATGTCGGCCCCGC 469 Query 55809 ACGGTGCGGGCCG 55821 |||| || ||||| Sbjct 470 ACGGGGCCGGCCG 482 >seq12676 Length=358 Score = 114 bits (126), Expect = 5e-21 Identities = 142/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 54888 TCGACGACCAGACGCTTGCGCAGGCGCAGCAGATCGCCGATCTGCCTTTCGTCTATCCGC 54947 ||||||||| ||||| |||||||| |||||| |||||| || |||| | ||| Sbjct 123 TCGACGACCTCACGCTCGCGCAGGCCAAGCAGACCGCCGAGCTCGACATCGTGTCGCCGT 182 Query 54948 ATGTGGCGCTGATGCCCGATGCGCATTTCGGCAAGGGCAGC-AGTGTCGGCACGGTGATC 55006 | ||||||||||||| || ||||| | |||||||| ||| | ||||| | || ||| Sbjct 183 ACCTGGCGCTGATGCCGGACGCGCACCTGGGCAAGGG-AGCGACGGTCGGTTCCGTCATC 241 Query 55007 CCGACCGAGGGCGCCGTCATTCCCGCCGCGGTGGGTGTCGATATTGGCTGCGGCATGATC 55066 || ||| || ||| |||| || |||||||| || || || || |||||||| ||| | Sbjct 242 CCCACCAGGGACGCGATCATCCCGGCCGCGGTCGGGGTGGACATCGGCTGCGGGATGCGC 301 Query 55067 GCGGCCCGCACC 55078 |||| | | ||| Sbjct 302 GCGGTCAGGACC 313 >seq189415 Length=2896 Score = 113 bits (124), Expect = 2e-20 Identities = 116/151 (77%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 38349 CGACGACCCCGAGGC---GTGGCGGGATAAGGCCGTGTGCGCGCAGACCGACCCCGAAAT 38405 ||||||| ||||| ||||| ||| ||| |||||||||||||||||||||| Sbjct 588 CGACGACATCGAGGACCAGTGGCAGGACCGGGCGCTGTGCGCGCAGACCGACCCCGAGGC 529 Query 38406 CTTCTTTCCAGAGCAGGGCGGCAGCACCCGCGAGGCCAAGCGCATTTGCGGCGGCTGCCA 38465 ||||| || ||| |||||||| |||||||||||||||||||| ||| |||||| | Sbjct 528 GTTCTTCCCCGAGAAGGGCGGCTCGACCCGCGAGGCCAAGCGCATCTGCCAGGGCTGCGA 469 Query 38466 GGTGTCCGACGAGTGCCTCGAATGGGCGCTG 38496 |||| | ||||||||||| | |||||| Sbjct 468 GGTGAAGGCGGAGTGCCTCGAGTACGCGCTG 438 >seq20617 Length=36039 Score = 86.0 bits (94), Expect = 2e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 39360 ATCGAGTGCATCGACGTCACGCAACACATGGGGTTCTGCCTCGGCAACGCCACCAAGTAC 39419 |||||||||||||| |||| | |||||| |||||| | |||||||| | |||||| Sbjct 28194 ATCGAGTGCATCGAGATCACCAAGCACATGAACTTCTGCTTGGGCAACGCGATGAAGTAC 28135 Query 39420 GTGTGGCGCTGCGACCTCAAGCACGACGCAATCGAGGACTTACGCAAGGCAATTCAGTGC 39479 | |||||| | |||||| |||| | ||||| | |||||||| | |||| | Sbjct 28134 ATCTGGCGCGCTGGGCTCAAGGGCGACAGTGTGGAGGATCTGCGCAAGGCCAAGCAGTAC 28075 Query 39480 ATCGAGTTTGAAATCGCCCGGC 39501 ||||| || || |||| ||||| Sbjct 28074 ATCGACTTCGAGATCGACCGGC 28053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193189438613066