Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq28654 154 3e-32 seq27512 143 6e-29 seq27511 141 2e-28 seq76306 125 2e-23 seq185851 87.8 4e-12 >seq28654 Length=3315 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || |||||||| ||||| || || || | ||||| | |||||| Sbjct 1035 AGTACCAAGTGAAGGGTCGACTCTTTCTGGATATTGTAGTCAGACAGGGTGCGGCCATCT 1094 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| || || || ||||||||||| |||||||| || ||||||| ||||||||| || Sbjct 1095 TCCAGTTGTTTACCAGCGAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCCTTATCT 1154 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| || ||||| |||||||| || ||||| || | ||| || || Sbjct 1155 TGAATCTTAGCTTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCCAAAGTTATTGTT 1214 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || || ||||| | |||||| Sbjct 1215 TTTCCAGTAAGTGTTTTGACAAATATTTGCATT 1247 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||||||||||||||| || || | ||||| | |||||||| |||||| Sbjct 1500 TGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCTAGCTGC 1559 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || |||||||| |||||||| || || |||| || || || || || ||||| Sbjct 1560 TTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGAATACCCTCTTTATCTTGAATCTTA 1619 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| ||||||||||| || ||||| ||||| || ||||| || || Sbjct 1620 GCCTTTACATTTTCAATGGTGTCAGATGGCTCCACCTCCAGAGTTATAGTCTTGCCTGTT 1679 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| | ||||| Sbjct 1680 AGTGTCTTGACAAATATTTGCAT 1702 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| | |||||||||||| || || ||||| || | || || | ||||| |||||||| Sbjct 815 GTGCAAAGTGGACTCTTTCTGAATATTATAGTCAGAGAGAGTACGGCCATCCTCCAGCTG 874 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| ||||| || || |||||||| || || |||| || || ||||| |||||||| Sbjct 875 CTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTT 934 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||| || ||||| ||| |||||| || | ||||| || || || || Sbjct 935 AGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACTTCTAATGTGATAGTTTTCCCTGT 994 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 || ||||||||||| | |||||| Sbjct 995 CAGTGTCTTTACAAAGATCTGCAT 1018 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | || | ||| || ||||||||||||||||| |||| || || Sbjct 569 ACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGACAGAGT 628 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || | ||| || || || ||||| || || |||||||| || |||| || Sbjct 629 GCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCC 688 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| |||||||| || || |||||||| ||||| || || ||||| | Sbjct 689 CTCCTTGTCTTGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAA 748 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| || || |||||||| ||||| | |||||| Sbjct 749 AGTGATGGTCTTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 790 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| | ||| || |||||||||||||| || || | || || | |||||| Sbjct 1947 AGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCT 2006 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | |||||||| || || ||||| |||||||| || ||||||| ||||| ||||| Sbjct 2007 TCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCT 2066 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || |||||| ||||| || |||||||| |||||| || | ||| || || Sbjct 2067 TGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTT 2126 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || ||||| | ||||| Sbjct 2127 TTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 2158 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || | ||||||||| || |||||||| || ||||| || | ||| || Sbjct 2393 ACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGT 2452 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| ||||||| ||||| || ||||| || | |||||||| || ||||||| || Sbjct 2453 GCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCC 2512 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || || || ||| || ||||| || || || || |||||| || | Sbjct 2513 TTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAA 2572 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || || ||||| || || || ||||| | ||||||||| Sbjct 2573 AGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 2617 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| || ||||| ||||||||||| || || | ||||| | |||||| Sbjct 1719 AGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGGGTGCGACCATCT 1778 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || || |||||||| || || || ||||| || | || || ||||| Sbjct 1779 TCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCT 1838 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || ||||| || || |||||| ||| || || || || || ||| Sbjct 1839 TGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTAATGGTC 1898 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || ||||| | |||||| Sbjct 1899 TTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1930 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || || || ||||| || |||||||| | | || | ||||||||||| || Sbjct 2184 TGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCATCTTCCAGTTGT 2243 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || ||||| | ||||| || || |||| || || ||||| ||||||||| Sbjct 2244 TTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATCTTT 2303 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| |||||||| ||||| || || ||||| | |||||| || ||||| || Sbjct 2304 GCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATGGTTTTTCCTGTA 2363 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 |||||||| ||||| | ||||||| Sbjct 2364 AGAGTCTTAACAAAGATCTGCATT 2387 >seq27512 Length=242 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||| || ||||| || || || || || | || || | |||||| || |||||||| || Sbjct 30 AGTAGATTCTTTCTGAATATTGTAGTCTGATAGTGTACGTCCATCCTCAAGCTGCTTTCC 89 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || || ||||| | ||||||||| ||||||| |||||||| || || || ||| || Sbjct 90 AGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGAATTTTTGCCTT 149 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || |||||||| ||||||||| ||||| || || ||||| ||||| || || || || Sbjct 150 AACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTCTTGCCAGTCAGTGT 209 Query 211097 CTTTACAAACACCTGCATT 211115 ||||||||| | |||||| Sbjct 210 CTTTACAAATATTTGCATT 228 >seq27511 Length=800 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| | ||| || || || || || |||||||| | | || | ||||||| Sbjct 428 AGCACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGACAATGTACGTCCATCT 369 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || ||||| || ||||| | |||||||||||||||| ||||| ||||| Sbjct 368 TCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCT 309 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| || || ||||| || || ||||| ||| || || | |||||| || Sbjct 308 TGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTT 249 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||||||||| | |||||| Sbjct 248 TTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 216 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| | ||| || || || || || || || || | || || | ||||||| Sbjct 656 AGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAGATAGTGTGCGTCCATCT 597 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || || ||||| | ||| || || || |||| || || || ||| Sbjct 596 TCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATACCCTCTTTATCC 537 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || || ||||| || || ||||| ||| || || | |||||| ||| Sbjct 536 TGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTC 477 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||||||||| | |||||| Sbjct 476 TTGCCAGTCAGTGTCTTTACAAAAATTTGCATT 444 >seq76306 Length=316 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| | ||| || || || ||||| ||||| || | | || | ||||||||||| || Sbjct 260 GTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGACAATGTGCGCCCATCTTCCAGTTG 201 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||| || || | |||||| || ||||||| ||||||||||| || ||||| Sbjct 200 CTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTT 141 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 | || ||||||||||| || ||||| ||| || || | ||||| || || || || Sbjct 140 TGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTCCCAGT 81 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||| ||||| || | ||||| Sbjct 80 TAAAGTTTTTACGAAGATTTGCAT 57 >seq185851 Length=438 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||||||||| || || |||||||| Sbjct 438 TCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGG 379 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| ||||| | || || ||||| | |||||| Sbjct 378 GTGATCGTCTTACCCGTCAATGTTTTGACAAAGATCTGCAT 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1155036864419295