Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq145430 87.8 2e-12 seq28654 86.0 5e-12 >seq145430 Length=989 Score = 87.8 bits (96), Expect = 2e-12 Identities = 186/266 (70%), Gaps = 10/266 (4%) Strand=Plus/Minus Query 14780 AACAGCGGTTTGTTTTACTATGTTCTGTGGAA-AT-TGTGCAGCGCCAAAAAGTGGATGA 14837 |||| ||||||||||| ||||| |||||||| || |||| | || || || |||||| Sbjct 989 AACAAGGGTTTGTTTTATTATGTGCTGTGGAATATATGTG-ATCGTAAAGAA-TGGATGG 932 Query 14838 ACCAAAATGTGCTTGACCAATTTTG-GAA-ATACGTTAA-ACTTCGCTTACAAAACACTA 14894 ||| |||||| | || |||| ||| ||| ||||| || | | | | ||||| | Sbjct 931 ACCGAAATGTTGTAGAAAAATTCAAAGAATATATGTTAAGACGT-GTTGCCGAAACA--A 875 Query 14895 CATGCAAGCTAGGTCTTTCGTCGCTTCCTATGGACCCGCCCATGAAAACATCACTACTAA 14954 ||| | | ||||| | || |||||| |||| || || |||| ||||| | Sbjct 874 AATGTTATATTGGTCTGACCTCCCTTCCTTTGGATCCCTTAATACAAACGTCACTGCCTG 815 Query 14955 CAGCCCTGTGGTACTGTGTTGAGTTGTCGTCCGACATATTTAAACACGACCAATTACATT 15014 |||| || ||||| ||||| || | || || ||||||||||| |||| | |||| Sbjct 814 CAGCTCTCTGGTATTGTGTAGAAATTTCATCATACATATTTAAAGACGATGACGCGCATT 755 Query 15015 ACACCAATGAAAGACTGCGACTTTAT 15040 || |||| |||||| ||| | |||| Sbjct 754 ACTCCAAAGAAAGATTGCAAAATTAT 729 >seq28654 Length=3315 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || || |||||||| || || ||||| ||||||||||| | | ||| || | Sbjct 2172 CGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAATGTACGGCCA 2231 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || || ||||| || ||||| ||||| | ||| || || | ||| | | ||||||| Sbjct 2232 TCTTCCAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTG 2291 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || ||| || || | | | | || ||| || ||| || || | ||||| Sbjct 2292 TCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCTACCTCTAAAGTGATG 2351 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| || || || ||||||||||| ||||| Sbjct 2352 GTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 2386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428095046388779