Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq10526 223 3e-53 seq27511 102 7e-17 seq28654 96.9 3e-15 seq27512 87.8 1e-12 >seq10526 Length=5062 Score = 223 bits (246), Expect = 3e-53 Identities = 635/965 (66%), Gaps = 21/965 (2%) Strand=Plus/Minus Query 109141 GCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTTG 109200 || ||||| || ||||||||||| || | || || |||||||| | || | Sbjct 4120 GCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTATACCTATA 4061 Query 109201 CCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAAC 109260 || ||| | | |||||||| ||||| ||||||||||| || ||||| |||||||| || Sbjct 4060 CCTAATCTTACTCATTTGCTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATTAAT 4001 Query 109261 GACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCGC 109320 || | ||| || |||||||| | || | || ||||| || |||| || Sbjct 4000 GATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGATCCTGTAGCGGCCGT 3941 Query 109321 GACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGGC 109380 || || |||||||| || || ||||| ||||| || | |||||||| |||||||| Sbjct 3940 GAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGA 3881 Query 109381 GTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATTG 109440 || | | ||||||||||| ||||||||||||||||| ||||| ||| | ||| Sbjct 3880 TTGTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGCCAATTAATGTCACTAAAACAA 3821 Query 109441 GCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACG-TTGTCGGACCCGTT 109499 || ||| | | || ||||| || || || || ||||||||| ||| || || | Sbjct 3820 GCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCTTTC 3761 Query 109500 TTATTTT--ATGCACGATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATTT 109557 || |||| | || | | | || ||| | ||| || | || || || ||| Sbjct 3760 TTCTTTTTAGTTGACAAAT---CTAAGAGAACACGATTTGTGCAGTCAGTAAAGGAGTTT 3704 Query 109558 TTACAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAG 109617 | | | ||||||||||| || || || || || ||||||||||| || || ||||| Sbjct 3703 CTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGGCAAA 3644 Query 109618 GGTGCCAATCCGAGTCTCGGCGACGCA-ACGCGCGACAGCAAAACGTACATTGCGTTGTT 109676 ||||| || || ||||| | || | | | | | ||| | ||| | Sbjct 3643 GGTGCTAACCCTGACCTCGGTAGCCCAGAAGATGGTGATTGTTATGTAAGT----TTGAT 3588 Query 109677 AAAAGAGTTGCGCGCCATGTTGGACGACTTGCAAACGGCCACCAA---CAAAACGTACGA 109733 ||||| || || | ||| | || || || | || | || || | ||||| Sbjct 3587 GAAAGAATTACGTGAGATGCTCGATGA---GCTCTCTGCTAAGAATGGTAAGAAATACGA 3531 Query 109734 ATTGACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGGC 109793 ||| || || |||||||| || | |||||||| | || || || || | ||| Sbjct 3530 ATTAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTTGTTGACTATGGTAAGGC 3471 Query 109794 GCAACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAA 109853 ||| | ||| |||| | || || || |||| ||||| ||||| || || |||||||| Sbjct 3470 TCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTCAAA 3411 Query 109854 CACGGACT-TAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGT 109912 ||| | || |||| ||| | |||||||||| |||||||||| || ||| | Sbjct 3410 -TGATACTCTTGGACATCAAACGCCATTGTACGCGCCTGCGTGGAATCCCAAGGAAACTT 3352 Query 109913 ACACGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTTA 109972 |||| | || | | || ||| | || | || |||| ||||| || ||| Sbjct 3351 ACACATCTGACTTTGGAGTAAAATACTTGCTGGCGCAGGGAGTGAATCCTAAGAAGATTG 3292 Query 109973 TAATTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCG-TCGTGCACGCCGACGACGCG 110031 || | || || || ||||| || || |||||||| |||| || || | ||| ||| Sbjct 3291 TAGTAGGTGTTGCTATGTATGGTCGTGGCTGGACTGGCGTTCATG-ATTACGAAGACAAC 3233 Query 110032 AATCCGTTTTTGGGCATCGCCTCCGGTCCCGTGGAAGGCACTTGGGAAAACGGCGTGGTG 110091 | ||| || |||| ||| | || || || |||| |||||| || |||| ||||| Sbjct 3232 ATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGACGGAGTGGTT 3173 Query 110092 GACTA 110096 ||||| Sbjct 3172 GACTA 3168 >seq27511 Length=800 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| ||||||||| ||||| || |||||||| ||||| | || || |||||| Sbjct 426 CACCAAGTGCAAAGTAGATTCCTTCTGAATATTATAATCTGACAATGTACGTCCATCTTC 367 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 || ||||| || ||| | |||||||| |||||||| || | |||||||||||| Sbjct 366 CAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTG 307 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTT 101208 ||| ||| || |||| | | || || | | ||| | || |||||||| Sbjct 306 AATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTTT 247 Query 101209 GCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 ||| |||| ||| || | ||||||||||||| Sbjct 246 GCCAGTCAGTGTCTTTACAAAAATTTGCATT 216 >seq28654 Length=3315 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 101035 GTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--ATCTTCCAAT 101092 ||||||||| ||||||||||| || ||||| || | | ||| | || |||||| ||| Sbjct 1955 GTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAG--ACAGTGTACGACCATCTTCTAAT 2012 Query 101093 TGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATT 101152 || ||||||||| | ||||| | |||||| || || | |||||||||||| ||| Sbjct 2013 TGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCTTGGATT 2072 Query 101153 TTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCC 101212 || |||||||| | | || || | | ||| | ||||| ||||| || Sbjct 2073 TTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGTTTTTCCA 2132 Query 101213 GTCAATGTTTTAATAAAAATTTGCAT 101238 || | |||||||| ||| |||||||| Sbjct 2133 GTGAGTGTTTTAACAAAGATTTGCAT 2158 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||| | ||||| ||||| ||||| |||||||||||||| | || ||| |||||| Sbjct 1265 CACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCTTC 1324 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 |||||| || || ||| | || || | ||||||||| ||| | ||| || || || Sbjct 1325 CAATTGCTTTCCAGCAAAAATGAGACGCTGTTGGTCTGGGGGGATGCCCTCCTTATCCTG 1384 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT--TTCGACGGTAATAGTT 101206 ||||| ||| |||| | | || || | | ||| | ||| | |||||| || Sbjct 1385 TATTTTAGCTTTGACATTCTCGATTGTGTCAGATG--GTTCTACTTCCAGGGTAATGGTC 1442 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || || ||||||||||| | ||| |||||||| Sbjct 1443 TTTCCAGTCAATGTTTTGACAAATATTTGCAT 1474 >seq27512 Length=242 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 101036 TGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGA--ATCTTCCAATT 101093 || ||||| |||||||| ||||||||||| || | ||||| | | ||| || | | Sbjct 25 TGTAAAGTAGATTCTTTCTGAATATTGTAGTCTG--ATAGTGTACGTCCATCCTCAAGCT 82 Query 101094 GTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTT 101153 | || || ||| | |||||||||||||||||| || | |||||| || || ||||| Sbjct 83 GCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGAATGCCTTCCTTATCTTGAATTT 142 Query 101154 TTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCG 101213 || || |||| | | || || | || | ||| | || ||||| ||||| | Sbjct 143 TTGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACTTCCAGTGTGATAGTCTTGCCAG 202 Query 101214 TCAATGTTTTAATAAAAATTTGCATT 101239 ||| ||| || | ||| ||||||||| Sbjct 203 TCAGTGTCTTTACAAATATTTGCATT 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408277396345497