Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq207439 165 3e-36 seq101952 118 3e-22 seq185731 113 1e-20 seq238992 100 9e-17 seq111113 100 9e-17 seq252665 98.7 3e-16 >seq207439 Length=1826 Score = 165 bits (182), Expect = 3e-36 Identities = 264/377 (70%), Gaps = 18/377 (5%) Strand=Plus/Minus Query 33976 GTGCTTGGCTCGCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCG---CGGTAC 34032 |||| | |||||||||||||||||| | | |||| || ||| ||||| |||| | Sbjct 1816 GTGCGGGTCTCGCCGTTGCGGTGCTTGACCACCATCAGGTCGGCCTCGCCGGGGCGGTCC 1757 Query 34033 TGGGTGTCCGGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGC 34092 | || ||| ||| | ||| |||| |||| |||| ||||| ||||||||| Sbjct 1756 TCGGAGTCG------TAGGCATCGGGCCGGTGGACGAGGATGACGACGTCCGCGTCCTGC 1703 Query 34093 TCGATCGCCCCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCC 34152 |||| || || ||||| ||||||||||||| |||||| ||||||| | |||||||||| Sbjct 1702 TCGAGCGAACCCGACTCACGCAGGTCCGACAGCATCGGCCGCTTGTCGGTCCGCTGCTCC 1643 Query 34153 AGGGAGCGGTTGAGCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGC 34212 | ||||| ||||| || ||| | | ||| || | | |||||| |||| || | | Sbjct 1642 GCGCCACGGTTCAGCTGGGAGAGCGCCACCACCGGCAGCTCGAGCTCCTTGGCGAGCAAC 1583 Query 34213 TTGCACTGGCGGGACATGTCGCTGACGTCCT--CGGTGCGAGTTGA----CTTGCCGGAG 34266 || ||| ||||| | || ||| |||| || | || | | ||||||||| Sbjct 1582 TTCATCTGCCGGGAGAACTCCGAGACCTCCTGCTGGCGGGACTCCACCTTCTTGCCGGA- 1524 Query 34267 CTCTCCAGCAACTGCAGGTAGTCCACCACCAGCAGGCTCAACCCATGGCGCTGCTTGTGA 34326 | || || ||||||||||||||| || | ||| ||| | || ||||||||| | Sbjct 1523 --CGTCATCAGCTGCAGGTAGTCCACGACGATCAGCTTCAGGTCGTGCCGCTGCTTGAGC 1466 Query 34327 CGCCGGGCCAAGGCCCG 34343 ||||| ||| |||||| Sbjct 1465 CGCCGCGCCTTGGCCCG 1449 >seq101952 Length=1540 Score = 118 bits (130), Expect = 3e-22 Identities = 132/174 (76%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 34054 TCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGC 34113 || || |||| || | ||||| | ||||||||||||||| | || |||||||||||| Sbjct 693 TCCTCGCGGTGCAGCAGGATGATGATGTCGGCGTCCTGCTCCAGCGAGCCGGACTCGCGC 752 Query 34114 AGGTCCGACATCATCGGTCGCTTGTTCGGC-CGCTGCTCCAGGGAGCGGTTGAGCTGCGA 34172 ||||| | |||||| || |||||| ||||| || ||| || ||||||||||| || Sbjct 753 AGGTCGGCCATCATGGGGCGCTTG-TCGGCGCGGGTCTCGGGGCCACGGTTGAGCTGGGA 811 Query 34173 CAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGCACTGGCGGGA 34226 ||| ||| | ||||| | |||||| ||||||| |||||| ||| ||||| Sbjct 812 GAGCGCGACGATCGGGATCTCGAGCTCCTTGGCCAGCAGCTTGATCTGCCGGGA 865 >seq185731 Length=264 Score = 113 bits (124), Expect = 1e-20 Identities = 175/246 (71%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 33987 GCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTAC--TGGGTGTCCGGG 34044 |||||| |||||||| |||||||||| || ||| ||||| | || | ||| || || Sbjct 250 GCCGTTACGGTGCTTGGCGATGATCAGGTCGGCCTCGCCG--GCACGTTCGGTCTCGGGC 193 Query 34045 TGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCG 34104 | |||| ||| |||| |||| | | ||||||| |||||||||||||| ||| Sbjct 192 TCGTAGAGATCGGGGCGGTGGACGAGGAGCACGACGTCGGAGTCCTGCTCGATCGAGCCG 133 Query 34105 GACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGA--GCGGT 34162 ||||| |||||||| |||| |||||| ||||| | |||||||| |||| |||| Sbjct 132 GACTCACGCAGGTCGGACAGCATCGGCTTCTTGTCGGTGCGCTGCTC--GGGACCACGGT 75 Query 34163 TGAGCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGCACTGGC 34222 | ||||| || | | | ||| || | | |||||| | || || |||||| ||| | Sbjct 74 TCAGCTGGCTCATCGCCACCACCGGAACCTCGAGCTCCTTCGCGAGAAGCTTGATCTGCC 15 Query 34223 GGGACA 34228 |||| Sbjct 14 TTGACA 9 >seq238992 Length=528 Score = 100 bits (110), Expect = 9e-17 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 34052 CCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGC 34111 |||| || ||||| ||||| | ||||||||||||||||||||||||| ||| || | Sbjct 117 CCTCCTCGCGGTAGACGAAGAGGATCACGTCGGCGTCCTGCTCGATCTGGCCGCTGTCAC 176 Query 34112 GCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCG 34171 | ||||| || ||| || ||||||| ||| |||| ||| | | |||| ||||||||| Sbjct 177 GGAGGTCGGATGGCATGGGCCGCTTGTCCGGACGCTTCTCAACGTCGCGGCTGAGCTGCG 236 Query 34172 ACAGCACGATCAC 34184 || | | ||||| Sbjct 237 CCACCGCCATCAC 249 >seq111113 Length=4129 Score = 100 bits (110), Expect = 9e-17 Identities = 248/368 (67%), Gaps = 19/368 (5%) Strand=Plus/Minus Query 33987 GCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGT--GTCCGGG 34044 ||||||||||||||| ||| ||| | || ||| ||||| | | ||| ||| | Sbjct 4020 GCCGTTGCGGTGCTTGCCGAGGATGATGTCGGCCTCGCCGGCG--CGGGGATCGTCGCGC 3963 Query 34045 T-GATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCC 34103 | ||| || ||| |||| || | || | || ||| ||||||||||| | || || Sbjct 3962 TCGATGGAG-TCGGGGCGGTGCAGCAGGATCACCATGTCCGCGTCCTGCTCCAGCGAACC 3904 Query 34104 GGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGC--GG 34161 ||||| || || ||||||| | |||||||||| | |||||||| |||| | || Sbjct 3903 CGACTCACGGAGATCCGACACCTGGGGTCGCTTGTCGGTGCGCTGCTC--GGGACCACGG 3846 Query 34162 TTGAGCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGCACTGG 34221 |||||||| | ||| ||| || | | |||||| |||||| |||||| ||| Sbjct 3845 TTGAGCTGGCTGATGGCGACCACCGGCACCTCGAGCTCCTTGGCCAACAGCTTGAGCTGA 3786 Query 34222 CGGGACATGTCGCTGACGTCCT--CGGTGCGAGTTGA----CTTGCCGGAGCTCTCCAGC 34275 ||||| | || ||| |||| || |||| | || |||||| || | || | Sbjct 3785 CGGGAGAACTCCGAGACCTCCTGCTGGCGCGACTCGACCTTCTTGCCCGA---CGTCATC 3729 Query 34276 AACTGCAGGTAGTCCACCACCAGCAGGCTCAACCCATGGCGCTGCTTGTGACGCCGGGCC 34335 | ||||| |||||| | |||| ||| | | | || ||||||||| | || |||||| Sbjct 3728 AGCTGCATGTAGTCGATGACCACCAGCCGTAGATCGTGACGCTGCTTGAGGCGACGGGCC 3669 Query 34336 AAGGCCCG 34343 ||| || Sbjct 3668 TTGGCGCG 3661 >seq252665 Length=347 Score = 98.7 bits (108), Expect = 3e-16 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 34054 TCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGC 34113 ||||| ||||| || ||||| | | ||||||| ||||| ||||||| ||||| |||||| Sbjct 190 TCGTCGCGGTAGACAAACATCACCGCGTCGGCATCCTGTTCGATCGAGCCGGATTCGCGC 131 Query 34114 AGGTCCGACATCATCGGTCGCTTGT-TCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCGA 34172 |||||||||| |||||| || |||| | || ||| || | || |||| |||||| Sbjct 130 AGGTCCGACAGCATCGGACGTTTGTCTTCGCGGCT-TTCGACGGCGCGGGAGAGCTGGCT 72 Query 34173 CAGCACGATCACGGGGAT 34190 ||| ||| |||||||| Sbjct 71 CAGTGCGAGGACGGGGAT 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159936015572670