Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_030916.1 Length=56212 Score E Sequences producing significant alignments: (Bits) Value seq219746 145 3e-30 seq54171 136 1e-27 seq208699 102 3e-17 seq189415 89.7 2e-13 seq229633 84.2 8e-12 >seq219746 Length=1062 Score = 145 bits (160), Expect = 3e-30 Identities = 211/297 (71%), Gaps = 11/297 (4%) Strand=Plus/Plus Query 47266 TGGTTCAGCCCGGAGTGCACCAACCACTCGCAGGCCAAGGGCAAGAAGCGCGCCCTGCGC 47325 |||||| |||| ||||||| | |||||| ||| |||||| ||||||||| Sbjct 10 TGGTTCTCCCCGTCGTGCACCCATCACTCGGTCGCCCAGGGCATCAAGCGCGCC------ 63 Query 47326 GGCGACGCCCAGCCGGACCTATTCGGCGAGATCCTGCCCGACGCCGCCGCCGAGCGGTCC 47385 ||| | || |||| ||| ||| | ||||||||| ||||||||| || || Sbjct 64 ---GACAAGCGCCCCGACCCCAACGGGGAGGTGTTGCCCGACGACGCCGCCGAACGCTCG 120 Query 47386 AGAGCGACGATGTGGGACGTCGTCCGGTTCACCGAGCACTTCAAGTACCGGATC-GTCAT 47444 | ||||||||||||||||||||||||||| ||||| || | |||||| |||| || | Sbjct 121 CGGGCGACGATGTGGGACGTCGTCCGGTTCGCCGAGTACCACCAGTACC-GATCAATCGT 179 Query 47445 CACCGAGAACGTGATCGAGGCCGCCGCGTGGGCACTGTTCGACGCGTGGATCGCCGCGAT 47504 | ||| ||||| |||| | ||| | |||||| ||||| ||||||||| Sbjct 180 CGTCGAAAACGTTGTCGACGTGTATTTCTGGCCGTTGTTCGCGCCGTGGCTCGCCGCGAC 239 Query 47505 GCGCGCCCTCGGCTACCGGCACCGCCTCGTCATGCTGAACTCGATGCACGCGCAGCT 47561 | |||||| |||||| ||| |||| ||| |||||||||||||||||||| Sbjct 240 GGACGCCCTGGGCTACAACCACGAGATCGTGTGGCTCAACTCGATGCACGCGCAGCT 296 Score = 86.0 bits (94), Expect = 2e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 47815 GACATCATCGACTGGACGAACCTCGGCCAGCGCATCGGCGACCGCGACAAGGCC-CTCGC 47873 ||||||||||||||| || | |||| |||||||| |||||| | | | || || || Sbjct 526 GACATCATCGACTGGTCGCTGCCCGGCACCCGCATCGGTGACCGC-AAACGCCCGCTGGC 584 Query 47874 CGAGAAGACGCTCGCGCGGATCCGCGCCGGCATCGAGCGCTACTGGCGACCGATGCTCAT 47933 ||||||||| | | || |||| ||||| ||||| ||||||||| ||||| | |||| Sbjct 585 CGAGAAGACCATGACCCGTATCCAGGCCGGGATCGACCGCTACTGGGGACCGTTCCTCAC 644 Query 47934 CGAG 47937 |||| Sbjct 645 CGAG 648 >seq54171 Length=260 Score = 136 bits (150), Expect = 1e-27 Identities = 181/262 (69%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 28508 GATCCCACCTGGCTCCCCGAGGTGCTGCGCGCCGCCGGGCTCCGCTGCGACGTCTACCCC 28567 ||||||| |||||||||||||||||||||||| || | ||| |||||| |||||||| Sbjct 1 GATCCCATCTGGCTCCCCGAGGTGCTGCGCGCAGCGCGCCTCACATGCGACATCTACCCC 60 Query 28568 GGCGCGATGAACCGCGGCCACGGCGACTTCGGCGACATCTGGGGCGTCGTCGCCCACCAC 28627 ||||| | | |||||||||||||||||||| ||||||||| || ||| ||||||| Sbjct 61 GGCGCATTCCAGCGCGGCCACGGCGACTTCGGGTCGATCTGGGGCATCCTCGACCACCAC 120 Query 28628 ACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCCTCGGCCTCGCG 28687 || | ||||| || ||| Sbjct 121 ACCGGCAGCTTCGGCGAGACGCCGCGCGGTATCGCCGAGCACCCGTCGCTCGGTCTGGCG 180 Query 28688 TCGCAGCTCTACCTGTCCCGCGACGG--CGTCTACACGCTGTGCGGTGTCGGGATCGCGT 28745 |||||||| |||| || | ||| || || |||||||||||| |||||||||||||| | Sbjct 181 TCGCAGCTGCACCTCTCGC-CGAAGGGTCG-CTACACGCTGTGTGGTGTCGGGATCGCCT 238 Query 28746 GGCACGCCGGCACCGGCTCCTG 28767 |||||||||||||||| || || Sbjct 239 GGCACGCCGGCACCGGGTCGTG 260 >seq208699 Length=382 Score = 102 bits (112), Expect = 3e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 6388 ACCGACCTCGTCAGCCCTGCCGAGCTCACCGGGTTCGCCCGGGCCGCGCAGGAGGACATC 6447 || ||| || || ||| ||| || ||||||| |||||| ||| | | ||||| | Sbjct 21 ACTGACGTCATCGACCCGGCCACTCTGACCGGGTACGCCCGCGCCTCCCTCGAGGAGTAC 80 Query 6448 GAGCGCACCAAGGGCACGCTCGCCCGGTGGCTGCCGAACACCAGCGTCCCCGACGTGGTG 6507 ||| ||||||| ||||||||| || ||||||||| || |||| | ||||| ||| Sbjct 81 GAGAAGCGCAAGGGCTCGCTCGCCCAGTACCTGCCGAACCTCAACGTCGCAGACGTCGTG 140 Query 6508 GTCCGCACCGTCGTCGGCACCGACGGCAACGGCG-AGCTCGCGAAGTTCCGCGCGTTCGA 6566 ||||| ||||||||| | ||| | | | | || |||||||||||| |||||||| Sbjct 141 GTCCGGTTCGTCGTCGGG-CAGACCGGACTCGTGCAGGCCGCGAAGTTCCGTGCGTTCGA 199 Query 6567 CGCCGAGACCCCGATCGG 6584 ||| ||| || | |||| Sbjct 200 CGCGGAGCCCGAGGTCGG 217 >seq189415 Length=2896 Score = 89.7 bits (98), Expect = 2e-13 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 46489 AGTGGCACGACCTCGGCCTCTGCCGCG-AGGTCGACCCGGACCTGTGGTTCCCCGAGCGG 46547 ||||||| |||| | || ||| ||| || |||||| || || ||||||||| | Sbjct 571 AGTGGCAGGACCGGGCGCTGTGC-GCGCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAG 513 Query 46548 GGCGGATCGACCCGCGACGCGAAGCGGATCTGCAGGCGCTGCCCCGTCCAGGAGAAGTGC 46607 ||||| ||||||||||| || ||||| |||||| | ||||| || ||| | ||||| Sbjct 512 GGCGGCTCGACCCGCGAGGCCAAGCGCATCTGCCAGGGCTGCGAGGTGAAGGCGGAGTGC 453 Query 46608 CTGCAGCAGGCACTCGACGCGGGGGAGCGGTTCGGAGTGTGGGGCGGCGTCAGCGAACGC 46667 || || | || || || || ||||||||||| | |||||||| || ||| || Sbjct 452 CTCGAGTACGCGCTGCACAAGGACGAGCGGTTCGGTATCTGGGGCGGTCTCTCCGAGCGG 393 Query 46668 GAACGCCG 46675 || || || Sbjct 392 GAGCGTCG 385 >seq229633 Length=1804 Score = 84.2 bits (92), Expect = 8e-12 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 46503 GGCCTCTGCCGCGAGGTCGACCCGGACCTGTGGTTCCCCGAGCGGGGCG-GATCGACCCG 46561 ||||| || | ||||||||||||| ||||||||||||| |||| || | ||||| Sbjct 1582 GGCCTGTGTAGTCAGGTCGACCCGGAGTTGTGGTTCCCCGACATCGGCGAGAAC-ACCCG 1640 Query 46562 CGACGCGAAGCGGATCTGCAGGCGCTGCCCCGTCCAGGAGAAGTGCCTGCAGCAGGCACT 46621 | ||||||||||||||| | |||||| ||| || | ||||| | | || || Sbjct 1641 GGCAGCGAAGCGGATCTGCGCGGACTGCCCGGTCACCGATGAATGCCTCGAATACGCCCT 1700 Query 46622 CGACGCGGGGGAGCGGTTCGGAGTGTGGGGCGGCGTCAGCGAACGCGAACGCCGCCAGAT 46681 | ||| | || |||||||| |||||||| || || || | |||||||| | ||| Sbjct 1701 GGCCGCCGATGAACGGTTCGGGGTGTGGGGTGGACTCGACGCCGGTGAACGCCGGCGGAT 1760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179165335303204