Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_030927.1 Length=45858 Score E Sequences producing significant alignments: (Bits) Value seq248049 286 1e-72 seq136878 257 5e-64 seq226360 154 4e-33 seq153771 152 2e-32 seq210609 116 1e-21 seq4597 89.7 2e-13 seq85310 80.6 8e-11 >seq248049 Length=1043 Score = 286 bits (316), Expect = 1e-72 Identities = 279/357 (78%), Gaps = 2/357 (1%) Strand=Plus/Plus Query 36165 CACTACATGGCAGGCGAAACCATCATCACGGTAATCGGCAACCTGACAGCCGATCCGGAA 36224 ||| ||||||||||||| |||||||||||||| ||||||||||||| |||||||| || Sbjct 547 CACGACATGGCAGGCGACACCATCATCACGGTGGTCGGCAACCTGACGGCCGATCCCGAG 606 Query 36225 CTGCGGTTCACTCCGTCCGGCGCGGCGGTCGCGAACTTCACGGTCGCTTCGACTCCGCGA 36284 ||||| ||||| | ||||||||||| || ||||||||||| ||||| ||||| || || Sbjct 607 CTGCGCTTCACCGCCTCCGGCGCGGCCGTTGCGAACTTCACCGTCGCATCGACCCCCCGG 666 Query 36285 CAGTTCGACCGGGAC-GCGAACGAGTGGAAGGACGGCGATCCGCTGTTCATGCGCTGCAA 36343 | ||||||| | ||| |||||||||||||||||| | || ||| |||||||||| Sbjct 667 ACGCTCGACCGCACCAGCG-GCGAGTGGAAGGACGGCGAGGCCCTCTTCCTGCGCTGCAA 725 Query 36344 CCTGTGGCGTGACGCGGCGGAGAACGTCACGGACTCGCTGTCGAAGGGGACTCGGGTCAT 36403 | | ||||| | || || |||||||||||||| ||||| | || | || ||||| Sbjct 726 CATCTGGCGGCAGGCTGCCGAGAACGTCACGGAGTCGCTCACCCGCGGCTCCCGCGTCAT 785 Query 36404 CGTGCAGGGCCGGCTGAAACAGCGGAGCTACGAGGACAAAGAGGGCGTCACGCGGACCAT 36463 ||| |||||||| || ||||| |||| |||| ||| || |||| | ||| ||| | Sbjct 786 CGTCACCGGCCGGCTCAAGCAGCGCAGCTTCGAGACCAAGGAAGGCGAGAAGCGCACCGT 845 Query 36464 CGTCGAGCTGGAAGTGGACGAGATCGGTCCGTCCCTGAAGTACGCGACGGCGAACGT 36520 | |||||||||| || ||||||||||| || || ||| ||||||||| || || || Sbjct 846 CATCGAGCTGGAGGTCGACGAGATCGGCCCCTCGCTGCGGTACGCGACCGCCAAGGT 902 >seq136878 Length=1830 Score = 257 bits (284), Expect = 5e-64 Identities = 268/352 (76%), Gaps = 0/352 (0%) Strand=Plus/Minus Query 36169 ACATGGCAGGCGAAACCATCATCACGGTAATCGGCAACCTGACAGCCGATCCGGAACTGC 36228 ||||||| ||||| || ||| |||| || ||||| |||||||| || ||||| ||||||| Sbjct 407 ACATGGCCGGCGACACGATCCTCACCGTCATCGGGAACCTGACCGCGGATCCCGAACTGC 348 Query 36229 GGTTCACTCCGTCCGGCGCGGCGGTCGCGAACTTCACGGTCGCTTCGACTCCGCGACAGT 36288 | ||||| |||||||| |||||||| || |||||||| || || || || ||||| || Sbjct 347 GTTTCACCCCGTCCGGTGCGGCGGTGGCCAACTTCACCGTTGCGTCCACGCCGCGGATGT 288 Query 36289 TCGACCGGGACGCGAACGAGTGGAAGGACGGCGATCCGCTGTTCATGCGCTGCAACCTGT 36348 ||||||| | | ||||| ||||| |||||||| | ||||||||||| |||| | | | Sbjct 287 TCGACCGTCAGACCAACGAATGGAAAGACGGCGAGGCACTGTTCATGCGGTGCAGCATCT 228 Query 36349 GGCGTGACGCGGCGGAGAACGTCACGGACTCGCTGTCGAAGGGGACTCGGGTCATCGTGC 36408 |||| || ||||| |||||||| |||| || | ||||| |||| ||||||||| Sbjct 227 GGCGGGAGGCGGCCGAGAACGTGGCGGAGAGCCTCACCAAGGGTGCTCGTGTCATCGTGT 168 Query 36409 AGGGCCGGCTGAAACAGCGGAGCTACGAGGACAAAGAGGGCGTCACGCGGACCATCGTCG 36468 ||| ||||| || ||||| |||||| | ||||| | | ||| || | |||| Sbjct 167 CGGGTCGGCTCAAGCAGCGCTCCTACGAAACCCGCGAGGGTGAGAAGCGCACGGTGGTCG 108 Query 36469 AGCTGGAAGTGGACGAGATCGGTCCGTCCCTGAAGTACGCGACGGCGAACGT 36520 |||| || || || ||| ||||||| || |||||||||||||| || || || Sbjct 107 AGCTCGAGGTCGAGGAGGTCGGTCCCTCGCTGAAGTACGCGACCGCCAAGGT 56 >seq226360 Length=376 Score = 154 bits (170), Expect = 4e-33 Identities = 229/324 (71%), Gaps = 20/324 (6%) Strand=Plus/Plus Query 36172 TGGCAGGCGAAACCATCATCACGGTAATCGGCAACCTGACAGCCGATCCGGAACTGCGGT 36231 |||| ||||| || ||||||||||| ||||||||||||| ||||| ||||| ||||| | Sbjct 7 TGGCCGGCGACACGATCATCACGGTGGTCGGCAACCTGACGGCCGACCCGGAGCTGCGCT 66 Query 36232 TCACTCCGTCCGGCGCGGCGGTCGCGAACTTCACGGTCGCTTCGACTCCGCGACAGTTCG 36291 ||| | | ||| || || ||||||||||| |||| ||| | Sbjct 67 ACACGCAGAGCGGGCTCGCCGTGGCGAACTTCACCATCGC-------------CAGCACC 113 Query 36292 ACCGGGACGCGAACGAGTGGAAGGACGGCGATCCGCTGTTCATGCGCTGCAACCTG-TGG 36350 || ||| | ||||||||||||||||| | |||||| | || || |||| ||| Sbjct 114 CCC----CGC-ANNGAGTGGAAGGACGGCGAGGCCCTGTTCCTCCG-GGCCTCCTGCTGG 167 Query 36351 CGTGACGCGGCGGAGAACGTCACGGACTCGCTGTCGAAGGGGACTCGGGTCATCGTGCAG 36410 ||||| || ||| ||||| | | |||||| | ||||| | || ||||||| |||| Sbjct 168 CGTGAGTTCGCCGAGCACGTCGCCGGGTCGCTGACCAAGGGCAGCCGCGTCATCGCGCAG 227 Query 36411 GGCCGGCTGAAACAGCGGAGCTACGAGGACAAAGAGGGCGTCACGCGGACCATCGTCGAG 36470 ||||| ||||| ||||| |||||| ||| || ||| || ||| ||| ||||| Sbjct 228 GGCCGCCTGAAGCAGCGCTCCTACGACGACCGCGATGGCAACAAGCGCACCGCGATCGAG 287 Query 36471 CTGGAAGTGGACGAGATCGGTCCG 36494 || || || ||||||||||| ||| Sbjct 288 CTCGAGGTCGACGAGATCGGCCCG 311 >seq153771 Length=831 Score = 152 bits (168), Expect = 2e-32 Identities = 227/322 (70%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 36199 TCGGCAACCTGACAGCCGATCCGGAACTGCGGTTCACTCCGTCCGGCGCGGCGGTCGCGA 36258 |||||||||| | ||| || || ||||||||||| || || ||||| || ||||| | Sbjct 418 TCGGCAACCTCGTCGACGACCCCGAGCTGCGGTTCACGCCCTCGGGCGCCGCAGTCGCCA 359 Query 36259 ACTTCACGGTCGCTTCGACTCCGCGACAGTTCGACCGGGACGCGAACGAGTGGAAGGACG 36318 ||||| |||| || || ||||| |||| |||| | | ||||| ||| |||||| Sbjct 358 ACTTCCGCATCGCCTCCACCCCGCGCACGTTCAACCGTCAGACCAACGACTGGGAGGACG 299 Query 36319 GCGATCCGCTGTTCATGCGCTGCAACCTGTGGCGTGACGCGGCGGAGAACGTCACGGACT 36378 | || ||||| | |||| |||||||| | ||||| ||||||||| |||| | Sbjct 298 GTGAGGGCATGTTCCTCACCTGCTCGGTGTGGCGTCAGGCGGCCGAGAACGTCGCGGAGT 239 Query 36379 CGCTGTCGAAGGGGACTCGGGTCATCGTGCAGGGCCGGCTGAAACAGCGGAGCTACGAGG 36438 | || | || | || ||| |||| ||||| ||||| || ||| | ||||||| Sbjct 238 CCTTGCAGCGCGGCATGCGCGTCGTCGTCCAGGGACGGCTCAAGTCGCGCACCTACGAGA 179 Query 36439 ACAAAGAGGGCGTCACGCGGACCATCGTCGAGCTGGAAGTGGACGAGATCGGTCCGTCCC 36498 | ||||||| | ||| ||| || ||||| | || || || ||| |||| ||| || Sbjct 178 CCCGCGAGGGCGAGAAGCGCACCGTCTTCGAGATCGAGGTCGAGGAGGTCGGGCCGAGCC 119 Query 36499 TGAAGTACGCGACGGCGAACGT 36520 |||||| ||| ||||| || || Sbjct 118 TGAAGTTCGCCACGGCCAAGGT 97 >seq210609 Length=1060 Score = 116 bits (128), Expect = 1e-21 Identities = 205/292 (70%), Gaps = 10/292 (3%) Strand=Plus/Minus Query 13717 ACCGGCGTGTGGACGGCGGCGCAGACGGCACTGAACTTCGCGATGAGCGCCAACCCGATT 13776 ||||| ||| ||| | |||||||| ||||| ||| ||| |||| ||||||||| || Sbjct 939 ACCGGAGTGATGACCGTCGCGCAGACCGCACTCAACCTCGTGATGGCCGCCAACCCCATC 880 Query 13777 GGCGTCGTGATCGCGATTGTGGTC---GCACTGGTCGCGGCAATCGTGCTCGCGTACAGA 13833 | || |||| | | | | || || |||||||| | |||||| ||||| ||| Sbjct 879 ACCCTC---ATCGTGCTGGCGCTCACCGCGCTGGTCGCCGGAATCGTTCTCGCCTACCAG 823 Query 13834 AACAGTGAGACGTTCCGCAATATCGTGCAAGCTGCCTGGCAGGGTATCCAGACGGCGGCG 13893 ||| ||||||||||| || |||||| || |||||| | || ||| ||| |||| | Sbjct 822 AACTCCGAGACGTTCCGGAACATCGTGTCCGCGGCCTGGGACGGCATCAAGATCGCGGTG 763 Query 13894 TCGTGGGCGTGGGACA-ACGTGCTGAAGCCGGTCATAGACGGCTTCATGGCAGGGCT-CG 13951 || ||||| ||||| ||| | ||||| | | | |||| |||||||| ||||| || Sbjct 762 TCCGCGGCGT-GGACAGGAGTGATCAAGCCCGCCGTCGACGCGTTCATGGCCGGGCTGCG 704 Query 13952 GCTGGCTCGGCGACAAGGGCCTGTGGCTTTGGCAGAACGTCATGGTGCCGGC 14003 | | | |||||||| | |||||| ||| | |||| || |||| || Sbjct 703 GTTCG-TCGGCGACGCCGCGACGTGGCTATGGAACAACGCGATCATGCCCGC 653 Score = 84.2 bits (92), Expect = 6e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 14090 TCGGCGACATTGCCGGCAAGGTGGCCGGCGGGATCAAGTCGGCGTTCTCCGGCGTGGTCG 14149 |||||||||| || |||| | | |||||| |||||||||||||||||||| || |||| Sbjct 434 TCGGCGACATCGCAGGCAGCATCGGCGGCGGCATCAAGTCGGCGTTCTCCGGTGTCGTCG 375 Query 14150 ACGTGCTGAAGGCACC 14165 |||| || |||||||| Sbjct 374 ACGTACTCAAGGCACC 359 >seq4597 Length=157418 Score = 89.7 bits (98), Expect = 2e-13 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 25461 CGCGGCGGCTGGTCGCGGGCGTTCCTGGT-GACGAACAACGGCGGACACGTCCACAAGTC 25519 || ||||| ||| | || | |||||| ||| |||| | ||| ||||| ||| ||| Sbjct 76234 CGTGGCGGTTGGACCCGCTTCTACCTGGTCGAC-AACACCAACGGCCACGTGCACTCGTC 76176 Query 25520 GACCCGGTGCGGCACGTGCTACCTCACGACGACGTTCCTGTGGCTGACCGACATGTCCGG 25579 || | ||| |||| |||| || |||| ||| | ||| | |||||| | ||||| Sbjct 76175 TACGAGCTGCAGCACCTGCTTCCCGTCGACCTCGTACTACTGGGTCACCGACCTCTCCGG 76116 Query 25580 CATGGACGAAGCGGCGATCGTGGACGAGGCCGGCGAACGCGCTTGCAC-GTCGTGCTACC 25638 || ||| || | | | || || ||||| ||||| ||||| ||||| ||| |||| || Sbjct 76115 CAGCACCGACGCCGAGGTTGTCGAAGAGGCTGGCGAGCGCGCCTGCACCGTC-TGCTTCC 76057 Query 25639 CGGACGCCCCGGTCGACGTCCTGAAGCGCGCGAGCCG 25675 | ||||||||||||| | ||||| ||| | | ||| Sbjct 76056 CCGACGCCCCGGTCGCCACCCTGACCCGCTCCACCCG 76020 >seq85310 Length=863 Score = 80.6 bits (88), Expect = 8e-11 Identities = 106/145 (73%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 9598 CGGCTGATAACTCCGCTCGGCACCGATATTCCGCTCGCGTCGGTCGACCGGGTCCGCTTC 9657 ||| |||| || | || ||| ||| | || ||| | ||| ||||||| || | ||| Sbjct 546 CGGTTGATCACCCAGCCGGGCGTCGACCTCCCACTCACCTCGATCGACCGCGT--GGTTC 603 Query 9658 --GCCGGCAGGGAGGTCGAAGTCGCCGGCGACGTGTCGCGGTGGCCGCACCCGATCATTC 9715 |||||| | || |||| |||| ||||| ||| ||| |||||||||||||| || | Sbjct 604 ACGCCGGCCGCGACCTCGAGGTCGTGGGCGAAGTGCTGCGCTGGCCGCACCCGATGATCC 663 Query 9716 CCGGCGGCGTGCATCACGTCGAAGC 9740 || ||||||||| ||| |||| || Sbjct 664 CCAACGGCGTGCACCACCTCGAGGC 688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146141554163720