Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_030942.1 Length=55524 Score E Sequences producing significant alignments: (Bits) Value seq235444 221 4e-53 seq54171 215 2e-51 seq208699 120 1e-22 seq153864 87.8 6e-13 seq192587 80.6 9e-11 >seq235444 Length=879 Score = 221 bits (244), Expect = 4e-53 Identities = 224/292 (77%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 20469 CGGTGCGGTGATGGCGTTCCAGGGTGGCGTGCTCTACCGCAAGGACGGCCACGACCACCA 20528 ||| ||||| |||||||||||||| || |||||||||||||||||||| || | Sbjct 7 CGGCGCGGTCATGGCGTTCCAGGGCGGTGTGCTCTACCGCAAGGACGGGCAGCCCGGGTT 66 Query 20529 CGTCGTGAAGGGGCTCATCGGCCAACGGTGGGCGCTCGAAGGATACGAGAAGGGCCCGCT 20588 |||||||||||| |||||||||| || ||||| | ||| ||||||||||||||| || Sbjct 67 CGTCGTGAAGGGCGTCATCGGCCAGCGCTGGGCCCGCGACGGATACGAGAAGGGCGACCT 126 Query 20589 CGGTTGGCCGACGTCGGACGAGATCCCGAACGGGACCGGCGGCAAGTACCAGACATTCGA 20648 ||| ||||| | || ||||||||||| ||||| ||||||||| ||| ||||| Sbjct 127 CGGCTGGCCCATCTCCGACGAGATCCCCAACGGCACCGGCGGCGTCGTGCAGCTCTTCGA 186 Query 20649 GCACGGCGTCCTCGAATGGGACCCGTCTGGCGCGGTGAAGCGGATCGGTGCAGCCGCGCA 20708 |||||| |||||| ||||||| | |||||||| ||| |||| || ||||| Sbjct 187 GCACGGACGCCTCGAGTGGGACCGCACCGGCGCGGTCAAGGAACTCGGCGCCGCCGCCAC 246 Query 20709 GGATCTCACCCTCGTCAACGCGGCTGGCTTCCCGCTGGCCGTCGAAGCAGTC 20760 || | |||| |||||||||| || ||| |||| |||||||||| || ||| Sbjct 247 CGACCACACCATCGTCAACGCCGCCGGCCTCCCTGTGGCCGTCGACGCCGTC 298 >seq54171 Length=260 Score = 215 bits (238), Expect = 2e-51 Identities = 206/262 (79%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 19684 GATCCCGTTTGGCTCCCCGACGTATTGCGAGCGGAAGGTCTGCGCTGCGACATCTATCCG 19743 |||||| | ||||||||||| || |||| || | | || ||||||||||| || Sbjct 1 GATCCCATCTGGCTCCCCGAGGTGCTGCGCGCAGCGCGCCTCACATGCGACATCTACCCC 60 Query 19744 GGCGCGTTCGAGCGCGGGCACGGCGACTTCGGAACGATCTGGGG--TCCATTCATGCATC 19801 ||||| ||| ||||||| |||||||||||||| |||||||||| ||| || || | Sbjct 61 GGCGCATTCCAGCGCGGCCACGGCGACTTCGGGTCGATCTGGGGCATCC--TCGACCACC 118 Query 19802 ACACCGGCTCGTTCGGCGAGACACCGCGGGGCATCGCGCAGCACTCGTCTCTCGGGCTCG 19861 |||||||| ||||||||||| ||||| || ||||| ||||| |||| ||||| || | Sbjct 119 ACACCGGCAGCTTCGGCGAGACGCCGCGCGGTATCGCCGAGCACCCGTCGCTCGGTCTGG 178 Query 19862 CGTCGCAGCTGCACCTCGCCGCGAACGGCGTCGTCACGCTGTGCGGCGTCGGCGTCGCAT 19921 ||||||||||||||||| | |||| || | ||||||||| || ||||| |||| | Sbjct 179 CGTCGCAGCTGCACCTCTCGCCGAAGGGTCGCTACACGCTGTGTGGTGTCGGGATCGCCT 238 Query 19922 GGCACGCCGGCACCGGGTCGTG 19943 |||||||||||||||||||||| Sbjct 239 GGCACGCCGGCACCGGGTCGTG 260 >seq208699 Length=382 Score = 120 bits (132), Expect = 1e-22 Identities = 180/253 (71%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 5702 ACCAATGGCACTGTGGACAGACGTCATCGACCCCGCCACCCTGACCGGGTATGTGCGGCA 5761 |||| ||||||| ||||| |||||||||||||| ||||| ||||||||||| | || Sbjct 5 ACCAGTGGCACTTTGGACTGACGTCATCGACCCGGCCACTCTGACCGGGTACGCCCGCGC 64 Query 5762 GTCGATGGCCGACTACGAAGCATC-CAAGGGCTCGCTATCGGTGTTCCTGCCGAACCGCA 5820 || | | || ||||| | | | |||||||||||| | || ||||||||||| || Sbjct 65 CTCCCTCGAGGAGTACGA-GAAGCGCAAGGGCTCGCTCGCCCAGTACCTGCCGAACCTCA 123 Query 5821 CCGTCCCCGACATCGTCGCGCGGTTCACCGCCGGCCAGTCGGGGCTGCTCGACGCCGCGG 5880 |||| | ||| |||| | |||||| || ||| ||| | || || | | |||||| Sbjct 124 ACGTCGCAGACGTCGTGGTCCGGTTCGTCGTCGGGCAGACCGGACTCGTGCAGGCCGCGA 183 Query 5881 AGTACCGGTCGTACGACGCTGAGGCATCGATCGGCGGGCCGCCCGAGGCGAAGCGCGTCA 5940 ||| ||| ||| |||||| ||| | | ||||| | ||| | | |||||| | Sbjct 184 AGTTCCGTGCGTTCGACGCGGAGCCCGAGGTCGGCAAGGCGCAGGGCGGTCGGCGCGTGA 243 Query 5941 CCCTCGAGCTGCC 5953 | |||||||| || Sbjct 244 CGCTCGAGCTCCC 256 >seq153864 Length=4142 Score = 87.8 bits (96), Expect = 6e-13 Identities = 52/53 (98%), Gaps = 1/53 (2%) Strand=Plus/Plus Query 31105 TGGAGCCGATGACGGGAATCGAACCCGCGTATTCAGCTTGGGAAGCTG-TGTT 31156 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 3035 TGGAGCCGATGACGGGAATCGAACCCGCGTATTCAGCTTGGGAAGCTGATGTT 3087 >seq192587 Length=560 Score = 80.6 bits (88), Expect = 9e-11 Identities = 101/132 (77%), Gaps = 9/132 (7%) Strand=Plus/Plus Query 27510 AACTGGCGGTTCGAGCGTGTCG-GCACCGACTACTTCGCCGAAGGGCTCCCACCCTCACC 27568 |||||||||||| || || | ||| |||||||||||| || ||| | |||| || | Sbjct 218 AACTGGCGGTTCCTGC-TGCAGAGCAACGACTACTTCGC-GATCGGCGACGACCC-CAGC 274 Query 27569 AC--TGCAGCACTACTGGTCGCTGTCCATCGAGGAGCAGTTCTACTTCGTGTGGC---CG 27623 | | | ||||| |||||||||||| |||||||||||||||||| |||| | | || Sbjct 275 CCGTTCCTGCACTTCTGGTCGCTGTCGATCGAGGAGCAGTTCTACGTCGTCTTCCCCGCG 334 Query 27624 ATTCTGCTGCTC 27635 | ||||||||| Sbjct 335 GTGCTGCTGCTC 346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176970979361156