Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26]
277,083 sequences; 279,264,790 total letters
Query= NC_030942.1
Length=55524
Score E
Sequences producing significant alignments: (Bits) Value
seq235444 221 4e-53
seq54171 215 2e-51
seq208699 120 1e-22
seq153864 87.8 6e-13
seq192587 80.6 9e-11
>seq235444
Length=879
Score = 221 bits (244), Expect = 4e-53
Identities = 224/292 (77%), Gaps = 0/292 (0%)
Strand=Plus/Plus
Query 20469 CGGTGCGGTGATGGCGTTCCAGGGTGGCGTGCTCTACCGCAAGGACGGCCACGACCACCA 20528
||| ||||| |||||||||||||| || |||||||||||||||||||| || |
Sbjct 7 CGGCGCGGTCATGGCGTTCCAGGGCGGTGTGCTCTACCGCAAGGACGGGCAGCCCGGGTT 66
Query 20529 CGTCGTGAAGGGGCTCATCGGCCAACGGTGGGCGCTCGAAGGATACGAGAAGGGCCCGCT 20588
|||||||||||| |||||||||| || ||||| | ||| ||||||||||||||| ||
Sbjct 67 CGTCGTGAAGGGCGTCATCGGCCAGCGCTGGGCCCGCGACGGATACGAGAAGGGCGACCT 126
Query 20589 CGGTTGGCCGACGTCGGACGAGATCCCGAACGGGACCGGCGGCAAGTACCAGACATTCGA 20648
||| ||||| | || ||||||||||| ||||| ||||||||| ||| |||||
Sbjct 127 CGGCTGGCCCATCTCCGACGAGATCCCCAACGGCACCGGCGGCGTCGTGCAGCTCTTCGA 186
Query 20649 GCACGGCGTCCTCGAATGGGACCCGTCTGGCGCGGTGAAGCGGATCGGTGCAGCCGCGCA 20708
|||||| |||||| ||||||| | |||||||| ||| |||| || |||||
Sbjct 187 GCACGGACGCCTCGAGTGGGACCGCACCGGCGCGGTCAAGGAACTCGGCGCCGCCGCCAC 246
Query 20709 GGATCTCACCCTCGTCAACGCGGCTGGCTTCCCGCTGGCCGTCGAAGCAGTC 20760
|| | |||| |||||||||| || ||| |||| |||||||||| || |||
Sbjct 247 CGACCACACCATCGTCAACGCCGCCGGCCTCCCTGTGGCCGTCGACGCCGTC 298
>seq54171
Length=260
Score = 215 bits (238), Expect = 2e-51
Identities = 206/262 (79%), Gaps = 4/262 (2%)
Strand=Plus/Plus
Query 19684 GATCCCGTTTGGCTCCCCGACGTATTGCGAGCGGAAGGTCTGCGCTGCGACATCTATCCG 19743
|||||| | ||||||||||| || |||| || | | || ||||||||||| ||
Sbjct 1 GATCCCATCTGGCTCCCCGAGGTGCTGCGCGCAGCGCGCCTCACATGCGACATCTACCCC 60
Query 19744 GGCGCGTTCGAGCGCGGGCACGGCGACTTCGGAACGATCTGGGG--TCCATTCATGCATC 19801
||||| ||| ||||||| |||||||||||||| |||||||||| ||| || || |
Sbjct 61 GGCGCATTCCAGCGCGGCCACGGCGACTTCGGGTCGATCTGGGGCATCC--TCGACCACC 118
Query 19802 ACACCGGCTCGTTCGGCGAGACACCGCGGGGCATCGCGCAGCACTCGTCTCTCGGGCTCG 19861
|||||||| ||||||||||| ||||| || ||||| ||||| |||| ||||| || |
Sbjct 119 ACACCGGCAGCTTCGGCGAGACGCCGCGCGGTATCGCCGAGCACCCGTCGCTCGGTCTGG 178
Query 19862 CGTCGCAGCTGCACCTCGCCGCGAACGGCGTCGTCACGCTGTGCGGCGTCGGCGTCGCAT 19921
||||||||||||||||| | |||| || | ||||||||| || ||||| |||| |
Sbjct 179 CGTCGCAGCTGCACCTCTCGCCGAAGGGTCGCTACACGCTGTGTGGTGTCGGGATCGCCT 238
Query 19922 GGCACGCCGGCACCGGGTCGTG 19943
||||||||||||||||||||||
Sbjct 239 GGCACGCCGGCACCGGGTCGTG 260
>seq208699
Length=382
Score = 120 bits (132), Expect = 1e-22
Identities = 180/253 (71%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 5702 ACCAATGGCACTGTGGACAGACGTCATCGACCCCGCCACCCTGACCGGGTATGTGCGGCA 5761
|||| ||||||| ||||| |||||||||||||| ||||| ||||||||||| | ||
Sbjct 5 ACCAGTGGCACTTTGGACTGACGTCATCGACCCGGCCACTCTGACCGGGTACGCCCGCGC 64
Query 5762 GTCGATGGCCGACTACGAAGCATC-CAAGGGCTCGCTATCGGTGTTCCTGCCGAACCGCA 5820
|| | | || ||||| | | | |||||||||||| | || ||||||||||| ||
Sbjct 65 CTCCCTCGAGGAGTACGA-GAAGCGCAAGGGCTCGCTCGCCCAGTACCTGCCGAACCTCA 123
Query 5821 CCGTCCCCGACATCGTCGCGCGGTTCACCGCCGGCCAGTCGGGGCTGCTCGACGCCGCGG 5880
|||| | ||| |||| | |||||| || ||| ||| | || || | | ||||||
Sbjct 124 ACGTCGCAGACGTCGTGGTCCGGTTCGTCGTCGGGCAGACCGGACTCGTGCAGGCCGCGA 183
Query 5881 AGTACCGGTCGTACGACGCTGAGGCATCGATCGGCGGGCCGCCCGAGGCGAAGCGCGTCA 5940
||| ||| ||| |||||| ||| | | ||||| | ||| | | |||||| |
Sbjct 184 AGTTCCGTGCGTTCGACGCGGAGCCCGAGGTCGGCAAGGCGCAGGGCGGTCGGCGCGTGA 243
Query 5941 CCCTCGAGCTGCC 5953
| |||||||| ||
Sbjct 244 CGCTCGAGCTCCC 256
>seq153864
Length=4142
Score = 87.8 bits (96), Expect = 6e-13
Identities = 52/53 (98%), Gaps = 1/53 (2%)
Strand=Plus/Plus
Query 31105 TGGAGCCGATGACGGGAATCGAACCCGCGTATTCAGCTTGGGAAGCTG-TGTT 31156
|||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3035 TGGAGCCGATGACGGGAATCGAACCCGCGTATTCAGCTTGGGAAGCTGATGTT 3087
>seq192587
Length=560
Score = 80.6 bits (88), Expect = 9e-11
Identities = 101/132 (77%), Gaps = 9/132 (7%)
Strand=Plus/Plus
Query 27510 AACTGGCGGTTCGAGCGTGTCG-GCACCGACTACTTCGCCGAAGGGCTCCCACCCTCACC 27568
|||||||||||| || || | ||| |||||||||||| || ||| | |||| || |
Sbjct 218 AACTGGCGGTTCCTGC-TGCAGAGCAACGACTACTTCGC-GATCGGCGACGACCC-CAGC 274
Query 27569 AC--TGCAGCACTACTGGTCGCTGTCCATCGAGGAGCAGTTCTACTTCGTGTGGC---CG 27623
| | | ||||| |||||||||||| |||||||||||||||||| |||| | | ||
Sbjct 275 CCGTTCCTGCACTTCTGGTCGCTGTCGATCGAGGAGCAGTTCTACGTCGTCTTCCCCGCG 334
Query 27624 ATTCTGCTGCTC 27635
| |||||||||
Sbjct 335 GTGCTGCTGCTC 346
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 176970979361156
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |