Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq13366 601 5e-167 seq7533 107 3e-18 seq56708 96.9 5e-15 >seq13366 Length=6323 Score = 601 bits (666), Expect = 5e-167 Identities = 1039/1497 (69%), Gaps = 17/1497 (1%) Strand=Plus/Plus Query 76762 TTATTTTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGAT 76821 |||||||| || || | ||||||||||| | | | ||| |||||||| |||| | Sbjct 494 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 553 Query 76822 AGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGG 76881 ||||||| || ||||||| |||| |||| ||| |||||| || || ||||| Sbjct 554 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 613 Query 76882 AATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTC 76941 ||| |||| | || | ||| || || | || |||||||| || || |||||||||| Sbjct 614 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 673 Query 76942 TATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTT 77001 ||||||| ||||| | ||| || || | | ||| ||||| | |||||| | | | Sbjct 674 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 733 Query 77002 GTTTGATATCATCTGGAAGGTTTGTATTTT---GAATGGAACCACCATCTGATATAATTG 77058 | | || || | |||| ||| | ||| | || || ||| | ||||||| Sbjct 734 CTCTTATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATAA 793 Query 77059 TATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGAT 77118 ||| || ||||| |||| |||||| | | || ||| | | || |||||| | | Sbjct 794 GATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGT 853 Query 77119 TAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTT 77178 | |||| ||||||||||||| || ||||| | ||||||||| ||| | |||| Sbjct 854 TCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGTT 913 Query 77179 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCA 77238 | | ||||||| |||| || | |||||| |||||||| ||||| |||||||| || | || Sbjct 914 CAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATCA 973 Query 77239 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 77298 ||| | ||| | | ||||||| || || || ||||| || ||| ||||||| Sbjct 974 ATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCCAAA 1033 Query 77299 GATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATC 77358 | |||| ||| ||||| | ||| || || || || || | || || | || Sbjct 1034 GGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGC-TGGACTC 1092 Query 77359 CATT-ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 | || |||||| || | |||||| ||||||||| ||||||||| ||||| ||||| Sbjct 1093 CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAATGCA 1152 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 || |||||||||||||| || || | | ||||||| | ||||| ||| || | Sbjct 1153 CCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCGTAA 1212 Query 77478 GGATAATGTAAAAGA-ATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCT 77536 | ||| | | | | | ||| |||||||| | |||||||| ||||||||||||||||| Sbjct 1213 G-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGTCT 1271 Query 77537 ATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTT 77596 ||||||| |||| ||| |||| || || || | ||||||| |||||| || |||| ||| Sbjct 1272 ATGTCTCATATTTGAAGTTTTTGCCTCAGGGACAGGATAAAAATTAACATCAATAACTTT 1331 Query 77597 ATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCC 77656 || | |||| | || | || | || |||| ||| ||||| |||||| Sbjct 1332 GTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCTGTT 1391 Query 77657 ATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGC 77716 || | |||||||||||| | ||||| || || || || || ||||| || |||| | Sbjct 1392 ATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCTTC 1451 Query 77717 GTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTG 77776 | ||||| | | ||| || || ||||| |||||||| |||||||| ||||||| Sbjct 1452 TGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGATTTTT 1511 Query 77777 TTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAAT 77836 ||| || |||||| | || || | |||||||| | || | || || || || || | Sbjct 1512 TTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCTCCAC 1571 Query 77837 CTGTGATTCGATAATAGATTTCCAGACGACTCT--AGCTTTTATCATAGATTTGTA--TC 77892 || | ||| ||||| || ||||| | ||||| |||| | | | | ||| || || Sbjct 1572 TTGGGCTTCTATAATTGACTTCCATA--ACTCTTGAGCTCTGAC--TTGTTTTATAAATC 1627 Query 77893 GCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACA-TCATCC 77951 | | ||| |||||||| | |||||| ||||||||| ||||| || || ||| | Sbjct 1628 GTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCA-AAGCAGTCAGCG 1686 Query 77952 AATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTC 78011 | ||||| || |||| || ||||| | ||| | |||| | | |||| |||| Sbjct 1687 AGGCCAGGACAATCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTTTTC 1746 Query 78012 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTT 78071 ||||| ||||| |||||||||| |||| ||| || |||| | ||| |||||| || Sbjct 1747 ATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTA 1806 Query 78072 CCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 78131 ||||| ||||| || | ||| | || || | ||||| | |||||| || |||| ||| Sbjct 1807 CCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCAAGGCTCTAAATAA 1866 Query 78132 ATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTA 78191 ||||| | | || || ||||| || || || ||||||| ||||||||| || || ||| Sbjct 1867 ATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCAGTATTGTTA 1926 Query 78192 TAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 || |||||||||||||| | | ||| || || ||||| || |||| || ||| Sbjct 1927 TACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATGTAA 1983 Score = 114 bits (126), Expect = 2e-20 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 78542 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 |||||| ||||| |||||||| |||||| ||||||||||||| ||||||||||||||||| Sbjct 2609 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 2668 Query 78602 TGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTT 78652 | ||| ||||| || |||| ||| |||| | || ||| || |||| ||| Sbjct 2669 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 2719 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 78753 ttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCA 78812 || || || || || |||| ||| |||| |||||||| ||||| | ||| |||||||| Sbjct 3380 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCC 3439 Query 78813 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTT 78872 ||||| | ||| || ||| |||||||||||||| |||| | |||| | ||| |||| Sbjct 3440 GGATGATCTGTGGTCTTAGTAGCTGCTATTTCTGCAGCTAGATTATCAAGCTCAGCAGTT 3499 Query 78873 GTGACCCCATTATATA 78888 || || ||| ||||| Sbjct 3500 GTTACACCAGAATATA 3515 >seq7533 Length=2710 Score = 107 bits (118), Expect = 3e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 || |||| ||||||||||| || |||||||| ||||| || |||||||||||||| | | Sbjct 680 TTAGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 621 Query 48687 CATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 |||||||| |||||||||||||| |||||||| | | ||||||| Sbjct 620 CATATATCTGGATATTGGATTGGGAATATAACAAAACGTCTAGGATTTT 572 Score = 100 bits (110), Expect = 4e-16 Identities = 183/262 (70%), Gaps = 11/262 (4%) Strand=Plus/Minus Query 48123 AAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAAT 48182 ||| | ||||| ||| || |||||| || | | |||| |||| ||| ||| | | Sbjct 1895 AAAAGCTTAAA---TAAGAATACAAAATTACGAAACATACCT-CATCCCTAGAAATAAGT 1840 Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 || ||| || || | |||||||| || || |||||||| | ||||||||||| || Sbjct 1839 TCATTACTGAAAGTCAATCCGGGCATCAGACCTCGTTTTTTCAACCAAAATATTGAAGC- 1781 Query 48243 AAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC--- 48298 |||| | || || || ||||| || || || || ||||| || | | | ||||| Sbjct 1780 AAAGCTGCCTGAGAAAAATATTCCCTCAACTGCTGCAAAAGCAATTATACGTTCTCCAAA 1721 Query 48299 -GTAACTGGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAG 48357 ||| ||| ||| | || |||||| || ||||| || ||||||||||| ||||| | Sbjct 1720 TGTAGCTGTCTT-GCTGCCGATCCACTGTAACGCCCAGTCTGCCTTCTTCTTAACACATG 1662 Query 48358 GCATTGTTTCTATAGCATTAAA 48379 | | ||||| || ||||| || Sbjct 1661 GTAGAGTTTCAATTGCATTGAA 1640 >seq56708 Length=5257 Score = 96.9 bits (106), Expect = 5e-15 Identities = 242/367 (66%), Gaps = 3/367 (1%) Strand=Plus/Plus Query 170967 TTATGATTCCTATAAATCCTATGTTAGCAGAATCATGTGATTCTGTTAACAAGGCATTTA 171026 |||||| ||| || || |||||||||||| | || | || ||| | | ||| | | Sbjct 2030 TTATGACTCCAGTATTACCGATGTTAGCAGAAGCTTGCAAGTCAGTTGAAATGGCTATGA 2089 Query 171027 AAAAATTTCCATCTGGAATGTTTGCAGAAGTAAAATATGATGGTGAACGAGTCCAAGTTC 171086 |||||| |||| ||| |||||| | || ||||||||||||| ||||| || ||||| | Sbjct 2090 AAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGTCC 2149 Query 171087 ATAAAAACAATAATAATTTTGCCTTCTTTAGCAGAAACATGAAACCAGTTTTACCACATA 171146 ||||||| ||| | || | ||| | | | | |||||||| | | || | Sbjct 2150 ATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCACA 2209 Query 171147 AAGTTGATTATCTCAAGGAATACCTTCCTAAAGCATTTAAAAAAGCTACCTCTATTATCT 171206 ||||| | || | || || || | || ||||||||| |||| | | |||| Sbjct 2210 AAGTTAGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGAGATGATTTGATCT 2269 Query 171207 TGGATTCCGAAATTGTTCTAGTTGATGAACATAATG---TTCCACTTCCGTTTGGAAGTC 171263 ||||| | ||| | || | ||||||| ||| || ||| | || || || | Sbjct 2270 TGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGGTACAT 2329 Query 171264 TAGGAATACACAAAAAGAAAGAGTACAAAAATGCTAATATGTGTTTGTTCGTCTTTGATT 171323 |||| || |||||| | ||| | ||| ||||| | | || || | | ||||||| Sbjct 2330 TAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTGATT 2389 Query 171324 GTTTATA 171330 | ||||| Sbjct 2390 GCTTATA 2396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692262788561120