Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031061.1 Length=53431 Score E Sequences producing significant alignments: (Bits) Value seq157980 304 4e-78 seq167236 230 8e-56 seq84561 179 1e-40 seq219746 152 2e-32 seq6603 86.0 2e-12 >seq157980 Length=2738 Score = 304 bits (336), Expect = 4e-78 Identities = 527/761 (69%), Gaps = 24/761 (3%) Strand=Plus/Minus Query 39411 GGCATCCACGTCGTCGCCGCGACGACCTCCGAGAAGGGCCTCGAGGTCGAGGTTGTCGAC 39470 ||| ||||||| ||||||| |||||| ||| ||| || || ||| || |||||| Sbjct 1711 GGCGTCCACGTGTTCGCCGCCACGACCAAGGAGCGGGGTCTGCAGACCGACGTCGTCGAC 1652 Query 39471 CTCCGCGAGTTCATCCCCGGCGTGACGCGGTCCGCCGAGTCGGGCACCCGGCTCGTCACC 39530 ||||| ||| | | ||||| || | ||| ||||| | ||||| || |||||||| Sbjct 1651 CTCCGTCAGTACGTGCCCGGGCTGCTGTCGTCGCCCGAGGCCGGCACTCGCATCGTCACC 1592 Query 39531 GATGTCCCGTCGTTCCTCGCCGAACTGGACCGGTACAGCATCGATCCGGACTTCTCGACC 39590 || ||| ||||||| || || || ||||| |||| ||||| | | ||||| Sbjct 1591 GACGTCGTGTCGTTCGAGGCTGAGCTCGACCGCTACAAGCTCGATGAGACCGCGTCGACG 1532 Query 39591 CTGTGGGGTGACGAGACGAAGGGCCGCGTCGAAGCTGTCTACAACGATCACGCGAACG-- 39648 |||||||||||||||| ||||||||||| | || |||||||||| |||| ||||| Sbjct 1531 CTGTGGGGTGACGAGAACAAGGGCCGCGTGGTCGCGATCTACAACGACCACGTGAACGCC 1472 Query 39649 -------------ACGGCCCCGGACTCCGCGACAACCGCCTGCGTCTGGAGCTGCGCGCC 39695 |||| | ||| | |||||||||||| |||| ||| |||| || || Sbjct 1471 GCCGACGGTGTCGACGGGCACGGTCACCGCGACAACCGTCTGCAGCTGCAGCTCCGTCCC 1412 Query 39696 GACCAGGACTGGACCGCCTGGCACCAGCTGTCCGGCCAGTACCTCCGGCAGGAAGAGTTC 39755 ||| |||||||| | ||||||||| || | ||||| |||| ||| |||| |||||| Sbjct 1411 GACGAGGACTGGGCGGCCTGGCACAAGATTTCCGGGAGGTACATCCCTCAGGCGGAGTTC 1352 Query 39756 GGCGACCGCGTCGAAGAGCTGCTCCACACCGTCGTCGAGCCGGCGCAGGCCGACCTGATG 39815 |||||| | |||| || || || |||||||| ||| || | ||||||||||| | Sbjct 1351 GGCGACATCATCGAGGACCTCCTGCACACCGTGGTCTCACCCGACCAGGCCGACCTCGTC 1292 Query 39816 GAGGTCATCGACTCCATCCGCGCCACCAGCAAGGGCAGCTTCGAGTCGAAGATCTCCCGC 39875 ||||||||||||||||||||| |||| |||| || |||||||| | ||| |||| Sbjct 1291 GAGGTCATCGACTCCATCCGCACCACGAGCAGCGGGGTGTTCGAGTCCACCATCCGCCGC 1232 Query 39876 GCCGACGGCGGCCAACAGCTCGAGTACAAGGAGGACGTCTCCACCACCGCGGG--GAAGT 39933 | || ||| ||| |||||||| | |||||||| ||||||| || || ||| | Sbjct 1231 GACGTCGGTACCCAGGCGCTCGAGTTCCGCGAGGACGTGTCCACCAGTGCCGGACGAACT 1172 Query 39934 CCGGTCAGCTCGAGGT-CCCGAAGACCGTCACCCTCGCGATCCGCCCCTGGGAAGGGCTC 39992 | || |||||||| || || | | ||||| |||| || | || || | Sbjct 1171 -CAATC-CCTCGAGGTGCCTCGCGAGC-TGGTGCTCGCACTCCGGCCGTACGAGGGCATG 1115 Query 39993 GACACCTACAAAGTGGAGGGCTGGTTCCGGCTGCGCGTGCAGAACGGACAACTGTCGCTC 40052 || |||||| | || || |||||||| || || || | ||| |||| ||| Sbjct 1114 GAGACCTACGAGGTCCGGGCGTGGTTCCGCCTCAAGGTCCACCAGGGATCACTGCTCCTC 1055 Query 40053 GCGATCAAGCTGAAGCCCACCCGCTCCATCCTCCGCGCCGCATGGGCCGACGTCATCGAA 40112 || | ||||| || |||||| || |||| ||| || ||| ||||| || ||| Sbjct 1054 GCCGTGAAGCTCCGACCGACCCGCACCGTCCTGCGCCAGGCGTGGTCCGACATCGTCGCC 995 Query 40113 CAAATCGAGAAGCACCTCGACGGAAAGCCCGTCCTGGCAAC 40153 | |||||| || || | | ||||| |||||||| || Sbjct 994 GACATCGAG--GC-CCACACCACCAAGCCGGTCCTGGCCAC 957 >seq167236 Length=849 Score = 230 bits (254), Expect = 8e-56 Identities = 317/438 (72%), Gaps = 18/438 (4%) Strand=Plus/Plus Query 43834 CCCAATGACCGACTACCCCGCCCGCATGACGCTGCGGCCGATCGAGCGCTGGCCCGGGAA 43893 |||| ||| ||||||||| ||| |||||| ||||| |||||||| || ||||| Sbjct 388 CCCAGTGAACGACTACCCGGCCAACATGACCCTGCGCCCGATCGACCGGTGGCCACACTC 447 Query 43894 GCTGACCGCGAACCGTGTCAG-CTCGCA--GTTCTCGGCGCCGTGGCGGGCGACCCTCGA 43950 | |||| | ||| || |||||| |||| | ||| | | ||||||||||| Sbjct 448 CCACACCGGCAGCCG---CACTCTCGCACCGTTCACCGCGACACTCGGCGCGACCCTCGA 504 Query 43951 CCTACTCGACCGCGAACTCTGGCACCTCGGTCCGGCGGGACG--CAACGCG-CCTGCG-- 44005 || ||| ||||||| || | || ||| ||| | | || || ||| |||||| Sbjct 505 ACTCCTCAACCGCGAGCTGCGCCAACTCAACCCGTCCGCACTGTCACGGCGGCCTGCGAC 564 Query 44006 ----GTGCTGCAGATCGCGATGCGAGAGCAGGACTTCCG---GCTCGACGGGATGCCGCG 44058 || |||||||||||| |||| ||| | |||||||| | |||||| | ||| Sbjct 565 CGCGGTCCTGCAGATCGCGCTGCGTGAGAACGACTTCCGCAAGAGCGACGGCCTCCCGAA 624 Query 44059 GGCGAACGCCCGCCCCGAGCACCCGGGCGTGATCCTCGCGATCGAGTCGACCAAGGGGCC 44118 ||| ||||| | | |||| ||||| || |||||||||||||||||||||| | || || Sbjct 625 GGCCAACGCGCACGCCGACCACCCCGGGGTGATCCTCGCGATCGAGTCGAAACACGGCCC 684 Query 44119 GCTGTCGTTCCCCTGCGACCGGTTCGTGACGTGGCAGGACAACCTGCGCGCGATCGCGCT 44178 ||||||| ||| || ||| |||| |||||||||||||| ||||||||||| || Sbjct 685 CCTGTCGTACCCGTGTGACAAGTTCACCCGCTGGCAGGACAACCTCCGCGCGATCGCACT 744 Query 44179 ATCCCTCGAGGCGCTCCGCAAGATCGATCGCTACGGCATCACCCCGAACGCTGAGCAGTA 44238 ||||||||||| ||||||||| |||| || |||||| ||||| | || ||||||| Sbjct 745 GTCCCTCGAGGCACTCCGCAAGGTCGACCGGTACGGCGTCACCGACACCGGCCAGCAGTA 804 Query 44239 CACCGGGTGGAAACAGCT 44256 |||||| ||| ||| || Sbjct 805 CACCGGATGGGCACAACT 822 >seq84561 Length=1800 Score = 179 bits (198), Expect = 1e-40 Identities = 217/290 (75%), Gaps = 18/290 (6%) Strand=Plus/Plus Query 51597 CCGTGACATGTCACACTGGTGCCAGTGACACACGTGTGTCCACAACCCTCGGCACCTAC- 51655 ||||||||||||||||||||| ||| |||||||||||||||| | |||| | ||| | Sbjct 648 CCGTGACATGTCACACTGGTGTCAGCGACACACGTGTGTCCAGA--CCTCCGAACCCAGC 705 Query 51656 -----TCAGGTGGCGGGGGTTTCGTCATTCCGGAGGCGCATCACATGCCCCGAGAAGTCC 51710 || ||| ||||||||||||| || ||||||||| ||| | ||||| | Sbjct 706 CGCCATCGGGTC-CGGGGGTTTCGTCGTTTCGGAGGCGCG----ATGAGC---GAAGTAC 757 Query 51711 CCACCCCCGACGGCATCGACTCCCTTATCACCACCACCGAAGCCGCCACCCTCTGCGGAG 51770 ||| |||||||||||| |||| || |||||||| |||| |||||| | ||| | | Sbjct 758 TCACGCCCGACGGCATCCACTCGCTGATCACCACGGCCGAGGCCGCCCAGCACTGTCGGG 817 Query 51771 TGTCCACCGCCACCGTGCGGAAATGGGTGCAGCGCAACAAGCTCGAACCGTCCGGCCTCG 51830 | ||| |||||| | || || |||||||||||| ||||| ||| || |||| || Sbjct 818 TATCCGAGGCCACCATCCGCAAGTGGGTGCAGCGCGGGAAGCTGACACCATCGGGCCGCG 877 Query 51831 A-CGACAACGGCCGCAACCTGTTCCGGCTGATCGACGTCGCCAAGGCAGA 51879 | | ||| | | |||||||||||||| ||| |||| || |||||||| || Sbjct 878 ACCCACAGC-GTCGCAACCTGTTCCGTCTGCTCGATGTGGCCAAGGCCGA 926 >seq219746 Length=1062 Score = 152 bits (168), Expect = 2e-32 Identities = 229/321 (71%), Gaps = 6/321 (2%) Strand=Plus/Plus Query 44944 GTGTACGAATCACTCGGTGGCGAAGGGCCGCAAGCGGGTTGGCTCACAGCCGGACCTCTT 45003 ||| || |||||||||| || ||||| |||||| | | | | || |||| | Sbjct 24 GTGCACCCATCACTCGGTCGCCCAGGGCATCAAGCGCGCCGACAAGCGCCCCGACCCCAA 83 Query 45004 CGGCGAGATCCTTCCAGACGCGGCGTCGGAGCGGTCCCGCGCGACCATGTGGGACGTCCC 45063 ||| ||| | | || |||| || | || || || || ||||| |||||||||||| Sbjct 84 CGGGGAGGTGTTGCCCGACGACGCCGCCGAACGCTCGCGGGCGACGATGTGGGACGTCGT 143 Query 45064 GCGGTTCGCCGAGGTCCACCACTACCGCGCCGTGATCGTCGAGAACGTTGTCGACGCGTT 45123 |||||||||||| |||||| ||||| | | ||||||| ||||||||||||| || Sbjct 144 CCGGTTCGCCGAGTACCACCAGTACCGATCAATCGTCGTCGAAAACGTTGTCGACGTGTA 203 Query 45124 TCACTGG--GTTCCGTTC-CGCGCGTGGCTGATGGCGATGGACTGCCTCGGCTACGACCA 45180 | |||| ||| |||| ||| ||||||| |||| |||| ||| |||||| |||| Sbjct 204 TTTCTGGCCGTT--GTTCGCGC-CGTGGCTCGCCGCGACGGACGCCCTGGGCTACAACCA 260 Query 45181 CCACATCGTCATGCTCAACTCGATGCACGCCCAAGCGTTCGGTCCCGGGGCGCCGCAGTC 45240 | | ||||| |||||||||||||||||| || |||||||| ||| || || || Sbjct 261 CGAGATCGTGTGGCTCAACTCGATGCACGCGCAGCTGTTCGGTCAGCCGGCCCCTCAATC 320 Query 45241 TCGCGATCGGATGTACGTCGT 45261 | || |||| || ||||| Sbjct 321 AAGGGACAGGATCTATGTCGT 341 Score = 111 bits (122), Expect = 5e-20 Identities = 155/212 (73%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 45367 GCCCGGCAGC-TC-GTGGGGCCGGTACCGCGCCCAATACGTCTACCGGTGCCCGAACGTC 45424 |||||| ||| || ||||||||| ||||||||||| ||| | | |||||||||| | Sbjct 425 GCCCGG-AGCGTCAGTGGGGCCGCTACCGCGCCCAGTACACGTTCTCCTGCCCGAACGGC 483 Query 45425 CGCTGC-CGAAACGCGATCGTCGAACCGCTGTACCGTCCGGCCGCCGACATCATCGACTG 45483 ||| || || | || ||||| | || || ||||| |||||||||||||| Sbjct 484 TCATGCGCG----GCCACAGTGGAACCCGACTGGCGACCCGCCGCAGACATCATCGACTG 539 Query 45484 GACCCTTGAAGGCCAGCGAATCGGCGACCGCGCGAAGCCGCTCGCCGCGAAGACGATGGC 45543 | | || ||| || ||||| |||||| ||||| |||| |||||| ||| | Sbjct 540 GTCGCTGCCCGGCACCCGCATCGGTGACCGCAAACGCCCGCTGGCCGAGAAGACCATGAC 599 Query 45544 GCGCATCCAGGCCGGGATCGACCGCTACTGGG 45575 || |||||||||||||||||||||||||||| Sbjct 600 CCGTATCCAGGCCGGGATCGACCGCTACTGGG 631 >seq6603 Length=23608 Score = 86.0 bits (94), Expect = 2e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 14219 CGCCTCCGGCGGTGTCATGCCCGGCTACACCCCGGGCCGCGACGTGCACCACTTCGCATC 14278 |||| | || ||||| |||| |||||| |||| ||| |||| ||| ||||| || Sbjct 5996 CGCCGCTGGTGGTGTGCTGCCGGGCTACTCCCCTGGCTTCGACAACCACACCTTCGTCTC 5937 Query 14279 ACCGACCGGCGGCAATCTCGCGCTGTCGGGTGGCGAGGCGATCATGCGCCCGGAGTGGAC 14338 || || || ||| || ||||| |||||||||||||||||||||||||||||||| Sbjct 5936 CCCCACTGGTGGCGTGCTGCACCTGTCCGGTGGCGAGGCGATCATGCGCCCGGAGTGGAC 5877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170295416880478