Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031097.1 Length=52077 Score E Sequences producing significant alignments: (Bits) Value seq157980 325 1e-84 seq219746 208 3e-49 seq84561 165 3e-36 >seq157980 Length=2738 Score = 325 bits (360), Expect = 1e-84 Identities = 795/1187 (67%), Gaps = 62/1187 (5%) Strand=Plus/Minus Query 37640 TCATGCAGCACGCAAAGGGCAGAGCGCACACCGAGGCGTCGAAGAAGCTCGCCGAGGTCG 37699 |||| |||||||| || || | |||||| ||||||||||| || ||||| || Sbjct 2124 TCATCCAGCACGCGAAAGGTCGCGCGCACGCCGAGGCGTCGCGTCGCCTGACCGAGCTCA 2065 Query 37700 TCGAGGCCGTCATGGAGACCGG-GAAACCGGG-CTCGATCACGGTCAAGCTCACCATCTC 37757 || || ||| || ||| | |||| ||| ||||||| ||||||| ||||| Sbjct 2064 TCACCGCGGTCCGTGACCTCGGCGGGTCCGGAACTC--TCACGGTGAAGCTCAAGATCTC 2007 Query 37758 CCGCGACAAGGACCTCGCCAGCGTCGTGAAGATCGCCGACCAGGTCGCCGCGAAGATCCC 37817 |||||||||| || || || ||| ||| ||| ||| || || | | || Sbjct 2006 CCGCGACAAGAACGACGACATGGTC---AAGGTCGAGGACACCATCACCTCCTCGGCGCC 1950 Query 37818 GACCGAGCCGCGCCGCTCGATGTGGTTCCCCGACGACGACGGCCAACTCCACCGCAACGA 37877 | | || ||||| ||| |||||||| |||||||||||||| | | ||||||||| Sbjct 1949 GCGCCAGGTCCGCCGATCGCTGTGGTTCGCCGACGACGACGGCAAGTTGAGCCGCAACGA 1890 Query 37878 CCCCAGACAAACC----TCCCTCTT--CGAAGACGGACCCGTCGAGAAGAT-CCAAGCCC 37930 ||| |||| | |||| | ||| | || ||| | || || || | ||| Sbjct 1889 TCCCCGACAGCTCGAGTTCCCCCCGGCCGACGCCGACGCCGACAAGTAGCCACCCACCCC 1830 Query 37931 CGGAAGGCAACTGACCCATGACCGAC--AACTTCAACGGCCAC-CTCG------TCCAGG 37981 | ||| | ||| | | || ||| | | | |||| |||| ||||| Sbjct 1829 CACCCCGCACC--ACCTTT--CGGAAGGAACCACCATGACCACGCTCGACGAAATCCAGT 1774 Query 37982 ACGACGAGCCGCAGAAGCTCTTCCTGCT-GAC--CACCGAGGGCGTACCCGGAATTCAGC 38038 |||||||| | ||||| ||| || || || | || | | | ||| ||||||| Sbjct 1773 ACGACGAGACCCAGAAACTCGCGCTCCTCGAAGGCCCCAACGCAGCCAACGGCATTCAGC 1714 Query 38039 CGGGCGTCGGGGTCTTCGCGGCCACGACCAAGGACAAGGGCCTCGAGGTCGAGACTGTCG 38098 | |||||| || ||||| |||||||||||||| ||| || || ||| |||| Sbjct 1713 CCGGCGTCCACGTGTTCGCCGCCACGACCAAGGAGCGGGGTCTGCAGACCGACGTCGTCG 1654 Query 38099 ACCTCCGCGAGTTCATCCCTGGCGTGACCGCGTCGGCCGAGGCCGGTACCCGCCTCGTCA 38158 ||||||| ||| | | || || || ||||| |||||||||| || ||| |||||| Sbjct 1653 ACCTCCGTCAGTACGTGCCCGGGCTGCTGTCGTCGCCCGAGGCCGGCACTCGCATCGTCA 1594 Query 38159 CCGACGTGCCGTCGTTCCTCGCCGAACTCGTCCGTTACAGCATCGAT----CCCCAATTC 38214 ||||||| ||||||| || || |||| ||| |||| ||||| || | Sbjct 1593 CCGACGTCGTGTCGTTCGAGGCTGAGCTCGACCGCTACAAGCTCGATGAGACCGCG---- 1538 Query 38215 TCGACGCTGTGGGGTGACGAGACTAAGGGCCGCGTCGAAGCCATCTACAACGATCACGCG 38274 |||||||||||||||||||||| ||||||||||| | || ||||||||||| |||| | Sbjct 1537 TCGACGCTGTGGGGTGACGAGAACAAGGGCCGCGTGGTCGCGATCTACAACGACCACGTG 1478 Query 38275 AACGACGGCGCCGGCCTC---------------CGCGACAACCGGCTGCGCCTCGAACTG 38319 |||| || || ||| || ||||||||||| |||| || | || Sbjct 1477 AACGCCGCCGACGGTGTCGACGGGCACGGTCACCGCGACAACCGTCTGCAGCTGCAGCTC 1418 Query 38320 CGCGCCGACCAGGACTGGACCGCGTGGCACCAGCTGTCCGGCCAGTACCTCCGGCAGGAA 38379 || ||||| |||||||| | || |||||| || | ||||| |||| ||| |||| Sbjct 1417 CGTCCCGACGAGGACTGGGCGGCCTGGCACAAGATTTCCGGGAGGTACATCCCTCAGGCG 1358 Query 38380 GAGTTCGGCGACCGCGTCGAAGAACTCCTCCATACCGTCGTCGAGCCGGCGCAGGCCGAC 38439 |||||||||||| | |||| || ||||| || ||||| ||| || | ||||||||| Sbjct 1357 GAGTTCGGCGACATCATCGAGGACCTCCTGCACACCGTGGTCTCACCCGACCAGGCCGAC 1298 Query 38440 CTGATGGAGGTCATCGACTCGATCCGCGCGACCAGCAAGGGCAGCTTCGAGTCGAAGATC 38499 || | |||||||||||||| |||||| | || |||| || |||||||| | ||| Sbjct 1297 CTCGTCGAGGTCATCGACTCCATCCGCACCACGAGCAGCGGGGTGTTCGAGTCCACCATC 1238 Query 38500 TCCCGTGCCGACGGCGGCCAGCAGCTCGAGTACAAAGAGGACGTCTCCACCACCGCGGG- 38558 ||| | || ||| |||| |||||||| | |||||||| ||||||| || || Sbjct 1237 CGCCGCGACGTCGGTACCCAGGCGCTCGAGTTCCGCGAGGACGTGTCCACCAGTGCCGGA 1178 Query 38559 -GAAGTCCGGGCAGCTCGAGGTGCC-GAAGACCGTGACCCTCGCGATCCGCCCGTGGGAA 38616 ||| || | ||||||||||| || | || ||||| |||| |||| || Sbjct 1177 CGAACTCAATCC--CTCGAGGTGCCTCGCGAGC-TGGTGCTCGCACTCCGGCCGTACGAG 1121 Query 38617 GGGCTCGACACCTACAAGGTGGAGGGCTGGTTCCGGCTGCGCGTGCAGAACGGGCAGCTG 38676 || | || |||||| |||| || |||||||| || || || | || ||| Sbjct 1120 GGCATGGAGACCTACGAGGTCCGGGCGTGGTTCCGCCTCAAGGTCCACCAGGGATCACTG 1061 Query 38677 TCCCTCGCGATCAAGCTGAAGCCCACCCGCTCGATCCTGCGGGCCGCCTGGGCTGACGTC 38736 |||||| | ||||| || |||||| | ||||||| || ||| | ||| || Sbjct 1060 CTCCTCGCCGTGAAGCTCCGACCGACCCGCACCGTCCTGCGCCAGGCGTGGTCCGACATC 1001 Query 38737 ATCACCCAGATCGAGCAGCACCTCGACGGCAAGCCGGTCCTCGCCAC 38783 || || | |||||| || || | | |||||||||||| ||||| Sbjct 1000 GTCGCCGACATCGAG--GC-CCACACCACCAAGCCGGTCCTGGCCAC 957 >seq219746 Length=1062 Score = 208 bits (230), Expect = 3e-49 Identities = 430/638 (67%), Gaps = 36/638 (6%) Strand=Plus/Plus Query 43004 GTGCACCAATCACTCGGTGGCGAAGGGCCGCAAACGAGTTGCTGCGCAGCCTGATCTCTT 43063 ||||||| |||||||||| || ||||| ||| || | | || || || | | Sbjct 24 GTGCACCCATCACTCGGTCGCCCAGGGCATCAAGCGCGCCGACAAGCGCCCCGACCCCAA 83 Query 43064 CGATGAGGTGCTGCCCGACGCGGCGGCCGAGAGATCGAGAGCGACGATGTGGGACGTCCC 43123 || |||||| ||||||||| || ||||| | ||| | |||||||||||||||||| Sbjct 84 CGGGGAGGTGTTGCCCGACGACGCCGCCGAACGCTCGCGGGCGACGATGTGGGACGTCGT 143 Query 43124 GCGGTTCGCCGAGGTCCACCAGTACCGCGCCGTGATCGTCGAGAACGTTGTCGACGCGTT 43183 |||||||||||| |||||||||||| | | ||||||| ||||||||||||| || Sbjct 144 CCGGTTCGCCGAGTACCACCAGTACCGATCAATCGTCGTCGAAAACGTTGTCGACGTGTA 203 Query 43184 CCACTGG--GTTCCGTTC-CGCGCGTGGCTGATGGCGATGGACTGCCTCGGCTACGACCA 43240 |||| ||| |||| ||| ||||||| |||| |||| ||| |||||| |||| Sbjct 204 TTTCTGGCCGTT--GTTCGCGC-CGTGGCTCGCCGCGACGGACGCCCTGGGCTACAACCA 260 Query 43241 CCACATCGTCATGCTCAACTCGATGCACGCCCAGACGTTCGGGCCGGGGGCGCCGCAGTC 43300 | | ||||| |||||||||||||||||| ||| |||||| | | ||| || || || Sbjct 261 CGAGATCGTGTGGCTCAACTCGATGCACGCGCAGCTGTTCGGTCAGCCGGCCCCTCAATC 320 Query 43301 CCGCGACCGGATGTACGTCGTGTTCTGGCACAAGGGCAATCCGCGCCCGGACCTCGGCCG 43360 | ||| |||| || ||||| | | ||| | Sbjct 321 AAGGGACAGGATCTATGTCGT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGGGCTG 379 Query 43361 CGTGGTCCGCCCGAACGCAATCTGTGCGGAGTGCGGCCCGGTCGCCGCGATGCAGGCATT 43420 || ||||| || ||| ||||| ||| || || || | | Sbjct 380 TGT-----GCCCG-------TC--------GTGTGGCCCTGTCCAGTCGGTGAAGACCTG 419 Query 43421 CAAGAAGACCGGCAGCG--CGTGGGGCCGGTACCGCGCCCAGTACGTCTACCGCTGCCCG 43478 ||| | |||| |||| ||||||||| ||||||||||||||| | | ||||||| Sbjct 420 GAAG-CGCCCGG-AGCGTCAGTGGGGCCGCTACCGCGCCCAGTACACGTTCTCCTGCCCG 477 Query 43479 AACGTGCGGTGCCGCAACGCGATCGTTGAACCGCTGTACCGTCCGGCAGCCGACATCATC 43538 |||| | | || || | || ||||| | || || || || ||||||||| Sbjct 478 AACG---GCTCATGCGCGGCCACAGTGGAACCCGACTGGCGACCCGCCGCAGACATCATC 534 Query 43539 GACTGGACCCTCGAAGGGCA-GCGCATCGGCGACCGCGCGAAGCCGCTCGCCGAGAAGAC 43597 |||||| | || | |||| |||||||| |||||| ||||| ||||||||||| Sbjct 535 GACTGGTCGCT-GCCCGGCACCCGCATCGGTGACCGCAAACGCCCGCTGGCCGAGAAGAC 593 Query 43598 CATGGCCCGCATCCAGGCCGGGATCGACCGGTACTGGG 43635 |||| |||| |||||||||||||||||||| ||||||| Sbjct 594 CATGACCCGTATCCAGGCCGGGATCGACCGCTACTGGG 631 >seq84561 Length=1800 Score = 165 bits (182), Expect = 3e-36 Identities = 215/292 (74%), Gaps = 18/292 (6%) Strand=Plus/Plus Query 50306 CCGTGACATGTCACACTGGTGCCAGTGACACACGTGTGTCCACAACCCTCGGCACCCTC- 50364 ||||||||||||||||||||| ||| |||||||||||||||| | |||| | |||| Sbjct 648 CCGTGACATGTCACACTGGTGTCAGCGACACACGTGTGTCCAGA--CCTCCGAACCCAGC 705 Query 50365 -----TCAGGTGGCGGGGGTTTCGTCATTCCGGAGGCGCATCACATGCCCCGAGAAGTTC 50419 || ||| ||||||||||||| || ||||||||| ||| | ||||| | Sbjct 706 CGCCATCGGGTC-CGGGGGTTTCGTCGTTTCGGAGGCGCG----ATGAGC---GAAGTAC 757 Query 50420 CGACCCCCGACGGCATCGACTCCCTCATCACCACCACCGAAGCCGCCACCCTCTGCGGAG 50479 || |||||||||||| |||| || |||||||| |||| |||||| | ||| | | Sbjct 758 TCACGCCCGACGGCATCCACTCGCTGATCACCACGGCCGAGGCCGCCCAGCACTGTCGGG 817 Query 50480 TGTCCACCGCAACCGTGCGGAAATGGGTGCAGCGCAACAAGCTCGAGCCGTCCGGCCTCG 50539 | ||| || ||| | || || |||||||||||| ||||| || || |||| || Sbjct 818 TATCCGAGGCCACCATCCGCAAGTGGGTGCAGCGCGGGAAGCTGACACCATCGGGCCGCG 877 Query 50540 A-CGACAACGGCCGCAACCTGTTCCGGCTTATCGACGTCGCCAAGGCGGAGC 50590 | | ||| | | |||||||||||||| || |||| || |||||||| |||| Sbjct 878 ACCCACAGC-GTCGCAACCTGTTCCGTCTGCTCGATGTGGCCAAGGCCGAGC 928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 165976873354994