Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031112.1 Length=59265 Score E Sequences producing significant alignments: (Bits) Value seq232712 223 1e-53 seq222324 159 1e-34 seq148523 109 2e-19 >seq232712 Length=770 Score = 223 bits (246), Expect = 1e-53 Identities = 207/261 (79%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 3035 TCACCGCCGGCA-CCCGCTCGGGCCTGTGGTCACACATGGCCGAGGCGATCAATCAGCTG 3093 |||||| ||| ||||| || |||||| | |||||| | || |||| || || Sbjct 259 TCACCGGCGGGTTCCCGC---GGTCTGTGGGCGCACATGCACACCGCCATCACCCACCTC 203 Query 3094 CGACCCCGCTGGGTCGTCATCGAGAACGTGAGAGGACTGCTCAGTGCCACAGCACATCGC 3153 ||||| |||| || |||||||| || || || || |||||||||||| ||| |||||| Sbjct 202 CGACCGCGCTACGTGGTCATCGAAAATGTCAGGGGGCTGCTCAGTGCCCGAGCCCATCGC 143 Query 3154 CCGATGGAATCCGAGCCGGATGCTCTGGGAGACCGAGACACTCAGCCTGTTCTCCGCGCA 3213 || ||||||||||| || ||| ||||||||||| ||| ||| ||||||||||| ||| Sbjct 142 CCAGTGGAATCCGAGTCGAATGGTCTGGGAGACCACGACTCTCGACCTGTTCTCCGAGCA 83 Query 3214 CTCGGAGCCGTACTCGGCGACCTTGCCGACCTCGGGTATGACGCGCAATGGTGCACTGTT 3273 ||||||||||||||||| |||||| ||||| |||||||||||||||| ||| ||||||| Sbjct 82 CTCGGAGCCGTACTCGGAGACCTTTCCGACATCGGGTATGACGCGCAGTGGGTCACTGTT 23 Query 3274 GCCGCTGCCGACGTCGGCGCC 3294 |||| ||| ||||| |||| Sbjct 22 CCCGCCTCCGCCGTCGACGCC 2 Score = 150 bits (166), Expect = 7e-32 Identities = 162/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 2786 TGAGGGTCGGGTCACTATTCAGCGGGTACGGCGGGCTCGACCTCGCCGTATCCGCTGCT- 2844 ||||| |||| ||||| ||| ||||||||||| ||||||||||| || | | | | Sbjct 454 TGAGGATCGGATCACTCTTCTCGGGGTACGGCGGCCTCGACCTCGC-GTGTGAGGCGTTC 396 Query 2845 TTCGGTGCATCGACAGCATGGTTCGTCGAGTTCGAGAAAGCACCCTCACGCATCCTCGCC 2904 |||||||| |||| |||||| || ||| |||| || | || || ||||||||| Sbjct 395 TTCGGTGCGACGACCGCATGGCACGCCGACATCGACCCTGCTGCGTCGCGGATCCTCGCC 336 Query 2905 CACCATTGGCCCGACGTGCCGAACCTCGGCGACGTGACCGCTGTCGACTGGTCGCAGGTC 2964 ||||| ||||| ||||||||||| ||||||| | ||||| |||||||| | |||| Sbjct 335 CACCACTGGCCGACCGTGCCGAACCACGGCGACATCACCGCCATCGACTGGACTGCGGTC 276 Query 2965 GAACCGGTCGACGTGCTGACGGGCGGGTTCCC 2996 ||||| || |||||| | || ||||||||||| Sbjct 275 GAACCAGTGGACGTGATCACCGGCGGGTTCCC 244 >seq222324 Length=1056 Score = 159 bits (176), Expect = 1e-34 Identities = 256/359 (71%), Gaps = 23/359 (6%) Strand=Plus/Minus Query 36835 CACCGTCGAGAACGTGCCCGTCGGCGAGGGATCGTGGTCGGCGGCCGACGCGAACAACGT 36894 ||||||||||| ||| || | |||||| |||||||||||| | || || ||| || | Sbjct 971 CACCGTCGAGATCGTTCCGCCCAACGAGGGTTCGTGGTCGGCGTCTGAAGCCAACGACAT 912 Query 36895 CGCGTTTCACCTGTGTTTCGCGGGGTCGTTCGCCGAGTGGTCGCGCGGCCGATGGCT-GT 36953 ||| | |||||||| |||| |||||||||||||||||||||||||| | ||||| | Sbjct 911 CGCCTACCACCTGTGCATCGCTGGGTCGTTCGCCGAGTGGTCGCGCGGGCAGTGGCTCGA 852 Query 36954 CGG--CCGACGCATC---CGACGGACTCAACGAAGA---CGCGATGATGTGGCGCGGCGC 37005 ||| ||||| || ||||||||| ||| || |||||| | || |||||| Sbjct 851 CGGGATCGACGACTCCGGCGACGGACTGTCCGAGGATCTCGCGATCACCCGG-GCGGCG- 794 Query 37006 CAAGGCCATGGCCGCCGCATGTCAGCAGTTCGGGTTCCCCGCCAAGGCGGTCGGCTCGCT 37065 ||||| ||||||||||| | |||||||||| |||||| | || | ||| ||| Sbjct 793 -AAGGCAATGGCCGCCGCGTCGCAGCAGTTCGAGTTCCCGCTCGAGTACGCCGGATCGAA 735 Query 37066 GCGCTACGCAGACAACAACTGGCCGCCCGAGCC--AGGTATCTGCGGGC--ACGTGTCGT 37121 || ||| | |||||||| | || ||| | |||| || | | | Sbjct 734 CGGCACCGCGG------GCTGGCCGCTGAAACCGAAGGGCGTCGTGGGCCATCGCGAC-T 682 Query 37122 TCGGCCGTCGCGGCGGCGGCCACACCGACCCGGGCGTCAACTTCCCCATGGACGAGTTC 37180 |||| ||||||||| |||||||||||||||| | ||||||||||||||||||| Sbjct 681 TCGGTGCCCGCGGCGGCAACCACACCGACCCGGGCAACGGCTTCCCCATGGACGAGTTC 623 >seq148523 Length=1916 Score = 109 bits (120), Expect = 2e-19 Identities = 124/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 4138 CCGACCGAGCTGAACCGCAACCAAAAGCCACGTCTCAACGCCGCGTTCGCCGAGTGGATG 4197 |||||||| | |||| ||| || || || || ||| |||| | || |||||| Sbjct 556 CCGACCGAACCGAACACCAAGGGCAACCCCCGGCTGTCCGCGCTGTTCCCGGAATGGATG 615 Query 4198 ATGATGCTGCCCGCGGGGCACGTCACCGACCCCGCGATCGGGCTGTCGCGCAGCGACCAG 4257 ||| | || | ||| || |||||||||||||| ||||||||| | |||| ||| ||| Sbjct 616 ATGTTCCTCCGCGCCGGCTGGGTCACCGACCCCGCCATCGGGCTGACCCGCAACGAGCAG 675 Query 4258 CTCAAGGCGATCGGTAACGGCGT-GTGCCCGCCGCAGGCGTACG 4300 |||||||| ||||| ||||| || ||| ||||||||||||| || Sbjct 676 CTCAAGGCCATCGGCAACGGTGTCGTG-CCGCCGCAGGCGTTCG 718 Score = 84.2 bits (92), Expect = 8e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 3330 TCCTGCCGACGCCGCGCGCGACGGACGGGACGAAAGGCGGCCCGAATCAGCGTGGCTCGT 3389 || |||||||||| || ||| | ||||| ||||||||||| ||||| ||||| || |||| Sbjct 327 TCATGCCGACGCCACGGGCGTCCGACGGCACGAAAGGCGGACCGAACCAGCGGGGGTCGT 386 Query 3390 CGGGCGACCTGATGCTGCC 3408 | || ||||| |||||||| Sbjct 387 CCGGAGACCTCATGCTGCC 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188902789796042