Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031122.1 Length=44929 Score E Sequences producing significant alignments: (Bits) Value seq235444 242 1e-59 seq54171 219 1e-52 >seq235444 Length=879 Score = 242 bits (268), Expect = 1e-59 Identities = 229/292 (78%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 17951 CGGTGCGGTGATGGCCTTCCAGGGTGGCGTGCTCTACCGCAAGGACGGCCACGACCACCA 18010 ||| ||||| ||||| |||||||| || |||||||||||||||||||| || | Sbjct 7 CGGCGCGGTCATGGCGTTCCAGGGCGGTGTGCTCTACCGCAAGGACGGGCAGCCCGGGTT 66 Query 18011 CGTCGTCAAGGGGCTCATCGGCCAGCGCTGGGCGCTCGAGGGATACGAAAACGGCCCGCT 18070 |||||| ||||| ||||||||||||||||||| | ||| |||||||| || ||| || Sbjct 67 CGTCGTGAAGGGCGTCATCGGCCAGCGCTGGGCCCGCGACGGATACGAGAAGGGCGACCT 126 Query 18071 CGGCTGGCCGACGTCCGACGAGATCCCGAACGGCACCGGCGGTAAGTACCAGACCTTCGA 18130 ||||||||| | |||||||||||||| |||||||||||||| ||| |||||| Sbjct 127 CGGCTGGCCCATCTCCGACGAGATCCCCAACGGCACCGGCGGCGTCGTGCAGCTCTTCGA 186 Query 18131 GCACGGCGTCCTCGAGTGGGACCCGTCCGGCGCCGTGAAGCGGATCGGTGCCGCCGCGAA 18190 |||||| |||||||||||||| ||||||| || ||| |||| |||||||| | Sbjct 187 GCACGGACGCCTCGAGTGGGACCGCACCGGCGCGGTCAAGGAACTCGGCGCCGCCGCCAC 246 Query 18191 GGATCTCACTCTCGTCAACGCGGCCGGCTTCCCGCTGGCCGTCGACGCAGTC 18242 || | ||| |||||||||| |||||| |||| ||||||||||||| ||| Sbjct 247 CGACCACACCATCGTCAACGCCGCCGGCCTCCCTGTGGCCGTCGACGCCGTC 298 >seq54171 Length=260 Score = 219 bits (242), Expect = 1e-52 Identities = 207/262 (79%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 17166 GACCCCGTTTGGCTCCCCGACGTACTGCGCGCAGAAGGTCTGCGCTGCGACATCTACCCC 17225 || ||| | ||||||||||| || |||||||||| | || ||||||||||||||| Sbjct 1 GATCCCATCTGGCTCCCCGAGGTGCTGCGCGCAGCGCGCCTCACATGCGACATCTACCCC 60 Query 17226 GGCGCGTTCGAACGCGGACACGGCGACTTCGGAACGATCTGGGG--TCCATTCATGCACC 17283 ||||| ||| | ||||| |||||||||||||| |||||||||| ||| || |||| Sbjct 61 GGCGCATTCCAGCGCGGCCACGGCGACTTCGGGTCGATCTGGGGCATCC--TCGACCACC 118 Query 17284 ACACCGGCTCGTTCGGCGAGACACCGCGGGGCATCGCGCAGCACTCGTCTCTCGGGCTCG 17343 |||||||| ||||||||||| ||||| || ||||| ||||| |||| ||||| || | Sbjct 119 ACACCGGCAGCTTCGGCGAGACGCCGCGCGGTATCGCCGAGCACCCGTCGCTCGGTCTGG 178 Query 17344 CGTCGCAGCTACACCTCGCGGCCAACGGCGTCGTCACGCTGTGCGGCGTCGGCGTCGCAT 17403 |||||||||| |||||| || | || || | ||||||||| || ||||| |||| | Sbjct 179 CGTCGCAGCTGCACCTCTCGCCGAAGGGTCGCTACACGCTGTGTGGTGTCGGGATCGCCT 238 Query 17404 GGCACGCCGGCACCGGCTCCTG 17425 |||||||||||||||| || || Sbjct 239 GGCACGCCGGCACCGGGTCGTG 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143178535747786