Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq76033 100 4e-16 seq97708 84.2 3e-11 >seq76033 Length=7108 Score = 100 bits (110), Expect = 4e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 200839 CTTTCCTGTCAGCTGTATCAGCGTAGCGCTGATATGTTTTTAGGCGTGCCGTTCAACATT 200898 || ||||| ||||| |||||||| || || || |||| | || |||||||||||||| Sbjct 6367 CTCTCCTGCCAGCTCTATCAGCGCAGTGCCGACCTGTTCCTCGGTGTGCCGTTCAACATC 6426 Query 200899 GCATCATACGCACTACTGATTCACATGGTAGCCCAACAGGTCAATATGACTGTCGGTGAT 200958 || || || || || || | |||||| | ||| |||| | | |||||||| Sbjct 6427 GCGTCCTATGCCCTGCTCACCCACATGATGGCCGCGCAGGCCGGCCTCGAGGTCGGTGAG 6486 Query 200959 TTCGTATGGACGGGTGGTGACGTACACATCTACAGCAATCACGAAGAGCAGGTTCGTCTG 201018 ||||| ||||| || || ||| ||||||||| ||| |||| || ||||| | || Sbjct 6487 TTCGTGTGGACCGGCGGGGACTGCCACATCTACGACAACCACGTCGACCAGGTGAGATTG 6546 Query 201019 CAACTGTCTCGTGATCCG 201036 || || || ||||| ||| Sbjct 6547 CAGCTCTCGCGTGACCCG 6564 >seq97708 Length=2017 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 3208 TATTGTCTCGTAGCTCAGTTGGTCAGAGCGCTCGCCTGATAAGCGGGAGGTCAGTGGTTC 3267 ||| | || |||||||||||||| ||||| | ||| ||||||||| | |||| | ||||| Sbjct 624 TATGGGCTAGTAGCTCAGTTGGTTAGAGCACACGCTTGATAAGCGTGGGGTCGGAGGTTC 565 Query 3268 AAGTCCACTCGAGACAACCAA--TTCGGTTCTGTAGCTCAGTCGGTAGAGCAC 3318 |||||| | | | | ||||| || || |||||||||| || ||||||| Sbjct 564 AAGTCCTCCCTGGCCCACCAAGGTTTGGGGGTGTAGCTCAGCTGGGAGAGCAC 512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780646803264000