Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq243462 122 1e-22 seq61277 122 1e-22 seq76033 116 6e-21 seq263246 105 1e-17 seq256480 104 4e-17 seq108450 102 1e-16 seq263247 89.7 8e-13 >seq243462 Length=264 Score = 122 bits (134), Expect = 1e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 || || ||||| || ||||||| | |||||| | |||||||| || |||||| Sbjct 198 GATCGCACCGGTACCGGCACCAGGAGCGTGTTCGGGCACCAGATGCGGTTCGACCTGTCG 139 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 | |||||||||||||||||||| || ||| |||||||||| || | ||| ||| ||| Sbjct 138 GAGGGGTTCCCGCTGGTCACCACGAAGAAGGTGCACCTGCGGTCGGTGATCGTCGAGCTG 79 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 ||||||||||| |||||| |||||| ||| | ||| | || | ||| | ||| Sbjct 78 CTGTGGTTCCTGCGCGGCGAGACCAACGTCCGCTGGCTGCAGGAGCGCGGCGTGACGATC 19 Query 196251 TGGGATGAGTGGGCAGA 196267 ||||| || ||||| || Sbjct 18 TGGGACGAATGGGCGGA 2 >seq61277 Length=456 Score = 122 bits (134), Expect = 1e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATC 196808 || || || ||||| ||||| ||| || |||||||||||||| || |||||||||||| Sbjct 268 CTCTCGTGCCAGCTGTACCAACGCTCGGCGGACGTCTTCCTCGGGGTGCCGTTCAACATC 327 Query 196809 GCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGAT 196868 || || ||||| ||| |||| ||| |||| || ||| |||| | || |||| || Sbjct 328 GCGTCCTACGCCCTGCTGGTGCACCTGGTCGCCCAGGTGGTCGGTCTGCAACCGGGCGAC 387 Query 196869 TTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTTG 196928 ||| || || |||||| | || |||||||| ||||| || || |||||| |||| Sbjct 388 TTCATCCACACCCTGGGCGATGCGCACCTGTACTCCAACCACCTCGAGCAGGCCCGGTTG 447 Query 196929 CAGCT 196933 ||||| Sbjct 448 CAGCT 452 >seq76033 Length=7108 Score = 116 bits (128), Expect = 6e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 196748 ACTGTCCTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACAT 196807 ||| ||||| ||||| || ||||||||||| ||| | ||||||||||| ||||||||||| Sbjct 6366 ACTCTCCTGCCAGCTCTATCAGCGCAGTGCCGACCTGTTCCTCGGTGTGCCGTTCAACAT 6425 Query 196808 CGCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGA 196867 ||| || || || ||| | |||||| |||| ||||| | | | || ||||| Sbjct 6426 CGCGTCCTATGCCCTGCTCACCCACATGATGGCCGCGCAGGCCGGCCTCGAGGTCGGTGA 6485 Query 196868 TTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTT 196927 ||||| ||||| ||||| || ||| | ||| ||||| | || |||| | || Sbjct 6486 GTTCGTGTGGACCGGCGGGGACTGCCACATCTACGACAACCACGTCGACCAGGTGAGATT 6545 Query 196928 GCAGCTCTCCCGTG 196941 ||||||||| |||| Sbjct 6546 GCAGCTCTCGCGTG 6559 >seq263246 Length=351 Score = 105 bits (116), Expect = 1e-17 Identities = 116/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| || ||||| ||||| || | ||||| |||||||| || || || ||| Sbjct 185 GACCGCACAGGCACCGGCACGCTCAGCGTGTTCGGCGCGCAGATGCGGTTCGATCT-CGC 243 Query 196131 AAAGGG-TTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACT 196189 |||| ||||| || |||||||||| ||| | ||||| || || |||||| |||||| Sbjct 244 GCAGGGCTTCCCCGTGCTCACCACCAAGAAGCTCCACCTCCGCTCGATCATCATCGAACT 303 Query 196190 GTTGTGGTTCCTGAACGGCGACACCAACATCC 196221 | ||||||||||| ||||||||||||| ||| Sbjct 304 GCTGTGGTTCCTGCGCGGCGACACCAACGTCC 335 >seq256480 Length=539 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 196170 CGATCTATCATCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTG 196229 || || |||||| ||||||| ||||||||||| |||||||||||| ||| | ||| Sbjct 183 CGCTCGATCATCGTCGAACTGCTGTGGTTCCTGCGCGGCGACACCAATGTCCGCTGGCTG 124 Query 196230 AAAGACAACAACGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCC 196289 | || ||| ||| |||||||| || ||||| || || | |||||||| ||||| Sbjct 123 CAGGAGCGCAAGGTCGCGATCTGGGACGAATGGGCGGACGAGGCGGGCGATCTCGGCCCG 64 Query 196290 GTCTACGGTAAGCAGTGGCG 196309 |||||||| ||||| ||||| Sbjct 63 GTCTACGGCAAGCAATGGCG 44 >seq108450 Length=476 Score = 102 bits (112), Expect = 1e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 196168 TGCGATCTATCATCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATC 196227 |||| | ||||||||||||||| |||||||||||| ||||||||||||| | | | Sbjct 195 TGCGGTNNATCATCCACGAACTGCTGTGGTTCCTGACCGGCGACACCAACGTGCGCGCCC 254 Query 196228 TGAAAGACAACAACGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCC 196287 | | | |||| || | |||||||| |||||||| || | |||||||||| || | Sbjct 255 TCCAGGCCAACGGGGTGACGATCTGGGACGAGTGGGCCGACGCCAATGGCGATCTCGGAC 314 Query 196288 CCGTCTACGG 196297 |||||||||| Sbjct 315 CCGTCTACGG 324 >seq263247 Length=570 Score = 89.7 bits (98), Expect = 8e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 196758 CAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATCGCTTCGTAC 196817 ||||| ||||||||| | ||| |||||||||| || |||||||||||||| ||| Sbjct 338 CAGCTCTACCAGCGCTCGGGCGACATCTTCCTCGGCGTGCCGTTCAACATCGCCAGCTAC 279 Query 196818 GCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGATTTCGTCTGG 196877 || ||| | ||||| | || ||||| | ||| || || || ||| ||||| Sbjct 278 GCGCTGCTCACCCACATCCTCGCGCAGCAATGCGGGCTGGAGGTCGGCGAGTTCATCTGG 219 Query 196878 ACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGC 196921 || |||||||| ||| || || || |||||||| || ||||| Sbjct 218 ACCGGCGGCGACTGCCACCTCTATTCGAACCATCTCGACCAGGC 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 767639212126280