Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031230.1 Length=98136 Score E Sequences producing significant alignments: (Bits) Value seq84152 289 2e-73 seq134864 161 6e-35 seq136878 134 9e-27 seq6603 120 2e-22 seq248049 104 1e-17 seq66867 102 5e-17 seq231474 96.9 2e-15 seq153771 93.3 3e-14 seq12676 91.5 9e-14 >seq84152 Length=5826 Score = 289 bits (320), Expect = 2e-73 Identities = 521/757 (69%), Gaps = 56/757 (7%) Strand=Plus/Plus Query 46618 GGTGTGGACCTCTCACATTCGCCGAAGTGGCGGGAACAGCTCGGGTCGCTCGGCGGCGGC 46677 ||||| |||||| || ||| ||||||||| || |||||||||||||||||||||||| Sbjct 4695 GGTGTCGACCTCGGGCACTCGAAGAAGTGGCGTGAGCAGCTCGGGTCGCTCGGCGGCGGC 4754 Query 46678 AACCACTTCATCGAGCTGTGCCAGTCGGTGATTGCGGAATACGACGACGGTGAGCTGTGG 46737 |||||||||||||||||||||| ||| || | || || ||| ||||| Sbjct 4755 AACCACTTCATCGAGCTGTGCC--TCGACGAGTCCG--AT-------CGGG----TGTGG 4799 Query 46738 CTGTTCCTCCATTCGGGTTCGCGTGGTGTCGGCAACAAGATCGCCCAGAAGCANNNNNNN 46797 ||||||| || || |||||||| |||||||||||| |||||| ||| || Sbjct 4800 ATGTTCCTGCACTCCGGTTCGCGGGGTGTCGGCAACCGGATCGCGCAGCGACACATCGCG 4859 Query 46798 NNNNNNNNNNNNNNGTGCAAGCGATGGCATGTCCCGCTGGCGAATCCTGACCTGGCCTAC 46857 | || | ||||| || ||| |||| || ||||| || ||| Sbjct 4860 ATCGCGCAGAAGCTGGCCAGGAAGTGGCACATCGTGCTCCCGAACCCGGACCTCGCGTAC 4919 Query 46858 CTACCCTCCGGCACGCAGGAATTCACCACCTACCTACGAGAGCTGCGGTGGGCCCAGCGA 46917 || || |||| |||| ||| || ||||| || || ||| |||||| ||||| Sbjct 4920 CTGCCGTCCGAGACGCCGGAGCTCGAGGTGTACCTCCGGGATCTGGCGTGGGCACAGCGG 4979 Query 46918 TTCGCACTCGAGAACCGCGCCGAGATGATGGATCGGTTCGTCGCGGTTTTCCAGTGGTGG 46977 ||||| |||||||||||||| |||||||||||||| ||| ||| ||| || Sbjct 4980 TTCGCGCTCGAGAACCGCGCTGAGATGATGGATCGCTTC----CGG-----CAGGCGT-- 5028 Query 46978 CTCGAGGATCAGGGGTACGACTTCCATAACGACGAGATGCCTGATGAGGTCGAGGTCCGG 47037 ||| | | ||||| | | |||||| || | ||| ||||| | | Sbjct 5029 -TCGCGCACT--GGGTAGGTC-------ACGACGGTGACCCGGCCGAGCTCGAGACCGAG 5078 Query 47038 CGCATCAACTGCCACCACAACTACACCG----AGAACGTCACGATCAACGGCGAGAGGGT 47093 || |||||| ||||||||||||||||| ||| || |||| |||| || || Sbjct 5079 CGGATCAACACCCACCACAACTACACCGTCCGAGAGCGACACGG----CGGCAAGGACGT 5134 Query 47094 GTGGCTGACGCGCAAGGGTGCGATCGACGCCAGCGAGGGCAAGTACGGACTCATCCCCGG 47153 ||||||||| |||||||||||||||||||| |||||| | || ||||||| || Sbjct 5135 GTGGCTGACCCGCAAGGGTGCGATCGACGCGCACGAGGGTGTGCGGGGCATCATCCCGGG 5194 Query 47154 CTCCATGGGCACCAAGTCGTACGTCGTTGTGGGGCAGGGGAATT--CGTCTGGCCTATAC 47211 ||| ||||| || ||| ||| |||| | |||| |||| || | || || | Sbjct 5195 CTCGATGGGGACGCGGTCCTACATCGT-GACCGGCAAGGGACACGGCGGC-GGTCTGTGT 5252 Query 47212 TCGGCACCACATGGGGCTGGCCGGAACTTCTCTCGCACCGAGGCTCGCAAGCG---GTTC 47268 ||||| || || || || || || ||||| || ||||||| |||||| || | Sbjct 5253 TCGGCGCCGCACGGCGCGGGGCGTCGGTTCTCACGGGCCGAGGC---CAAGCGTCGGTAC 5309 Query 47269 ACTGCGGACGACCTCGCGAAGGCCATGGAGGGCATCGAGTACCGCCACGGTGAGGAGTGG 47328 || | || ||| |||| | || ||| || ||||||||||| ||||| | ||||||| Sbjct 5310 ACCGAGGCCGATCTCGAGGCCGCGATGACCGGGATCGAGTACCGGCACGGGGCGGAGTGG 5369 Query 47329 ATCGACGAGATCCCCGCA-GCGTACAAGGACATCGAC 47364 ||||||||||| |||||| ||||||||| ||||||| Sbjct 5370 ATCGACGAGAT-CCCGCAGGCGTACAAGAGCATCGAC 5405 Score = 134 bits (148), Expect = 9e-27 Identities = 140/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 46265 TCGACGAGACCACGCGCAAGCAGGCCGAGGAGATCGCCAGTCTGCCATTCATCTACCCCC 46324 ||||||||| ||| | | |||||| |||||| ||| ||||| ||| | |||| | Sbjct 4401 TCGACGAGAAGACGATCGACCAGGCCAAGGAGACCGCAGCGCTGCCCTTCGTGCACCCGC 4460 Query 46325 ACGTTGCGCTGATGCCAGATGCTCACGCAGGCAAGGGGTCTGCCGTGGGCACGGTGATCC 46384 |||| ||| ||||||| ||||| ||| |||||||| || || || || || || |||| Sbjct 4461 ACGTGGCGTTGATGCCGGATGCGCACTACGGCAAGGGATCCGCGGTCGGTACCGTCATCC 4520 Query 46385 CCACCAAGGACGCCGTCATCCCAGCGGCCGTGGGTGTCGACATCGGTTGCGGGATGATCG 46444 | || |||||||||||||| || || || || ||||||||||| ||||| ||||||| Sbjct 4521 CGACGGTCGACGCCGTCATCCCGGCCGCGGTCGGGGTCGACATCGGGTGCGGCATGATCG 4580 Query 46445 GCGT 46448 ||| Sbjct 4581 CCGT 4584 >seq134864 Length=649 Score = 161 bits (178), Expect = 6e-35 Identities = 234/328 (71%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 47046 CTGCCACCACAACTACACCGAGAACGTCACGATCAACGGCGAGAGGGTGTGGCTGACGCG 47105 |||||||||||||||||| | || ||| | |||| ||| | ||||| || | || Sbjct 337 CTGCCACCACAACTACACGGCCCGCGAGACGCACCACGGTGAGCTGCTGTGGGTGTCCCG 278 Query 47106 CAAGGGTGCGATCGACGCCAGCGAGGGCAAGTACGGACTCATCCCCGGCTCCATGGGCAC 47165 ||||||||| ||| ||||| | ||| ||| || ||||| || || ||||| || Sbjct 277 CAAGGGTGCCATCAACGCCGAGGTCGGCGTCCCCGGGCTGATCCCGGGGTCGATGGGTAC 218 Query 47166 CAAGTCGTACGTCGTTGTGGGGCAGGGGAATTCGTCTGGCC-TATACTCGGCACCACATG 47224 |||||||||||| || |||||||| | | | || | | | ||||| || | Sbjct 217 GGCGTCGTACGTCGT-GTCCGGCAGGGGGAACGAGCAGTCCCTGTGCAGTGCACCGCACG 159 Query 47225 GGGCTGGCCGGAACTTCTCTCGCACCGAGGCTCGCAAGCGGTTCACTGCGGACGACCTCG 47284 | || |||||| || ||| || || |||| |||||| ||||| | |||||||| Sbjct 158 GAGCAGGCCGGGCCTACTCGCGGACGAAGGCGCGCAAGACCTTCACGGTCGACGACCTGC 99 Query 47285 CGAAGGCCATGGAGGGCATCGAGTACCGCCACGGTGAGGAGTGGATCGACGAGATCCCCG 47344 | ||| |||| || |||||||||||| || |||| || ||||||||||||||| Sbjct 98 GGGCGGCGATGGTCGGGATCGAGTACCGCGACACGGAGGCGTTCGTCGACGAGATCCCCG 39 Query 47345 CAGCGTACAAGGACATCGACCAGGTCAT 47372 || |||||||||||||||||||| || Sbjct 38 GCGCCTACAAGGACATCGACCAGGTGAT 11 >seq136878 Length=1830 Score = 134 bits (148), Expect = 9e-27 Identities = 218/314 (69%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 74563 TTCACTCCGAGTGGGGTTGCGGTAGCCAATTTCACTGTGGTGTCAAATCCCCGGAGATTC 74622 ||||| ||| || | ||||| ||||| ||||| || | ||| | || |||| ||| Sbjct 345 TTCACCCCGTCCGGTGCGGCGGTGGCCAACTTCACCGTTGCGTCCACGCCGCGGATGTTC 286 Query 74623 GACAAGCAAACGAATTCCTGGATTGACGAGGAGCCATGGTTCGTACGTTGCAACATCTGG 74682 ||| || || || |||| |||| ||| || |||| | || |||| ||||||| Sbjct 285 GACCGTCAGACCAACGAATGGAAAGACGGCGAGGCACTGTTCATGCGGTGCAGCATCTGG 226 Query 74683 CGTGACGCGGCCGAGAATGCCGCAGAGTCGCTTGACAAGGGCACTCGAGTGATCGTCCAG 74742 || || ||||||||||| | || ||| || |||||| |||| || ||||| | Sbjct 225 CGGGAGGCGGCCGAGAACGTGGCGGAGAGCCTCACCAAGGGTGCTCGTGTCATCGTGTCG 166 Query 74743 GGGCGTCTCAAGTCCCGGTCATATACCACCAACGAAGGCGAGGATCGAACGGTCCTTGAG 74802 || || |||||| || || || ||| ||| || ||| | || ||||| | ||| Sbjct 165 GGTCGGCTCAAGCAGCGCTCCTACGAAACCCGCGAGGGTGAGAAGCGCACGGTGGTCGAG 106 Query 74803 CTCGAGGTCGATGAGATCGGACCCTCGCTGCAGTGGGCCACTGCTAAGGTTCAGCGCACC 74862 ||||||||||| ||| |||| ||||||||| ||| || || || ||||| | ||| || Sbjct 105 CTCGAGGTCGAGGAGGTCGGTCCCTCGCTGAAGTACGCGACCGCCAAGGTCAACCGCGCC 46 Query 74863 GAACGAGGCGGCGG 74876 || ||||| || Sbjct 45 TCGCGTGGCGGTGG 32 >seq6603 Length=23608 Score = 120 bits (132), Expect = 2e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 27239 GGTGGCGTGCTTCCGGGCTACACCCCCGGCCGGGACGTGCACAAGTTCATCTCCCCGACC 27298 ||||| ||||| ||||||||| |||| ||| ||| |||| ||| ||||||| || Sbjct 5989 GGTGGTGTGCTGCCGGGCTACTCCCCTGGCTTCGACAACCACACCTTCGTCTCCCCCACT 5930 Query 27299 GGCGGCGAACTCCACCTGTCCGGTGGCGAGGCCATCATGCGGCCGGAGTGGACTCGGGCC 27358 || |||| || |||||||||||||||||||| |||||||| ||||||||||| | Sbjct 5929 GGTGGCGTGCTGCACCTGTCCGGTGGCGAGGCGATCATGCGCCCGGAGTGGACCAAGCAG 5870 Query 27359 GTGGGCGGTCCCGCTGCCGTGGACCGAATGAACCGAGAGGC 27399 ||||| || ||| || |||| || ||||||| ||||| Sbjct 5869 GTGGGTGGACCCCGAGCTGTGGCGCGGATGAACCAGGAGGC 5829 >seq248049 Length=1043 Score = 104 bits (114), Expect = 1e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 74662 TTCGTACGTTGCAACATCTGGCGTGACGCGGCCGAGAATGCCGCAGAGTCGCTTGACAAG 74721 ||| | || |||||||||||||| | || |||||||| | | | |||||||| | Sbjct 712 TTCCTGCGCTGCAACATCTGGCGGCAGGCTGCCGAGAACGTCACGGAGTCGCTCACCCGC 771 Query 74722 GGCACTCGAGTGATCGTCCAGGGGCGTCTCAAGTCCCGGTCATATAC--CACCAACGAAG 74779 ||| | || || |||||| || || |||||| | | || | | ||||| |||| Sbjct 772 GGCTCCCGCGTCATCGTCACCGGCCGGCTCAAG--CAGCGCAGCTTCGAGACCAAGGAAG 829 Query 74780 GCGAGGATCGAACGGTCCTTGAGCTCGAGGTCGATGAGATCGGACCCTCGCTGCAGTGGG 74839 ||||| | || || ||| | ||||| |||||||| |||||||| |||||||||| || | Sbjct 830 GCGAGAAGCGCACCGTCATCGAGCTGGAGGTCGACGAGATCGGCCCCTCGCTGCGGTACG 889 Query 74840 CCACTGCTAAGGT 74852 | || || ||||| Sbjct 890 CGACCGCCAAGGT 902 >seq66867 Length=2092 Score = 102 bits (112), Expect = 5e-17 Identities = 175/247 (71%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 43548 AAGGGTCTCGAGGAGCTCGACCAGGACCCG--GGCGTCGACGTCATCATCTGCACCCGAG 43605 |||| |||| || |||||| ||||||| || |||| |||||| | | |||| | Sbjct 1038 AAGGCACTCGCCGATCTCGACGCGGACCCGACGGTGTCG--GTCATCGTGATCGCCCGCG 981 Query 43606 GCGGTGGATCCAAGGAGGACCTGCTGCCGTGGTCTGATGAGG-GCTTGGTGCGTGCGGCG 43664 |||| || ||| ||||| |||||||||| || |||| ||| || || |||| | Sbjct 980 GCGGCGGCTCCGTCGAGGATCTGCTGCCGTTCAGCGACGAGGCGCTGTGT-CGCGCGGTG 922 Query 43665 TTCGCTTGCAA-CACCCCCATTGTCTCCGCGATCGGTCACGAGAACGACTGTCCACTCCT 43723 | |||| || |||||| | || || |||||||| ||||| ||| ||| || || Sbjct 921 T-CGCTGGCGCGCACCCCGGTGGTGTCGGCGATCGGACACGAACCCGATCATCCGCTGCT 863 Query 43724 TGACCGTGTGGCGGACCTGCGTGCCTCGACGCCCACCGACGCTGCGAAGAGGGTTGTGCC 43783 ||| ||||| |||||||||||| |||| |||||||| || || || | || || || Sbjct 862 GGACATGGTGGCCGACCTGCGTGCCGCGACCCCCACCGATGCGGCCAAACGCGTCGTCCC 803 Query 43784 AGACCTC 43790 ||| || Sbjct 802 CGACGTC 796 >seq231474 Length=516 Score = 96.9 bits (106), Expect = 2e-15 Identities = 145/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 47041 ATCAACTGCCACCACAACTACACCGAGAACGT-CACGATCAACGG-CGAGAGGGTGTGGC 47098 ||||||||||||||||||||||||||| || | || | ||| || |||| ||||| Sbjct 289 ATCAACTGCCACCACAACTACACCGAGCGCGAGCGCG-TGTTCGGTCGCGAGG-TGTGGG 346 Query 47099 TGACGCGCAAGGGTGCGATCGACGCCAGCGAGGGCAAGTACGGACTCATCCCCGGCTCCA 47158 || | |||||||| |||||| || || |||| | ||| || ||||||||||| | Sbjct 347 TGTCCCGCAAGGGCGCGATCCGTGCGGGCAAGGGTGATCGCGGGCTGATCCCCGGCTCGA 406 Query 47159 TGGGCACCAAGTCGTACGTCGTTGTGGGGCAGGGGAATTCGTC-TGGCCTATACTCGGCA 47217 ||||||| |||||||||||| ||| | ||| | || | | || || ||||| Sbjct 407 TGGGCACGGCGTCGTACGTCGTCACGGGCCTGGGCTACCCGCCGTCGCTGAT-GTCGGCC 465 Query 47218 CCACATGGGGCTGGCCGG 47235 || || ||||| |||||| Sbjct 466 CCGCACGGGGCCGGCCGG 483 >seq153771 Length=831 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 74680 TGGCGTGACGCGGCCGAGAATGCCGCAGAGTCGCTTG-ACAAGGGCACTCGAGTGATCGT 74738 |||||| | ||||||||||| | ||| ||||| |||| | |||| || || |||| Sbjct 269 TGGCGTCAGGCGGCCGAGAACGTCGCGGAGTC-CTTGCAGCGCGGCATGCGCGTCGTCGT 211 Query 74739 CCAGGGGCGTCTCAAGTCCCGGTCATATACCACCAACGAAGGCGAGGATCGAACGGTCCT 74798 |||||| || |||||||| || | || ||| ||| |||||| | || || ||| | Sbjct 210 CCAGGGACGGCTCAAGTCGCGCACCTACGAGACCCGCGAGGGCGAGAAGCGCACCGTCTT 151 Query 74799 TGAGCTCGAGGTCGATGAGATCGGACCCTCGCTGCAGTGGGCCACTGCTAAGGTTCAGCG 74858 ||| |||||||||| ||| |||| || ||| ||| ||||| || ||||| | || Sbjct 150 CGAGATCGAGGTCGAGGAGGTCGGGCCGAGCCTGAAGTTCGCCACGGCCAAGGTCAACCG 91 Query 74859 CACCGAACGAGGCGGCGG 74876 | || || ||||||| Sbjct 90 CGCCTCGCGCAGCGGCGG 73 >seq12676 Length=358 Score = 91.5 bits (100), Expect = 9e-14 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 46265 TCGACGAGACCACGCGCAAGCAGGCCGAGGAGATCGCCAGTCT-GCCATTCATCTACCCC 46323 ||||||| ||||| | ||||||| || ||| |||| || | ||| | | | || Sbjct 123 TCGACGACCTCACGCTCGCGCAGGCCAAGCAGACCGCCGAGCTCGACAT-CGTGTCGCCG 181 Query 46324 CACGTTGCGCTGATGCCAGATGCTCACGCAGGCAAGGGGTCTGCCGTGGGCACGGTGATC 46383 || | ||||||||||| || || ||| |||||||| | | || || | || ||| Sbjct 182 TACCTGGCGCTGATGCCGGACGCGCACCTGGGCAAGGGAGCGACGGTCGGTTCCGTCATC 241 Query 46384 CCCACCAAGGACGCCGTCATCCCAGCGGCCGTGGGTGTCGACATCGGTTGCGGGATG 46440 ||||||| |||||| ||||||| || || || || || |||||||| ||||||||| Sbjct 242 CCCACCAGGGACGCGATCATCCCGGCCGCGGTCGGGGTGGACATCGGCTGCGGGATG 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 312850340569011