Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031233.1 Length=50346 Score E Sequences producing significant alignments: (Bits) Value seq157980 325 1e-84 seq84561 179 1e-40 seq219746 156 1e-33 seq6603 82.4 2e-11 >seq157980 Length=2738 Score = 325 bits (360), Expect = 1e-84 Identities = 795/1187 (67%), Gaps = 62/1187 (5%) Strand=Plus/Minus Query 37029 TCATGCAGCACGCAAAGGGCAGAGCGCACACCGAGGCGTCGAAGAAGCTCGCCGAGGTCG 37088 |||| |||||||| || || | |||||| ||||||||||| || ||||| || Sbjct 2124 TCATCCAGCACGCGAAAGGTCGCGCGCACGCCGAGGCGTCGCGTCGCCTGACCGAGCTCA 2065 Query 37089 TCGAGGCCGTCATGGAGACCGG-GAAACCGGG-CTCGATCACGGTCAAGCTCACCATCTC 37146 || || ||| || ||| | |||| ||| ||||||| ||||||| ||||| Sbjct 2064 TCACCGCGGTCCGTGACCTCGGCGGGTCCGGAACTC--TCACGGTGAAGCTCAAGATCTC 2007 Query 37147 CCGCGACAAGGACCTCGCCAGCGTCGTGAAGATCGCCGACCAGGTCGCCGCGAAGATCCC 37206 |||||||||| || || || ||| ||| ||| ||| || || | | || Sbjct 2006 CCGCGACAAGAACGACGACATGGTC---AAGGTCGAGGACACCATCACCTCCTCGGCGCC 1950 Query 37207 GACCGAGCCGCGCCGCTCGATGTGGTTCCCCGACGACGACGGCCAACTCCACCGCAACGA 37266 | | || ||||| ||| |||||||| |||||||||||||| | | ||||||||| Sbjct 1949 GCGCCAGGTCCGCCGATCGCTGTGGTTCGCCGACGACGACGGCAAGTTGAGCCGCAACGA 1890 Query 37267 CCCCAGACAAACC----TCCCTCTT--CGAAGACGGACCCGTCGAGAAGAT-CCAAGCCC 37319 ||| |||| | |||| | ||| | || ||| | || || || | ||| Sbjct 1889 TCCCCGACAGCTCGAGTTCCCCCCGGCCGACGCCGACGCCGACAAGTAGCCACCCACCCC 1830 Query 37320 CGGAAGGCAACTGACCCATGACCGAC--AACTTCAACGGCCAC-CTCG------TCCAGG 37370 | ||| | ||| | | || ||| | | | |||| |||| ||||| Sbjct 1829 CACCCCGCACC--ACCTTT--CGGAAGGAACCACCATGACCACGCTCGACGAAATCCAGT 1774 Query 37371 ACGACGAGCCGCAGAAGCTCTTCCTGCT-GAC--CACCGAGGGCGTACCCGGAATTCAGC 37427 |||||||| | ||||| ||| || || || | || | | | ||| ||||||| Sbjct 1773 ACGACGAGACCCAGAAACTCGCGCTCCTCGAAGGCCCCAACGCAGCCAACGGCATTCAGC 1714 Query 37428 CGGGCGTCGGGGTCTTCGCGGCCACGACCAAGGACAAGGGCCTCGAGGTCGAGACTGTCG 37487 | |||||| || ||||| |||||||||||||| ||| || || ||| |||| Sbjct 1713 CCGGCGTCCACGTGTTCGCCGCCACGACCAAGGAGCGGGGTCTGCAGACCGACGTCGTCG 1654 Query 37488 ACCTCCGCGAGTTCATCCCTGGCGTGACCGCGTCGGCCGAGGCCGGTACCCGCCTCGTCA 37547 ||||||| ||| | | || || || ||||| |||||||||| || ||| |||||| Sbjct 1653 ACCTCCGTCAGTACGTGCCCGGGCTGCTGTCGTCGCCCGAGGCCGGCACTCGCATCGTCA 1594 Query 37548 CCGACGTGCCGTCGTTCCTCGCCGAACTCGTCCGTTACAGCATCGAT----CCCCAATTC 37603 ||||||| ||||||| || || |||| ||| |||| ||||| || | Sbjct 1593 CCGACGTCGTGTCGTTCGAGGCTGAGCTCGACCGCTACAAGCTCGATGAGACCGCG---- 1538 Query 37604 TCGACGCTGTGGGGTGACGAGACTAAGGGCCGCGTCGAAGCCATCTACAACGATCACGCG 37663 |||||||||||||||||||||| ||||||||||| | || ||||||||||| |||| | Sbjct 1537 TCGACGCTGTGGGGTGACGAGAACAAGGGCCGCGTGGTCGCGATCTACAACGACCACGTG 1478 Query 37664 AACGACGGCGCCGGCCTC---------------CGCGACAACCGGCTGCGCCTCGAACTG 37708 |||| || || ||| || ||||||||||| |||| || | || Sbjct 1477 AACGCCGCCGACGGTGTCGACGGGCACGGTCACCGCGACAACCGTCTGCAGCTGCAGCTC 1418 Query 37709 CGCGCCGACCAGGACTGGACCGCGTGGCACCAGCTGTCCGGCCAGTACCTCCGGCAGGAA 37768 || ||||| |||||||| | || |||||| || | ||||| |||| ||| |||| Sbjct 1417 CGTCCCGACGAGGACTGGGCGGCCTGGCACAAGATTTCCGGGAGGTACATCCCTCAGGCG 1358 Query 37769 GAGTTCGGCGACCGCGTCGAAGAACTCCTCCATACCGTCGTCGAGCCGGCGCAGGCCGAC 37828 |||||||||||| | |||| || ||||| || ||||| ||| || | ||||||||| Sbjct 1357 GAGTTCGGCGACATCATCGAGGACCTCCTGCACACCGTGGTCTCACCCGACCAGGCCGAC 1298 Query 37829 CTGATGGAGGTCATCGACTCGATCCGCGCGACCAGCAAGGGCAGCTTCGAGTCGAAGATC 37888 || | |||||||||||||| |||||| | || |||| || |||||||| | ||| Sbjct 1297 CTCGTCGAGGTCATCGACTCCATCCGCACCACGAGCAGCGGGGTGTTCGAGTCCACCATC 1238 Query 37889 TCCCGTGCCGACGGCGGCCAGCAGCTCGAGTACAAAGAGGACGTCTCCACCACCGCGGG- 37947 ||| | || ||| |||| |||||||| | |||||||| ||||||| || || Sbjct 1237 CGCCGCGACGTCGGTACCCAGGCGCTCGAGTTCCGCGAGGACGTGTCCACCAGTGCCGGA 1178 Query 37948 -GAAGTCCGGGCAGCTCGAGGTGCC-GAAGACCGTGACCCTCGCGATCCGCCCGTGGGAA 38005 ||| || | ||||||||||| || | || ||||| |||| |||| || Sbjct 1177 CGAACTCAATCC--CTCGAGGTGCCTCGCGAGC-TGGTGCTCGCACTCCGGCCGTACGAG 1121 Query 38006 GGGCTCGACACCTACAAGGTGGAGGGCTGGTTCCGGCTGCGCGTGCAGAACGGGCAGCTG 38065 || | || |||||| |||| || |||||||| || || || | || ||| Sbjct 1120 GGCATGGAGACCTACGAGGTCCGGGCGTGGTTCCGCCTCAAGGTCCACCAGGGATCACTG 1061 Query 38066 TCCCTCGCGATCAAGCTGAAGCCCACCCGCTCGATCCTGCGGGCCGCCTGGGCTGACGTC 38125 |||||| | ||||| || |||||| | ||||||| || ||| | ||| || Sbjct 1060 CTCCTCGCCGTGAAGCTCCGACCGACCCGCACCGTCCTGCGCCAGGCGTGGTCCGACATC 1001 Query 38126 ATCACCCAGATCGAGCAGCACCTCGACGGCAAGCCGGTCCTCGCCAC 38172 || || | |||||| || || | | |||||||||||| ||||| Sbjct 1000 GTCGCCGACATCGAG--GC-CCACACCACCAAGCCGGTCCTGGCCAC 957 >seq84561 Length=1800 Score = 179 bits (198), Expect = 1e-40 Identities = 217/290 (75%), Gaps = 18/290 (6%) Strand=Plus/Plus Query 48639 CCGTGACATGTCACACTGGTGCCAGTGACACACGTGTGTCCACAACCCTCGGCACCTAC- 48697 ||||||||||||||||||||| ||| |||||||||||||||| | |||| | ||| | Sbjct 648 CCGTGACATGTCACACTGGTGTCAGCGACACACGTGTGTCCAGA--CCTCCGAACCCAGC 705 Query 48698 -----TCAGGTGGCGGGGGTTTCGTCATTCCGGAGGCGCATCACATGCCCCGAGAAGTCC 48752 || ||| ||||||||||||| || ||||||||| ||| | ||||| | Sbjct 706 CGCCATCGGGTC-CGGGGGTTTCGTCGTTTCGGAGGCGCG----ATGAGC---GAAGTAC 757 Query 48753 CCACCCCCGACGGCATCGACTCCCTCATCACCACCACCGAAGCCGCCACCCTCTGCGGAG 48812 ||| |||||||||||| |||| || |||||||| |||| |||||| | ||| | | Sbjct 758 TCACGCCCGACGGCATCCACTCGCTGATCACCACGGCCGAGGCCGCCCAGCACTGTCGGG 817 Query 48813 TGTCCACCGCCACCGTGCGGAAATGGGTGCAGCGCAACAAGCTCGAACCGTCCGGCCTCG 48872 | ||| |||||| | || || |||||||||||| ||||| ||| || |||| || Sbjct 818 TATCCGAGGCCACCATCCGCAAGTGGGTGCAGCGCGGGAAGCTGACACCATCGGGCCGCG 877 Query 48873 A-CGACAACGGCCGCAACCTGTTCCGGCTGATCGACGTCGCCAAGGCAGA 48921 | | ||| | | |||||||||||||| ||| |||| || |||||||| || Sbjct 878 ACCCACAGC-GTCGCAACCTGTTCCGTCTGCTCGATGTGGCCAAGGCCGA 926 >seq219746 Length=1062 Score = 156 bits (172), Expect = 1e-33 Identities = 416/637 (65%), Gaps = 34/637 (5%) Strand=Plus/Plus Query 42393 GTGTACGAATCACTCGGTGGCGAAGGGCCGCAAGCGGGTTGGCTCACAGCCGGACCTGTT 42452 ||| || |||||||||| || ||||| |||||| | | | | || |||| Sbjct 24 GTGCACCCATCACTCGGTCGCCCAGGGCATCAAGCGCGCCGACAAGCGCCCCGACCCCAA 83 Query 42453 CGGCGAGATCCTTCCGGACGCGGCGTCGGAGCGGTCCCGCGCGACCATGTGGGACGTCCC 42512 ||| ||| | | || |||| || | || || || || ||||| |||||||||||| Sbjct 84 CGGGGAGGTGTTGCCCGACGACGCCGCCGAACGCTCGCGGGCGACGATGTGGGACGTCGT 143 Query 42513 GCGGTTCGCCGAGGTTCACCAGTACCGCGCCGTGATCGTCGAGAACGTTGTCGACGCGTT 42572 |||||||||||| ||||||||||| | | ||||||| ||||||||||||| || Sbjct 144 CCGGTTCGCCGAGTACCACCAGTACCGATCAATCGTCGTCGAAAACGTTGTCGACGTGTA 203 Query 42573 CCACTGG--GTTCCGTTC-CGCGCGTGGCTGATGGCGATGGACTGCCTCGGCTACGACCA 42629 |||| ||| |||| ||| ||||||| |||| |||| ||| |||||| |||| Sbjct 204 TTTCTGGCCGTT--GTTCGCGC-CGTGGCTCGCCGCGACGGACGCCCTGGGCTACAACCA 260 Query 42630 CCACATCGTCATGCTGAACTCGATGCACGCCCAGACGTTCGGGCCGGGGGCGCCGCAGTC 42689 | | ||||| ||| |||||||||||||| ||| |||||| | | ||| || || || Sbjct 261 CGAGATCGTGTGGCTCAACTCGATGCACGCGCAGCTGTTCGGTCAGCCGGCCCCTCAATC 320 Query 42690 CCGCGACCGCATGTACGTCGTGTTCTGGCACAAGGGGAACCCGCGCCCGGACCTCGGCCG 42749 | ||| | || || ||||| | | ||| | Sbjct 321 AAGGGACAGGATCTATGTCGT-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGGGCTG 379 Query 42750 CGTGGTCCGCCCGAACGCAATCTGTGCGGAGTGCGGCCCGGTCGCCGCGATGCAGGCATT 42809 || ||||| || ||| ||||| ||| || || || | | Sbjct 380 TGT-----GCCCG-------TC--------GTGTGGCCCTGTCCAGTCGGTGAAGACCTG 419 Query 42810 CAAGAAGACCGGCAGCG--CGTGGGGCCGGTACCGAGCCCAGTACGTCTACCGGTGCCCG 42867 ||| | |||| |||| ||||||||| ||||| ||||||||| | | |||||| Sbjct 420 GAAG-CGCCCGG-AGCGTCAGTGGGGCCGCTACCGCGCCCAGTACACGTTCTCCTGCCCG 477 Query 42868 AACGTGCGGTGCCGCAACGGCATCGTTGAGCCGCTGTACCGCCCGGCCGCCGACATCATC 42927 |||| | | || | || || || || | || || ||||| ||||||||| Sbjct 478 AACG---GCTCATGCGCGGCCACAGTGGAACCCGACTGGCGACCCGCCGCAGACATCATC 534 Query 42928 GACTGGACACTCGAAGGCCAGCGAATCGGCGACCGCACCCGCCCACTCGCCGCGAAGACG 42987 |||||| | || ||| || ||||| ||||||| ||||| || |||| |||||| Sbjct 535 GACTGGTCGCTGCCCGGCACCCGCATCGGTGACCGCAAACGCCCGCTGGCCGAGAAGACC 594 Query 42988 ATGGCGCGCATCCAGGCCGGGATCGATCGCTACTGGG 43024 ||| | || ||||||||||||||||| |||||||||| Sbjct 595 ATGACCCGTATCCAGGCCGGGATCGACCGCTACTGGG 631 >seq6603 Length=23608 Score = 82.4 bits (90), Expect = 2e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 14226 GGCGGTGTCATGCCCGGCTACACCCCGGGCCGCGACGTGCACCACTTCGCCTCACCGACC 14285 || ||||| |||| |||||| |||| ||| |||| ||| ||||| ||| || || Sbjct 5989 GGTGGTGTGCTGCCGGGCTACTCCCCTGGCTTCGACAACCACACCTTCGTCTCCCCCACT 5930 Query 14286 GGTGGCAATCTCGCGCTGTCGGGTGGCGAGGCGATCATGCGGCCGGAATGGAC 14338 |||||| || ||||| |||||||||||||||||||| ||||| ||||| Sbjct 5929 GGTGGCGTGCTGCACCTGTCCGGTGGCGAGGCGATCATGCGCCCGGAGTGGAC 5877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160455899320568