Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031247.1 Length=50636 Score E Sequences producing significant alignments: (Bits) Value seq268996 372 1e-98 seq227914 302 1e-77 seq170967 116 1e-21 seq46609 100 9e-17 seq249899 95.1 4e-15 seq184310 95.1 4e-15 seq272250 87.8 6e-13 seq139445 86.0 2e-12 >seq268996 Length=1099 Score = 372 bits (412), Expect = 1e-98 Identities = 696/1014 (69%), Gaps = 25/1014 (2%) Strand=Plus/Plus Query 6608 GTACAAGAACTGGAGCATCTGA-CATGGCCGGAATCTCGCAGGTCACCAAGGGCGGGCCG 6666 |||||||| |||| ||||| |||| |||||||| | |||||||||| || || ||| Sbjct 45 GTACAAGAGCTGGGAGTTCTGATCATGTCCGGAATCGCACAGGTCACCACCGGTGGCCCG 104 Query 6667 AAGACCTTCACGCCGGCATCCGGCGTCACCATCCTGGGCGGCACCGTGGTCGAGGCACGC 6726 ||||||||||| || || ||| | |||||| |||||| | |||||||| ||| Sbjct 105 AAGACCTTCACCCCCGCCAACGGGGAGACCATCTACGGCGGCCTGCTCGTCGAGGCCCGC 164 Query 6727 GCCGCTGGGCGTATCGGTCCGGCCGCGGCCGGCTCGCTCAAGGTGCTGGGCGTCGCACTG 6786 ||| | || ||||| |||||||| ||| ||||||||||| || ||||||||| Sbjct 165 GCCAACAGTCGCATCGGCGTCGCCGCGGCGGGCAGCCTCAAGGTGCTCGGTGTCGCACTG 224 Query 6787 ACCGACGCGCTCGCACCCGAACAGTTCC-CGCCGGCCGACACGACCGACGCACTCGGTCG 6845 |||||||| |||| ||||||||| | | ||| || | || ||||| |||| || Sbjct 225 ACCGACGCCATCGCCCCCGAACAGGTGGTCACCGACCCCGTCAAC-GACGCGATCGGGCG 283 Query 6846 CACCGTCGTGTCCGCGGTCCCGATCCCGACCAACGTCGCCGTTGCGTACGCCGGCACCGA 6905 |||| | | |||||| | |||||||| ||| ||||| ||||||||||||||||| Sbjct 284 TCCCGTGCTCGCTGCGGTCGCCATCCCGACGCGCGTGGCCGTCGCGTACGCCGGCACCGA 343 Query 6906 GGTTCGGGTCAAGTTCGCGGCTGCCGCGCAGTTCGGTGACCGGCTCAAGGCCGGCGCCAA 6965 ||| ||| | | | |||| || || ||||| ||| |||| ||| ||| Sbjct 344 GGTCAAGGTGACCTACTCGGCCGCAGCCGGTTTCGGCGACAAGCTCGTCGCCACCGCGGC 403 Query 6966 CGGCACCGCGGTTCCCGCGGCCGAGACCGACGACGCGCGCGCGATCTTCGCCGTGTGCAC 7025 ||||| | | ||||| | | ||| ||| | ||| ||||| ||| | ||||| Sbjct 404 CGGCAAGGTCGGCCCCGCCGGAGCGACACCCGATCCCCGCACGATCGTCGGTATCTGCAC 463 Query 7026 CGACCCCGCCGGCGTCGCGAATG-GCGCAAC--CGGCCTGATCCGCATCCTCTGACAG-- 7080 ||| || ||||| ||||| | | ||| | || ||| || || ||| |||||| | Sbjct 464 CGAACCGGCCGGTGTCGCCGCGGCGAGCACCGTCGCCCTCATGCGGATCATCTGACCGCC 523 Query 7081 ----------AA----AAGGACTACCTCACATGGCAACCAGCATCGTGAGTATCAGCGAC 7126 || ||||| || | ||||| | || | ||||| | |||| Sbjct 524 CAACACACGAAACAGCAAGGAGCACAAC-CATGGTGAACAAAGTGGTGAGCGTGTCCGAC 582 Query 7127 GGTTCGCGTCTCACCGTCTCCGATCTCATCAAGAACCCGCTCATGGTGCCCACGAAGATG 7186 || || | ||||| || || || || || || | | | ||||| ||| | Sbjct 583 GGCGGTCGGTTGACCGTGTCGGACCTGGTCGGGAGTCCCATGTGGATTCCCACCAAGCTC 642 Query 7187 AAAGAGCTGATCGAGAATCAGTTCATCTCCGAGGCACTGTTTCGCAACGGCGGCGCCAAC 7246 || |||||||| | |||||||||||| |||| ||||||| ||||||| |||| | ||| Sbjct 643 AAGGAGCTGATGGTCAATCAGTTCATCAGCGAGACACTGTTCCGCAACGCCGGCCCGAAC 702 Query 7247 CCGTCGAGCGTCGTCGGGTTCCGCGAAGGCGATCCGACGTTCCTCGACCAGGACATCCAG 7306 || | || |||| | ||||| ||||| ||| |||||||||| | ||| | ||| Sbjct 703 CCCAACGGGATCATCGGCTATCGCGAGGGCGACCCGCTGTTCCTCGACGACGACGTGCAG 762 Query 7307 GACGTCGCCGAGTTCGGCGAGATCCCGGTGTCGTCCGGTCAGCTCGGCATCCCGCGCGTG 7366 |||||||||||||||||||||||||| || || ||| | ||| ||||||| Sbjct 763 GACGTCGCCGAGTTCGGCGAGATCCCCGTCAGCTCGGGTGCACGGGGCGTCCCGCGTACC 822 Query 7367 GCGTACGCCATCAAGCGCGCACTCGGCATCCAGGTGTCGAAGGAGATGGTCGACGAGAAC 7426 || ||||| ||||| || | ||| | | || |||||||||||| ||||||||||| Sbjct 823 GCCTACGCGGTCAAGAAGGCGTTGGGCGTGCGCGTCTCGAAGGAGATGATCGACGAGAAC 882 Query 7427 GACATCGACGCCGTCAACAAGCAGATGACCGGTCTCAAGAACACGTTCATCCGCGCGAAC 7486 |||||| | || | |||||||| | | ||||||| ||||||||||| ||| Sbjct 883 AACATCGGTGAGGTGCAGCGTCAGATGACGGCGTTGCAGAACACCTTCATCCGCGCCAAC 942 Query 7487 GACCGACAGGCCAAGACGCTGCTGCAGGCCGGCGGCGTTC-CGTCGATGCCCGTCTCGGC 7545 ||||| ||| ||| | | ||||| | |||||||| || | || || ||| | | Sbjct 943 GACCGTGCGGCGAAGGCCATCCTGCA-GTCGGCGGCGGTCGACACCATCCCGGTCACCAC 1001 Query 7546 TGCGTGGGACACCGCCGGCGGCAAGCCTCGCACCGACATCGCCCGCGGCATCGA 7599 || ||||| ||| |||||||| |||||||||||| || | |||||| Sbjct 1002 CGCCTGGGATCAGACCGCGGGCAAGCCGCGCACCGACATCACCAAGGCCATCGA 1055 >seq227914 Length=424 Score = 302 bits (334), Expect = 1e-77 Identities = 294/379 (78%), Gaps = 15/379 (4%) Strand=Plus/Plus Query 7652 TTCGAACCGAACACGATCGTCGTCAACTCGGGTCTGCTGCCCGTCCTCATGGACAACGAG 7711 ||||| || ||||| || |||| | || |||||||||| | ||| ||||||||||| Sbjct 1 TTCGAGCCCAACACCATGGTCGCCCACCCGGGTCTGCTCGCGACCCTGATGGACAACGAC 60 Query 7712 CAGATCCTCAAGGTCTACAACGGCAACGTGGCGAACGAGTCGATCGCCTACACCGGCGCG 7771 | ||||||||| |||||||||||||||| || || |||||||||||||||| || | | Sbjct 61 AACATCCTCAAGATCTACAACGGCAACGTCGCCGACCAGTCGATCGCCTACACGGGGGTG 120 Query 7772 CTGCCCGGTGACCTGCTGGGCCTGACCGTCATCAAGTCGCGCACGTTCCCCGCCGACCGG 7831 | || || | || |||||| | |||||||| | |||| | | Sbjct 121 TTCCCGGGCCAGCTCTACGGCCTGGACATCATCAAGNNG---ACGT----------CGGT 167 Query 7832 GTGCTGCTGCTCGAGCGCGGCACGATCGGGTTCTACTCCGACACCCGGCCGCTGCAGTTC 7891 |||| | || ||||||||||| | ||||||||| |||||||||||||| |||||||| Sbjct 168 GTGCATC--CTGGAGCGCGGCACCGTGGGGTTCTACACCGACACCCGGCCGTTGCAGTTC 225 Query 7892 ACCGAGCTCTACCCGGAGGGCAACGGGCCGAACGGTGGTCCGCGTGAGACGTGGCGCTCG 7951 |||| || ||||||||||||||||| || ||||| |||||||| ||| ||||||||||| Sbjct 226 ACCGGCCTTTACCCGGAGGGCAACGGCCCCAACGGCGGTCCGCGCGAGTCGTGGCGCTCG 285 Query 7952 GACGCGTCGCACAAGCGCGCGATGGGGCTCGACCAGCCCAAGGCGGGCCTCTGGCTGACC 8011 ||||| ||||||||||| | || |||||||| ||||||||||| | | ||||||||| Sbjct 286 GACGCCTCGCACAAGCGGGTCATCGGGCTCGATCAGCCCAAGGCCGCGGTGTGGCTGACC 345 Query 8012 GGGCTGGTGACGCCGTGAC 8030 ||| ||||||| ||||||| Sbjct 346 GGGGTGGTGACCCCGTGAC 364 >seq170967 Length=653 Score = 116 bits (128), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 10062 CGATCACCGACGAC---TGGCCGACCGACTGGAAGTACGTCGGTCTGCTCAAGGGCGACA 10118 ||| | |||||| | |||||| ||| |||||| | |||||| ||||| ||||||| Sbjct 631 CGACCGCCGACGCCGCGTGGCCGGCCGCATGGAAGCCGGCCGGTCTCCTCAACGGCGACA 572 Query 10119 GTGGGTTTC-AGGACTCGCGCGAGTGGTCGGAAACCGACATCCCCGCGTGGGGCTACGGC 10177 ||||||| |||| ||| || |||| || ||| | ||||||||||||||||||| Sbjct 571 A-GGGTTTCGAGGAGTCGTCCGCGTGGGACGAGACCAAGCACCCCGCGTGGGGCTACGGC 513 Query 10178 ACCGTCAAGGTCTCGAGCAAGGATTTCAAGGACACCCGGAAATTCACCGCGATCGAGGAC 10237 | | ||||| | |||||| ||| || |||||||| |||||| || |||||||| Sbjct 512 ATCATCAAGACCGGCTACAAGGACTTCGAGATGACCCGGAAGTTCACCACGCTCGAGGAC 453 Query 10238 AACGAGACCACG 10249 ||| ||||||| Sbjct 452 AACCCGACCACG 441 >seq46609 Length=4533 Score = 100 bits (110), Expect = 9e-17 Identities = 180/260 (69%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 4681 CTCGCGCACTTCCTCAACCTGGCCGGCGGCGGT------GGTTCGTACGCGCTCGCGTCG 4734 |||||||||||||||| ||| | ||| | | || ||||||||||||| ||| Sbjct 1084 CTCGCGCACTTCCTCACCCTCGGCGGTGACAACTCGACCGGGTCGTACGCGCTCGGGTCA 1025 Query 4735 GTGCAGGCCGACACGTTCGCGCAGGCCGTGCAGACACACGCCGAAGCGATCCGA--GACG 4792 |||||| |||| ||| | | ||| | | ||||| || | | | || Sbjct 1024 ACCTTCGCCGACTTCTTCGTCCAGTCGCTCCAGGCGGT-GACGAAG-GAGCTGGTCGGCG 967 Query 4793 TGTTCAACGCGCACGTGATCGAGGATCTTGTCGACGTCAACTGGGGGCCTGACGAGCCGG 4852 || ||||| |||||||||||||||||| ||||||| |||||||| || || ||||||| Sbjct 966 TGATCAACCAGCACGTGATCGAGGATCTCGTCGACGCGAACTGGGGCCCGGAGGAGCCGG 907 Query 4853 CGCCGCGGCTGGTGTTCGACGCGATCGGTTCCGAACAGGACGCGACCGCGGCGGCTCTCA 4912 | || |||||| ||| | | |||||| || |||| | ||| | | || | || Sbjct 906 CCCCCCGGCTGACCTTCCAGGAGATCGGCACCCGGCAGGCCCTCACCCCCGAGGGTGTCC 847 Query 4913 TGGCGCTGGTGCAGGCCGGC 4932 ||||||| ||||| ||||| Sbjct 846 GGGCGCTGATGCAGTCCGGC 827 >seq249899 Length=916 Score = 95.1 bits (104), Expect = 4e-15 Identities = 112/150 (75%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 4323 GATCCCGGTCGACCGGTTGGTCGTCTACACGCGCGACATGGAACCCGGTTTCTGGATCGG 4382 ||||||||| |||||| |||| || ||| || | | | | ||||| |||||||| Sbjct 431 GATCCCGGTGGACCGGCTGGTGGTGTACGTGCACAAGCAGCAGCCCGGGAAGTGGATCGG 372 Query 4383 CAAATCGCTACTGCGGCCGTCGTACAAGCACTGGCTCATCAAGGACGAGTTGCTGCGCAT 4442 ||||| |||||| || ||||||||||| | || |||||||||| || ||||||| Sbjct 371 ACGGTCGCTGCTGCGGTCGGCGTACAAGCACGTGGTCCTCAAGGACGACCTGATGCGCAT 312 Query 4443 CCAGGCG--GCTGCCATTCGCCGTAACGGC 4470 | ||||| |||| | |||||| |||||| Sbjct 311 CGAGGCGGTGCTGGC--TCGCCGCAACGGC 284 >seq184310 Length=1059 Score = 95.1 bits (104), Expect = 4e-15 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 4364 AACCCGGTTTCTGGATCGGCAAATCGCTACTGCGGCCGTCGTACAAGCACTGGCTCATCA 4423 |||| || | |||||||| ||| | ||||| ||| | |||||||||||||| || | Sbjct 530 AACCGGGATCGTGGATCGGGCGGTCGATGCTGCGTCCGGCCTACAAGCACTGGCTGATGA 589 Query 4424 AGGACGAGTTGCTGCGCATCCAGGCGGCTGCCATTCGCCGTAACGGCATGGGCGTGCCCG 4483 ||||||| |||| |||| ||| ||| | || || || |||||| ||||| |||| | Sbjct 590 AGGACGACCTGCTCCGCACCCACGCGACGATGATGCGTCGCAACGGCCTGGGCATGCCGG 649 Query 4484 TC-GCGACCGGCGCCGAGGGCGCAACCGACGCCGACCTC 4521 || ||| ||||||||||| |||||| ||||| || Sbjct 650 TCTACGA-GAATGCCGAGGGCGCGACCGACACCGACATC 687 Score = 84.2 bits (92), Expect = 7e-12 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 4797 CAACGCGCACGTGATCGAGGATCTTGTCGACGTCAACTGGGGGCCTGACGAGCCGGCGCC 4856 |||| |||| | ||||||| || || ||| |||||||| || ||||||| ||| || Sbjct 933 CAACCAGCACATAGTCGAGGACCTCGTTGACTGGAACTGGGGACCCGACGAGCAGGCACC 992 Query 4857 GCGGCTGGTGTTCGACGCGATCGGTTCCGAACAGGACGCGACCGCGGCGGCTCTCATGG 4915 || |||||||||||||| ||||||||| | || | |||| || | ||| |||| || Sbjct 993 GCTGCTGGTGTTCGACGAGATCGGTTCGCAGCACGCCGCGGTGGCCGAGGCACTCAAGG 1051 >seq272250 Length=510 Score = 87.8 bits (96), Expect = 6e-13 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 7703 GACAACGAGCAGATCCTCAAGGTCTACAACGGCAACGTGGCGAACGAGTCGATCGCCTAC 7762 ||||||||| || |||||||||||||||| | | || | | |||| ||| |||| Sbjct 15 GACAACGAGGAGTTCCTCAAGGTCTACAAGGACTCGCTGTCCACCGAGGACATCCGCTAC 74 Query 7763 ACCGGCGCGCTGCCCGGTGACCTGCTGGGCCTGACCGTCATCAAGTCGCGCACGTTCC-- 7820 |||||| ||| ||| | | | || | | || || || ||| |||| |||| Sbjct 75 ACCGGCAAGCTACCCCGCAAGGTCCTCGACATGGACGCGATGAAGCCGCG---GTTCTGG 131 Query 7821 CCGCCG-ACCGGGTGCTGCTGCTCGAGCGCGGCACGATCGGGTTCTACTCCGACACCCGG 7879 |||| | |||| || ||| |||||||| | || || ||||||||||| ||||||||| Sbjct 132 CCGCGGGACCGCGTCCTGGTGCTCGAGGGTGGAACCGTCGGGTTCTACAGCGACACCCGC 191 Query 7880 CCGCT 7884 ||||| Sbjct 192 CCGCT 196 >seq139445 Length=1680 Score = 86.0 bits (94), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 11/192 (6%) Strand=Plus/Plus Query 6605 CGTGTACAAGAACTGGAGCATCTGA--CATGGCCGGAATCTCGCAGGTCACCAAGGGCGG 6662 || |||| ||||||||||| ||| |||| | | | |||||||||||| | || Sbjct 1483 CGCGTACGAGAACTGGAGC---TGAATCATGAGTGCAGTGGTACAGGTCACCAAGAGTGG 1539 Query 6663 GCCGAAGACCTTCACGCCGGCATCCGGCGTCACCATCCTGGGCGGCACCGTGGTCGAGGC 6722 |||||| ||||||| || || || |||| || | |||||| | |||||||| Sbjct 1540 CCCGAAGCCCTTCACCCCCGC---CGAGGTCATCACC---GGCGGCCAGATCGTCGAGGC 1593 Query 6723 ACGCGCCGCTGGGCGTATCGGTCCGGCCGCGGCCGGCTCGCTCAAGGTGCTGGGCGTCGC 6782 ||||||||| || ||||| ||||| ||||| ||| ||| || |||||||| Sbjct 1594 ACGCGCCGCCTCCCGGATCGGAGTGGCCGGTGCCGGATCGGCGAAGTCCCTCGGCGTCGC 1653 Query 6783 ACTGACCGACGC 6794 ||||||||||| Sbjct 1654 GCTGACCGACGC 1665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161380845865908