Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031252.1 Length=51290 Score E Sequences producing significant alignments: (Bits) Value seq248049 187 8e-43 seq153771 170 6e-38 seq136878 161 3e-35 seq226360 129 2e-25 >seq248049 Length=1043 Score = 187 bits (206), Expect = 8e-43 Identities = 247/335 (74%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 30898 ATGGCCGGTGAAACAACGATCACAGTGATCGGAAACCTGACGAACGATCCAGAGCTACGG 30957 ||||| || || || | ||||| ||| |||| ||||||||| |||||| ||||| || Sbjct 553 ATGGCAGGCGACACCATCATCACGGTGGTCGGCAACCTGACGGCCGATCCCGAGCTGCGC 612 Query 30958 TTCACGCCGTCTGGCAGCGCTGTCGCGAACTTCACGATCGCGAGCACACCGCGAACGTTC 31017 ||||| | || ||| || || ||||||||||| |||| || || || ||| || Sbjct 613 TTCACCGCCTCCGGCGCGGCCGTTGCGAACTTCACCGTCGCATCGACCCCCCGGACGCTC 672 Query 31018 GATCG-ACAGTCAAACGAGTGGAAAGACGGCGAGACGCTCTTCCTGCGC-GCTGCTGTCT 31075 || || || | ||||||||| ||||||||| | |||||||||||| || | ||| Sbjct 673 GACCGCACCAGCGG-CGAGTGGAAGGACGGCGAGGCCCTCTTCCTGCGCTGCAACA-TCT 730 Query 31076 GGCGCGAGACTGCAGAGAATGTCGCAGAGTCCCTGCAGAAGGGCATGGAG-GTCATCTGC 31134 |||| || |||| ||||| ||| | ||||| || || | | | | |||||| | Sbjct 731 GGCGGCAGGCTGCCGAGAACGTCACGGAGTCGCT-CACCCGCGGCTCCCGCGTCATCGTC 789 Query 31135 GTCGGGCGTCTGAAGTCGCGCAGCTACGAGACGAAAGAGGGCGAGAAGCGCACTGTCATC 31194 ||| || || ||| |||||||| |||||| || || |||||||||||||| |||||| Sbjct 790 ACCGGCCGGCTCAAGCAGCGCAGCTTCGAGACCAAGGAAGGCGAGAAGCGCACCGTCATC 849 Query 31195 GAGCTCGAAGTCGACAGCATCGGCCCGTCGCTGCG 31229 ||||| || |||||| |||||||| |||||||| Sbjct 850 GAGCTGGAGGTCGACGAGATCGGCCCCTCGCTGCG 884 >seq153771 Length=831 Score = 170 bits (188), Expect = 6e-38 Identities = 213/286 (74%), Gaps = 6/286 (2%) Strand=Plus/Minus Query 30926 TCGGAAACCT-GACGAACGATCCAGAGCTACGGTTCACGCCGTCTGGCAGCGCTGTCGCG 30984 |||| ||||| | ||| ||| || ||||| ||||||||||| || ||| ||| ||||| Sbjct 418 TCGGCAACCTCGTCGA-CGACCCCGAGCTGCGGTTCACGCCCTCGGGCGCCGCAGTCGCC 360 Query 30985 AACTTCACGATCGCGAGCACACCGCGAACGTTCGATCGACAGTCAAACGAGTGGAAAGAC 31044 |||||| ||||| ||| ||||| |||||| | || ||| | ||||| ||| | ||| Sbjct 359 AACTTCCGCATCGCCTCCACCCCGCGCACGTTCAACCGTCAGACCAACGACTGGGAGGAC 300 Query 31045 GGCGAGACGCTCTTCCTGCGCGCTGCT--GTCTGGCGCGAGACTGCAGAGAATGTCGCAG 31102 || ||| | ||||| | | ||||| || ||||| || | || ||||| ||||| | Sbjct 299 GGTGAGGGCATGTTCCT-CAC-CTGCTCGGTGTGGCGTCAGGCGGCCGAGAACGTCGCGG 242 Query 31103 AGTCCCTGCAGAAGGGCATGGAGGTCATCTGCGTCGGGCGTCTGAAGTCGCGCAGCTACG 31162 ||||| ||||| |||||| ||| || | || || || |||||||||| ||||| Sbjct 241 AGTCCTTGCAGCGCGGCATGCGCGTCGTCGTCCAGGGACGGCTCAAGTCGCGCACCTACG 182 Query 31163 AGACGAAAGAGGGCGAGAAGCGCACTGTCATCGAGCTCGAAGTCGA 31208 |||| ||||||||||||||||| ||| ||||| |||| ||||| Sbjct 181 AGACCCGCGAGGGCGAGAAGCGCACCGTCTTCGAGATCGAGGTCGA 136 >seq136878 Length=1830 Score = 161 bits (178), Expect = 3e-35 Identities = 238/332 (72%), Gaps = 4/332 (1%) Strand=Plus/Minus Query 30898 ATGGCCGGTGAAACAACGATCACAGTGATCGGAAACCTGACGAACGATCCAGAGCTACGG 30957 |||||||| || || | |||| || ||||| |||||||| ||||| || || || Sbjct 405 ATGGCCGGCGACACGATCCTCACCGTCATCGGGAACCTGACCGCGGATCCCGAACTGCGT 346 Query 30958 TTCACGCCGTCTGGCAGCGCTGTCGCGAACTTCACGATCGCGAGCACACCGCGAACGTTC 31017 ||||| ||||| || || || || |||||||| | ||| ||| ||||| | |||| Sbjct 345 TTCACCCCGTCCGGTGCGGCGGTGGCCAACTTCACCGTTGCGTCCACGCCGCGGATGTTC 286 Query 31018 GATCGACAGTCAAACGAGTGGAAAGACGGCGAGACGCTCTTCCTGC-GCGCTGCTGTCTG 31076 || || ||| | ||||| ||||||||||||||| | || ||| ||| | || || |||| Sbjct 285 GACCGTCAGACCAACGAATGGAAAGACGGCGAGGCACTGTTCATGCGGTGCAGC-ATCTG 227 Query 31077 GCGCGAGACTGCAGAGAATGTCGCAGAGTCCCTGCAGAAGGGCATGGAGGTCATCTGCGT 31136 ||| ||| | || ||||| || || ||| ||| ||||| |||||| | || Sbjct 226 GCGGGAGGCGGCCGAGAACGTGGCGGAGAGCCTCACCAAGGGTGCTCGTGTCATC-GTGT 168 Query 31137 CGGG-CGTCTGAAGTCGCGCAGCTACGAGACGAAAGAGGGCGAGAAGCGCACTGTCATCG 31195 |||| || || ||| |||| |||||| || ||||| ||||||||||| || ||| Sbjct 167 CGGGTCGGCTCAAGCAGCGCTCCTACGAAACCCGCGAGGGTGAGAAGCGCACGGTGGTCG 108 Query 31196 AGCTCGAAGTCGACAGCATCGGCCCGTCGCTG 31227 ||||||| ||||| |||| || |||||| Sbjct 107 AGCTCGAGGTCGAGGAGGTCGGTCCCTCGCTG 76 >seq226360 Length=376 Score = 129 bits (142), Expect = 2e-25 Identities = 226/326 (69%), Gaps = 24/326 (7%) Strand=Plus/Plus Query 30899 TGGCCGGTGAAACAACGATCACAGTGATCGGAAACCTGACGAACGATCCAGAGCTACGGT 30958 ||||||| || || | ||||| ||| |||| ||||||||| ||| || ||||| || | Sbjct 7 TGGCCGGCGACACGATCATCACGGTGGTCGGCAACCTGACGGCCGACCCGGAGCTGCGCT 66 Query 30959 TCACGCCGTCTGGCAGCGCTGTCGCGAACTTCACGATCGCGAGCACACCGCGAACGTTCG 31018 ||||| | || ||| || ||||||||||| ||||| ||||| || || | Sbjct 67 ACACGCAGAGCGGGCTCGCCGTGGCGAACTTCACCATCGCCAGCACCCCCCGCANN---- 122 Query 31019 ATCGACAGTCAAACGAGTGGAAAGACGGCGAGACGCTCTTCCTGCGCGC-TGCTGTCTGG 31077 |||||||| ||||||||| | || ||||| || || | ||| |||| Sbjct 123 --------------GAGTGGAAGGACGGCGAGGCCCTGTTCCTCCGGGCCTCCTG-CTGG 167 Query 31078 CGCGAGACTGCAGAGAATGTCGCAGAGTCCCTGCAGAAGGGCATGGAGGTCATCTGCGTC 31137 || ||| || ||| | ||||| | ||| ||| ||||||| |||||| ||| Sbjct 168 CGTGAGTTCGCCGAGCACGTCGCCGGGTCGCTGACCAAGGGCAGCCGCGTCATC-GCGCA 226 Query 31138 GGGC-GTCTGAAGTCGCGCAGCTACGA-GACGAAAGAGGGCGAGAAGCGCACTGTCATCG 31195 |||| | |||||| |||| |||||| ||| || ||| | |||||||| | |||| Sbjct 227 GGGCCGCCTGAAGCAGCGCTCCTACGACGACCGC-GATGGCAACAAGCGCACCGCGATCG 285 Query 31196 AGCTCGAAGTCGACAGCATCGGCCCG 31221 ||||||| |||||| ||||||||| Sbjct 286 AGCTCGAGGTCGACGAGATCGGCCCG 311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163466759799192