Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031255.1 Length=46895 Score E Sequences producing significant alignments: (Bits) Value seq243147 172 2e-38 seq180939 134 4e-27 seq136770 122 3e-23 seq210609 93.3 1e-14 >seq243147 Length=590 Score = 172 bits (190), Expect = 2e-38 Identities = 356/521 (68%), Gaps = 9/521 (2%) Strand=Plus/Plus Query 6719 GAACACCGCGCCGCACGA-GGACTGGGTCGAGTACGCGGTTTCCACCGGTCTCGATCGCA 6777 ||||||||||||| ||| || |||||| ||| || ||| || || || Sbjct 30 GAACACCGCGCCG-ACGCCGGTGCTGGTCGACTACATCGTGTCCCAGGGCACCGCGCGTG 88 Query 6778 CCGAGGCCGCGGCCATGGAGCGCGCCGAGCTGATCAAGGCGCTGTCGTGAGCGAGGGCGC 6837 ||||||||| ||| ||| ||||| || ||||||| ||||||| |||||| | || | Sbjct 89 CCGAGGCCGAGGCGATGAGTCGCGCGGACCTGATCAGGGCGCTGGCGTGAGTGGTGGGGG 148 Query 6838 GCCGTTCGTGACAGTCACCGAACTGGCCGCGAGC-TGGCGCGCCCTCACCACTCAGGAGC 6896 | |||| |||| | || | | | | | || |||||| |||||||| || ||| Sbjct 149 GGCGTTTCTGACCG-CAGAGCAGTTTCAGTCTGCGTGGCGCCCCCTCACCCGCGAGCAGC 207 Query 6897 AGACCTACGCCACCGATCTGCTGAATGCGGCCGCTGAGAAGATCCGCGCCGAGTACCGCA 6956 | |||||| | || || || |||| | ||| ||| || | ||||||||||| Sbjct 208 TGGTGTACGCCGCGGACTTGTTGGCGTCGGCGGGTGACTGGATTCGAGACGAGTACCGCA 267 Query 6957 AGGCCTTCGCCGCCGAGATCGAACAGTCGAATCCGGCGGCACGCACGGTCTCGATCGACA 7016 ||||| | | ||| |||| | | || | ||||| || ||||| ||||||||| Sbjct 268 AGGCCAAGGGTGTCGACATCGCCGACACCAACGCCGCGGCCCGAACGGTGTCGATCGACG 327 Query 7017 TGGTCAAGACCGCGATTCAGACCGGCGCGTACGTCGGGCACATTCAG-TACGGCCGCATC 7075 |||| ||||| ||||| ||||||||| || || |||| |||| ||| |||| | Sbjct 328 TGGTGAAGACTGCGATCTCGACCGGCGCCTATCAGGGCCACA-TCAGCTACAACCGCGTG 386 Query 7076 GAGGGCCAGCGGCAGAAGTCCGGCCGGCTCCTCAACCCCGGCGGCGCCCTGGTGCTCACC 7135 || || | ||||||||||| || || |||| || || || || ||| | ||||| Sbjct 387 GAAGGTCCCCGGCAGAAGTCGGGTGTCCTGATCAATCCGGGTGGGGCGCTGTCGTTCACC 446 Query 7136 GACTACCACCGCGAGCAGCTGGGCATCCCGACTCGGGCGCTCGCGCAGGCCTGTTTCGAC 7195 |||| ||| ||||||||||||||| | || || ||||| |||||| | || Sbjct 447 GACTGGCACAAGTCGCAGCTGGGCATCCCCATTCACGCTCTCGCACAGGCCACGTGGGAG 506 Query 7196 GACGCGAGTGATGCTCGGTTCTGAAAC---CTGCGTGCTCG 7233 ||| | ||||||||||| |||| || | |||||||| Sbjct 507 GACACTCCTGATGCTCGGTACTGAGACGGTCGTCGTGCTCG 547 >seq180939 Length=538 Score = 134 bits (148), Expect = 4e-27 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 778 CTGGACGCACCCGTCGTGCTGCCTGATCGTTCCCCGCCAGTCGGGGAAGTCTGAGCTGCT 837 ||||||||||||| ||||||| ||||||| || || ||| || ||||| ||| | || Sbjct 218 CTGGACGCACCCGGAGTGCTGCTTGATCGTCCCGCGGCAGAACGGTAAGTCCGAGGTTCT 159 Query 838 GATCCTCCGGTGCCTGTACGGGCTGCTCGCGCGCGGCGAGAAGATCATCTTCACCACTCA 897 | | || ||||||||||||||| || ||| |||||||||||| || | ||||| || || Sbjct 158 GTTGCTGCGGTGCCTGTACGGGATGTTCGTGCGCGGCGAGAACATTGTGTTCACGACGCA 99 Query 898 GCGCTGGGAGACTGCACTCGAGCTCGGCGA-GCGCATGATCGCGATGATCAACGACCGGC 956 ||| ||| |||| |||| ||| |||| ||| | | ||| |||||||||| || | Sbjct 98 GCGGTGGAAGACAGCACGACTGCT-GGCGCTGCGGTTCAACGCCATGATCAACGCGCGCC 40 Query 957 CATCGTTGAAACGCCGCCTGGCCACGAAGCCGACGA 992 | ||| | || | || || | ||||||||||| Sbjct 39 CGTCGCTCAAGGCCAAGCTCGCGAAGAAGCCGACGA 4 >seq136770 Length=900 Score = 122 bits (134), Expect = 3e-23 Identities = 207/296 (70%), Gaps = 8/296 (3%) Strand=Plus/Plus Query 1119 TCGACCTGATCGTCTACGACGAGGCGTACAACCTCACCAGCGGGCAACGGTCA-GCGCTC 1177 |||||||| | ||||||||||||| |||||| ||||| |||| || | | ||||| Sbjct 13 TCGACCTGCTGATCTACGACGAGGCCTACAACGTCACCGGCGG-CATGGAAGATGCGCTG 71 Query 1178 GCGTGGACCCAGATGGCCGCGGACTCCACGCAGAAGATCTACACCTCCAGCGCTGTCGAC 1237 | ||| | |||||||||||| || | |||||| ||||||||| | || ||| || Sbjct 72 GACTGGGCGCAGATGGCCGCGAACAACCCGCAGACCATCTACACCAGCTCGGCGGTCAAC 131 Query 1238 GAACTCGAGCACCCGAAGGGCCACGCGCTCGCCGGCATCCGGCGCCGCGGACTCGCCAAG 1297 | | ||||| || || || | || || | || || || ||||| ||||| || Sbjct 132 GCCCAGATCCACCCCAACGGACAGACACTGGCGCGGATGCGCCGGCGCGGCCTCGCGAAA 191 Query 1298 GGCCGCGGCCTGGCCTTCCGCGAGTACATGGCACCGCCCGCG---CTGCCCTGGAATTCC 1354 |||| | | | |||| ||||| ||||| |||||| | || ||||| | || Sbjct 192 GGCCCCCGGTTCTACTTCGCCGAGTTCATGG---CGCCCGAGGACATGGCCTGGGACTCG 248 Query 1355 CACGAGGCCGCGCGGTACGCATGCCCGAGCTACGGCGTGATCCAGACCGACGACAA 1410 |||| |||| ||| || ||| ||||||||||| |||||||||||||| || Sbjct 249 TTCGAGACCGCACGGATGGCCAACCCCAGCTACGGCGTCATCCAGACCGACGAGAA 304 >seq210609 Length=1060 Score = 93.3 bits (102), Expect = 1e-14 Identities = 212/315 (67%), Gaps = 13/315 (4%) Strand=Plus/Minus Query 13431 GAACGTCATAGTCC-CAGCGTGGAACGGCATCAAGGCCGCGATCGGTGTC----GCATGG 13485 |||| || | |||| | || ||| ||||||||||| |||| ||||| || ||| Sbjct 805 GAACATCGT-GTCCGCGGCCTGGGACGGCATCAAGATCGCG----GTGTCCGCGGCGTGG 751 Query 13486 ACAC---TGATCAAGGGCTACTTCTCGGTGTGGATGGCGGTGATCCGCGCCCTCGCTGGC 13542 ||| |||||||| | | || | || ||||| | | | || | ||| | | Sbjct 750 ACAGGAGTGATCAAGCCCGCCGTCGACGCGTTCATGGCCGGGCTGCGGTTCGTCGGCGAC 691 Query 13543 GTGGTGATGTGGCTGTGGAACAACATCGTCTCCCCCGCGTTCAACGGAATCAAGGCCGTA 13602 | | || |||||| ||||||||| || |||||||||||||| ||| |||| Sbjct 690 GCCGCGACGTGGCTATGGAACAACGCGATCATGCCCGCGTTCAACGGGATCGGCACCGTC 631 Query 13603 ATCGGTTTCGTGTGGGGCGGTATCAAGTTCTACTTCGACGCCTTTATGGCCGTCCTGCGC 13662 |||||| || |||| ||| | ||| || |||||||| || | | |||||||| | Sbjct 630 ATCGGTGTCTGGTGGTCCGGCGTGAAGGTCATCTTCGACGTCTGGAAGACCGTCCTGACC 571 Query 13663 GTGATCGGTGGCGTCGCAAACTGGTTGTGGCAGAACGTCATGGTGCCGGTGTGGAACGGC 13722 | ||||| ||||| | ||| ||||| | |||||| || |||| || ||||| Sbjct 570 GGTGCCGGTGACGTCGTGATGTGGCTGTGGAACAACGTCGTGACCCCGGCGTTCGACGGC 511 Query 13723 ATCAAGGCCACGATC 13737 ||||||| | | ||| Sbjct 510 ATCAAGGGCGCCATC 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149449035431022