Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031261.1 Length=48670 Score E Sequences producing significant alignments: (Bits) Value seq249899 123 8e-24 seq184310 109 2e-19 >seq249899 Length=916 Score = 123 bits (136), Expect = 8e-24 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 3005 CGAGTACCACGACCACCAGATGGCGCTTGTCGCCCTGGCGCATTTCCTCAACCTCGACGG 3064 |||| ||||||| | ||| ||| ||| || |||| | ||||||||||||||| Sbjct 156 CGAGGGCCACGACAAGGCGATTGCGATTGCCGGGTTGGCCAACCACCTCAACCTCGACGG 97 Query 3065 CAAGGGCGGCAGCTACGCGCTCGCCAGCGTGCAGGCCGACACGTTCGTGCAGTCGGTGCA 3124 |||||||||||| ||||| || |||||||||||| |||| |||||||||||||| | ||| Sbjct 96 CAAGGGCGGCAGTTACGCCCTGGCCAGCGTGCAGTCCGATACGTTCGTGCAGTCCGAGCA 37 Query 3125 GACCGTCGCCGAC 3137 ||||| |||||| Sbjct 36 GACCGAGGCCGAC 24 >seq184310 Length=1059 Score = 109 bits (120), Expect = 2e-19 Identities = 149/201 (74%), Gaps = 13/201 (6%) Strand=Plus/Plus Query 2247 CGCGAGGAGGCGCGAATCGCCTCGGTGCTGCGCGCGATCGGGCTGCCGATCCGCCGCACC 2306 |||||||| || | || ||||||| ||| |||| | |||||||||||| |||||| Sbjct 61 CGCGAGGACGCCCAGGTCACCTCGGTCCTGACCGCGGTGCAGCTGCCGATCCGGCGCACC 120 Query 2307 GACTGGCGGAT-CCGCCCGAACGGCGCCCGCCCCGAGGTGGTCGAGCACGTCGCCGCCTG 2365 | |||||| | ||| | |||||||| ||||| ||||| |||| || ||||| ||| || Sbjct 121 CAGTGGCGGGTGTCGCGC-AACGGCGCTCGCCCGGAGGTCGTCGCGCTCGTCG-CGCGTG 178 Query 2366 -CCTCGGTCTGCCGGTCGAGGGCGATGAATCCGA-CAGGCCGA--CGCCGCGC------A 2415 || ||||||| |||||||||| | || ||||||| |||||||| | Sbjct 179 ATCTGAATCTGCCGATCGAGGGCGAGTCCGCGGAGGAGGCCGACGCGCCGCGCGGCCGGA 238 Query 2416 CCCGGGGCCGGTTCTCGTGGG 2436 |||| ||||| |||||||||| Sbjct 239 CCCGTGGCCGATTCTCGTGGG 259 Score = 93.3 bits (102), Expect = 1e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 3139 AGATCCGCGACGTCGCGCAGGCGCACGTCGTCGAGGACATCGTTGACGTCAACTGGGGCG 3198 ||||| ||||| |||| | |||| | ||||||||| |||||||| |||||||| Sbjct 917 AGATCTGCGACATCGCCAACCAGCACATAGTCGAGGACCTCGTTGACTGGAACTGGGGAC 976 Query 3199 AGGACGAACCTGCGCCGCTGCTGGTGTTCGACGAGATCGGCTCGCGCCAGGACGCG 3254 ||||| | || |||||||||||||||||||||||||| |||| || | |||| Sbjct 977 CCGACGAGCAGGCACCGCTGCTGGTGTTCGACGAGATCGGTTCGCAGCACGCCGCG 1032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155110346182672