Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031266.1 Length=44872 Score E Sequences producing significant alignments: (Bits) Value seq153278 168 2e-37 seq189415 86.0 2e-12 >seq153278 Length=837 Score = 168 bits (186), Expect = 2e-37 Identities = 489/734 (67%), Gaps = 28/734 (4%) Strand=Plus/Plus Query 28904 ACGGGTCGAGCGAGGTGATCGCGTCATGCAGACGCGCGTCGGGCACCTTCGTATAGATCT 28963 |||||||||| | | ||||||| || | || ||| || ||||| || || | | Sbjct 91 ACGGGTCGAGGGTGTCGATCGCGCTGTGGCGGCGGCGGTCCGGAACCTTGGTGTACAGCG 150 Query 28964 GCGTCGTCGCGATGGACTTGTGACGCAGCAGCTCTTGCACGACGCGAATGTCTGCGCCGT 29023 || | | ||| ||| ||| |||| |||||| ||||| || | || || || | Sbjct 151 CGGTTGACTGGATTGACGCGTGGCGCATCAGCTCCTGCACTGTCCGCAGATCCGCACCTT 210 Query 29024 TGTCGAGCAGCGTCGTGGCGTACCAGTGCCGCAGACAATGCGGTGTGCCGCGCACCCCAG 29083 ||||||||| ||||| |||||||||||||||| | || || |||||| | || | Sbjct 211 CGTCGAGCAGTGTCGTTCCGTACCAGTGCCGCAGCGAGTGTGGGGTGCCGGGGACATCGA 270 Query 29084 CTCGCCGCATCGTGCGGCCGATGATGTCGGACACCGATTTCGACAGGATGTGCTCGCC-- 29141 | |||||||||| ||| |||||||||||| || ||||||||| ||| ||||| || Sbjct 271 CGCGCCGCATCGCGCGCCCGATGATGTCGCTGACGGATTTCGACCGGACGTGCTGACCGG 330 Query 29142 --CTCGTTCCCCCGCATCGGGAACCACCACCCGGCGGCCGGCATC-TCTGATGCCATCTC 29198 | ||| || | ||||||||||| ||| || |||||| ||| ||| || Sbjct 331 GGCACGTCGAGTTGC-TGGGGAACCACCATCCGCGGGTGGGCATCGTCT-CGGCCGCGTC 388 Query 29199 GATCAGCAGCGGGTGCAGTGGAACGGACTTCAGCCGCTTGCCCTTGCCTTTGACCCACAG 29258 || || || |||||||| || | ||| | | ||| |||||| | || | ||| Sbjct 389 GACGAGAAGTGGGTGCAGCGGGAGTGACCGCGTCTTGTTGTGCTTGCCGGTCACTCGCAG 448 Query 29259 C-ACGCGTGACGCCAGATCGAAGTCTTCGCCGCGAATCTTGGCAATCTCGTGGACTCGCA 29317 | ||| || || |||||| ||| |||||||| | || || | || || || | Sbjct 449 CGACG-GTTTGGCGGGATCGATGTCCTCGCCGCGCACCTGGGACACGTCTCCCACACGGA 507 Query 29318 GACCGGCCAACAGGGC---TAGCAGAATCATGCGCCGCGTC--GAGGTCCACATGCGGGC 29372 ||||||| ||||| || || ||||| || ||| | ||| ||| || | Sbjct 508 GACCGGC---GAGGGCACACAGAAGGATCATCACGCGGGTCCGGTGGT--GCATCCGCGA 562 Query 29373 CTGCAGCAACGTCGCCACGTCGGCGTCGCTGATTGGACGTGGCTGGCGGTCGGGCAGCCG 29432 |||| | | || || || ||| || || ||||| | ||||||||| |||| Sbjct 563 TGTGAGCAGGATGGGCAGGTGAGCATCGGACATGGGCCGTGGTTCGCGGTCGGGTTGCCG 622 Query 29433 GGGCGCCCCGACTTTCACCATCGGGTTGTCCTCGCGCCGGTCGGTGA-GCTGCAGCCACT 29491 |||| ||| ||||||||||| ||||| || ||||| ||| ||||||||||| Sbjct 623 AAGCGCTGGGACCTTCACCATCGGATTGTCGAGACGTCGGTC-CTGACGCTGCAGCCACG 681 Query 29492 TGAACCA-GGCCGATAGGTAGCTCGTATAGGTGTAGGCCGTCGAGTCCGACCACTCTTC- 29549 | ||||| |||| | || | |||||| || || ||||| | ||| || || Sbjct 682 TAAACCACTGCCG-CACATACGACTGATAGGTCACCGCGGTGGAGTCGGCCCAGTCGTCG 740 Query 29550 --GTGGTCGGCGATCCATCGCACGAGGTCG-GCGGCGCGAATGCTGATCGGCTGCTCACC 29606 ||| | || ||||| || |||| |||| ||| || || ||| |||||| | || Sbjct 741 CGGTGCTGTGCCATCCACCGAACGATGTCGATCGGTTCG-GCGCGGATGGGCTGCACCCC 799 Query 29607 GGACTCGACGTGCA 29620 || ||||| || || Sbjct 800 GGTCTCGAGGTACA 813 >seq189415 Length=2896 Score = 86.0 bits (94), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 10/152 (7%) Strand=Plus/Minus Query 32981 TGCACGCAGACCGACCCCGAGGTGTTCTATCCCGAGAAAGGCGAATCGGTTGAACCGGCG 33040 ||| |||||||||||||||||| ||||| |||||||| |||| ||| ||| ||| Sbjct 551 TGCGCGCAGACCGACCCCGAGGCGTTCTTCCCCGAGAAGGGCGGCTCG-----ACCCGCG 497 Query 33041 CG--CA---CCATCTGCGCGCGGTGCGATGTGCGGGCCAAGTGCCTAGAGGTCGCGCTCG 33095 | || ||||||| | | ||||| ||| ||| ||||||| ||| |||||| Sbjct 496 AGGCCAAGCGCATCTGCCAGGGCTGCGAGGTGAAGGCGGAGTGCCTCGAGTACGCGCTGC 437 Query 33096 CCAACGATGAAGCGTTCGGCATCTGGGGCGGT 33127 ||| || || |||||| |||||||||||| Sbjct 436 ACAAGGACGAGCGGTTCGGTATCTGGGGCGGT 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142996735909564