Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031269.1 Length=51884 Score E Sequences producing significant alignments: (Bits) Value seq157980 307 3e-79 seq139445 199 1e-46 seq46609 167 8e-37 seq180939 114 4e-21 seq184310 91.5 5e-14 seq6603 91.5 5e-14 seq272250 84.2 7e-12 >seq157980 Length=2738 Score = 307 bits (340), Expect = 3e-79 Identities = 536/773 (69%), Gaps = 39/773 (5%) Strand=Plus/Minus Query 36347 GGCATCCACGTCATCGCCGCGACGACCGCCGAGAAGGGTCTCGAGGTCGAGGTCGTCGAC 36406 ||| ||||||| ||||||| |||||| ||| |||||| || ||| ||||||||| Sbjct 1711 GGCGTCCACGTGTTCGCCGCCACGACCAAGGAGCGGGGTCTGCAGACCGACGTCGTCGAC 1652 Query 36407 CTCCGCGAGTTCATCCCCGGTGTGACGCGGTCCGCCGAGTCGGGCACCCGCCTGGTCACC 36466 ||||| ||| | | ||||| || | ||| ||||| | ||||| ||| | |||||| Sbjct 1651 CTCCGTCAGTACGTGCCCGGGCTGCTGTCGTCGCCCGAGGCCGGCACTCGCATCGTCACC 1592 Query 36467 GACGTCCCGTCATTCCTCGCCGAACTCGACCGGTACAGCATCGATCCCGACTTC-TCGAC 36525 |||||| ||| ||| || || |||||||| |||| ||||| ||| | ||||| Sbjct 1591 GACGTCGTGTCGTTCGAGGCTGAGCTCGACCGCTACAAGCTCGATGA-GACCGCGTCGAC 1533 Query 36526 ACTGTGGGGCGACGAGACGAAGGGCCGCGTCGAAGCCGTCTACAACGATCACGCAAACGA 36585 |||||||| ||||||| ||||||||||| | || |||||||||| |||| |||| Sbjct 1532 GCTGTGGGGTGACGAGAACAAGGGCCGCGTGGTCGCGATCTACAACGACCACGTGAACGC 1473 Query 36586 CGGCGCCGGCCTC---------------CGCGACAACCGCCTGCGCCTCGAACTGCGTGC 36630 || || ||| || ||||||||||| |||| || | || ||| | Sbjct 1472 CGCCGACGGTGTCGACGGGCACGGTCACCGCGACAACCGTCTGCAGCTGCAGCTCCGTCC 1413 Query 36631 CGACGACGACTGGGTCGCATGGCACCGACTGTCCGGTAAGTTCCTCCCGCAGATCGAGTT 36690 |||||| ||||||| || |||||| | ||||| | || | |||| ||| ||||| Sbjct 1412 CGACGAGGACTGGGCGGCCTGGCACAAGATTTCCGGGAGGTACATCCCTCAGGCGGAGTT 1353 Query 36691 CGGCGACGCCGTGGAGGAACTCCTTCACACCGTCGTCGACCCGGACCAGGCCGACCTCGT 36750 ||||||| | | ||||| ||||| |||||||| ||| || ||||||||||||||||| Sbjct 1352 CGGCGACATCATCGAGGACCTCCTGCACACCGTGGTCTCACCCGACCAGGCCGACCTCGT 1293 Query 36751 CGAGGTCATCAACTCGATCCGCGCCACCAGCAAGGGCGTGTTCGAGTCCACAGTCGACCG 36810 |||||||||| |||| |||||| |||| |||| || |||||||||||||| || ||| Sbjct 1292 CGAGGTCATCGACTCCATCCGCACCACGAGCAGCGGGGTGTTCGAGTCCACCATCCGCCG 1233 Query 36811 -GTCGAACGGCTCGCAGGCACTCGAGTACCGCAACGAGACCAGCGCGACCGCCGGCGCCG 36869 | || ||| | ||||| ||||||| |||| | || || | || || | ||| Sbjct 1232 CGACG-TCGGTACCCAGGCGCTCGAGTTCCGCGAGGA------CGTGTCCACCAGTGCC- 1181 Query 36870 CTGGCCGAGC---ATCGCGCCTGGAAATCCCGC-AGACCGTAACCCTGGCCATCCGCCCG 36925 || ||| | ||| ||| || | || | || | | || || |||| ||| Sbjct 1180 --GGACGAACTCAATC---CCTCGAGGTGCCTCGCGAGC-TGGTGCTCGCACTCCGGCCG 1127 Query 36926 TGGGAAGGGCTCGACACCTACAAGGTCGAAGGCTGGTTCCGGTTCAACCCCGACCACGGG 36985 | || || | || |||||| ||||| | |||||||| |||| | |||| || Sbjct 1126 TACGAGGGCATGGAGACCTACGAGGTCCGGGCGTGGTTCCGCCTCAAGGTCCACCAGGGA 1067 Query 36986 CGGCTGCTGCTGACCATCAAGCTCAAGCCCACCCGCAACGTGCTGCGCGCCGCATGGGCG 37045 ||||| || || | |||||| || ||||||| ||| |||||| || ||| | Sbjct 1066 TCACTGCTCCTCGCCGTGAAGCTCCGACCGACCCGCACCGTCCTGCGCCAGGCGTGGTCC 1007 Query 37046 GACGTCATCCAGCAGATCGAAACGCACCTCGGCGGGAAGCCGGTCCTGGCCAC 37098 ||| || || | ||||| | ||| | | ||||||||||||||||| Sbjct 1006 GACATCGTCGCCGACATCGAGGCCCACACCACC---AAGCCGGTCCTGGCCAC 957 >seq139445 Length=1680 Score = 199 bits (220), Expect = 1e-46 Identities = 337/480 (70%), Gaps = 15/480 (3%) Strand=Plus/Plus Query 3459 GTGCGCATCAACTCGCCCGGCGGCGACGTGTACGACGCGCTGGCCATCACCAACGCGCTG 3518 || || ||||||||||| |||||| ||||| |||| | || ||| |||||||||| Sbjct 377 GTCCGGATCAACTCGCCGGGCGGCAGCGTGTGGGACGGCATCGCGATCCTCAACGCGCTG 436 Query 3519 CGCAATCACGACGCGACGGTGACGGTGCAGGTCGACAGCCTCGCCGCCAGCG-CAGCCAG 3577 ||| ||| || || ||||| |||||| | |||| || || | ||||| Sbjct 437 CGCGCCCACCGGGCCACCGTGACCACCATCGTCGACGGTGTCGC-GCTGTCGGCGGCCAG 495 Query 3578 CTTCATCGCGATGGCCGGCGACGAGGTCGTGATGTGCCGCAACTCCGAGCTGATGATCCA 3637 ||||||||| |||| ||| ||||||||||||||| |||||| | || ||||||| || Sbjct 496 CTTCATCGCCATGGGCGGTGACGAGGTCGTGATGATGCGCAACGCGCAGATGATGATTCA 555 Query 3638 CGACGCCCGCGGCTTCTGCATCGGCAGCGCCACCGACATGGCTGAGTACGCCGAATGGCT 3697 |||||| || | || |||||| ||| || ||| || |||| ||| ||| Sbjct 556 CGACGCGTCGGGACTGTGTGTCGGCAATTCCAGTGAGATGCAGGACTACGTCGATCTGCT 615 Query 3698 CGGCCGCGCGAGCGACAACATCGCGTCGATCTACGCCGAGAAGACCGGCGGCGACGCC-A 3756 | | | ||||||||||||||||||||||||||||| ||| |||| ||| ||||| | Sbjct 616 CCACAAGACCAGCGACAACATCGCGTCGATCTACGCCGACAAGGCCGGTGGC-ACGCCGA 674 Query 3757 AGGACTGGCGCAAGGCGATGAAGGCCGAAACCTGGTACACGGCGGACGAAGCCGTCGAAG 3816 | | |||||| | ||||| |||||||||||||||| | | | ||| || || | | Sbjct 675 AACAGTGGCGCGCGCTGATGACGGCCGAAACCTGGTACTCCGACGCCGAGGCGGTGCAGG 734 Query 3817 CCGGGCTCGCCGATCGCGTGAAGAGCGACGACACCAAGGACGAGTC---GAAGAAGGCCG 3873 |||| || ||||| || || | | | | | ||||| ||| | || |||| || Sbjct 735 CCGGACTGGCCGACCGAGTCGACAAGGGCAAGTCCAAGACCGACACCGGGACGAAGAACG 794 Query 3874 CGGCCCGATTCGACCT-TCGCGTGTTCGCTCACGCCGGCCGCCGCCAGGCGCCGGCCCCG 3932 | |||||||| ||| ||||| |||||||||||||| |||| ||| |||| Sbjct 795 TG------TTCGACCTGTCG-ATGTTCAACTACGCCGGCCGCCGCGAGGCACCGCGCCCG 847 >seq46609 Length=4533 Score = 167 bits (184), Expect = 8e-37 Identities = 284/407 (70%), Gaps = 20/407 (5%) Strand=Plus/Minus Query 3439 TCGACACCGACAACATCCTGGTGCGCATCAACTCGCCCGGCGGCGACGTGTACGACGCGC 3498 ||||| |||| | ||| | || | ||||||| |||||||| || | ||| || Sbjct 472 TCGACGTCGACGAGATCACGCTGTACGTCAACTCCGGCGGCGGCGGGGTCTCCGAGGCCA 413 Query 3499 TGGCCATC----ACCAACGCGCTGCGCAATCACGACGCGACGGTGACGGTGCAGGTCGAC 3554 | || || |||| | | ||||| ||| | |||| |||||| | | | |||||| Sbjct 412 TCGCGATGCGGAACCACCTCA-TGCGC---CACAAGGCGAAGGTGACCGCGTACGTCGAC 357 Query 3555 AGCCTCGCCGCCAGCGCAGCCAGCTTCATCGCGATGGCCGGCGACGAGGTCGTGATGTGC 3614 | |||||||| || ||| ||| ||| || || | |||||||||||| ||| || Sbjct 356 GGGCTCGCCGCGTCGGCCGCCTCGTTCCTCGTGACGGGTGCCGACGAGGTCGTCATGGGC 297 Query 3615 CGCAACTCCGAGCTGATGATCCACGACGCCCGCGGCTTCTGCATCGGCAGCGCCACCGAC 3674 ||| ||||| |||||||||||||||| | | | || ||| || | ||| |||| Sbjct 296 GAGAACGCCGAGATGATGATCCACGACGCGCTCTCCATCGTCATGGGGAACGCTGGCGAC 237 Query 3675 ATGGCTGAGTACGCCGAATGGCTCGGCCGCGCGAGCGACAACATCGCGTCGATCTACGCC 3734 | | | |||||| ||||| | ||| ||||||||||||||||| ||||| Sbjct 236 CTCCGCGCGGCCGCCGACGAGCTCGACGGCGTCTCGGACAACATCGCGTCGATGTACGCG 177 Query 3735 GAGAAGACCGGCGGCGA---CGCCAAGGACTGGCGCAAGGC---GATGAAGGCCGAAACC 3788 ||||| | ||||| || |||| |||||||| ||| ||||| ||||| ||| Sbjct 176 AAGAAGGCGGGCGGGGAGATCGCC---GACTGGCG---GGCCCTGATGATCGCCGAGACC 123 Query 3789 TGGTACACGGCGGACGAAGCCGTCGAAGCCGGGCTCGCCGATCGCGT 3835 ||||||||||| || || ||||| || ||||| ||||||||||| || Sbjct 122 TGGTACACGGCCGAGGAGGCCGTGGAGGCCGGCCTCGCCGATCGTGT 76 >seq180939 Length=538 Score = 114 bits (126), Expect = 4e-21 Identities = 108/135 (80%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 561 TGGACGCACCCAGAGTGCTGCCTGATCGTTCCGCGGCAGAACGGCAAGTCGCTGATCCTG 620 ||||||||||| ||||||||| ||||||| |||||||||||||| ||||| | | ||| Sbjct 217 TGGACGCACCCGGAGTGCTGCTTGATCGTCCCGCGGCAGAACGGTAAGTCCGAGGTTCTG 158 Query 621 GTGATCCGCGTGC-TGTACGGGCTGTTCAAGCTCGGCGAGAACATCGTCTTCTCGGCACA 679 || | || |||| |||||||| ||||| || |||||||||||| || ||| || | || Sbjct 157 TTGCTGCG-GTGCCTGTACGGGATGTTCGTGCGCGGCGAGAACATTGTGTTCACGACGCA 99 Query 680 CCAGTGGGAGACCGC 694 | |||| |||| || Sbjct 98 GCGGTGGAAGACAGC 84 >seq184310 Length=1059 Score = 91.5 bits (100), Expect = 5e-14 Identities = 201/294 (68%), Gaps = 18/294 (6%) Strand=Plus/Plus Query 2359 AAGCTCGCGCCGCGGCCGCAGCGCACGATCTCGAACTGGAACGTCGCGCTCGACGGCGGC 2418 |||||||||||||| |||||| ||||||||||||| |||||||||||||| || || Sbjct 373 AAGCTCGCGCCGCGCCCGCAGAGCACGATCTCGAAGATCAACGTCGCGCTCGATGGTGGA 432 Query 2419 CTGATGTCGATCGAGCAGTACGCGCCAGCGTCGA--ACGGTGTTGTGAAGTACGGGATCA 2476 || ||||||| |||| | || ||||||| |||||| | ||| ||| Sbjct 433 CTCGAATCGATCGTGCAGCGTCCCCCGGCGTCGATGTCGGTGT--TCAAGGACG------ 484 Query 2477 ACCCGCTGAAGATTCCGATCGGCCGGCTGGTCGTGTACTCGCGCGACCAGGACCCGGGCG 2536 | ||| | || | |||| ||| |||| | ||| | | ||| | ||||| Sbjct 485 AGCCGAT-CGGAGT-CGAT----CGGTTGGTGGCGTATGTGTTCCGTCAGAAACCGGGAT 538 Query 2537 TCTGG-TGGGGCAACTCACTGCTGCGGCCGTCGTACAAGCATTGGCTCCTCAAGGATGAG 2595 ||| | |||| || ||||||| ||| | |||||||| ||||| | ||||| || Sbjct 539 CGTGGATCGGGC-GGTCGATGCTGCGTCCGGCCTACAAGCACTGGCTGATGAAGGACGAC 597 Query 2596 CTGATCCGCTACCAGGCGGTGGCGATCAAGCGCACCGGGATGGGCGTGCCGGTC 2649 ||| ||||| ||| ||| | ||| |||| ||| ||||| |||||||| Sbjct 598 CTGCTCCGCACCCACGCGACGATGATGCGTCGCAACGGCCTGGGCATGCCGGTC 651 Score = 86.0 bits (94), Expect = 2e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 2948 TCCGCGACACCGCGACCGCCCACATCGTCGAGGACCTCGTCGACATCAACTTCGGCGTCG 3007 || |||||| ||| | | ||||| |||||||||||||| ||| |||| || || Sbjct 920 TCTGCGACATCGCCAACCAGCACATAGTCGAGGACCTCGTTGACTGGAACTGGGGACCCG 979 Query 3008 ACGAGCCCTCACCGCGGCTGGTGTTCGACGAGATCGGTTC 3047 |||||| |||||| |||||||||||||||||||||||| Sbjct 980 ACGAGCAGGCACCGCTGCTGGTGTTCGACGAGATCGGTTC 1019 >seq6603 Length=23608 Score = 91.5 bits (100), Expect = 5e-14 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 13577 CGCCTCCGGCGGTGTCATGCCCGGCTACACCCCGGGCCGCGACGTGCACCACTTCGCATC 13636 |||| | || ||||| |||| |||||| |||| ||| |||| ||| ||||| || Sbjct 5996 CGCCGCTGGTGGTGTGCTGCCGGGCTACTCCCCTGGCTTCGACAACCACACCTTCGTCTC 5937 Query 13637 CCCGACCGGCGGCAACCTCGCCCTGTCGGGTGGCGAGGCGATCATGCGCCCGGAATGGAC 13696 ||| || || ||| || |||||| |||||||||||||||||||||||||| ||||| Sbjct 5936 CCCCACTGGTGGCGTGCTGCACCTGTCCGGTGGCGAGGCGATCATGCGCCCGGAGTGGAC 5877 >seq272250 Length=510 Score = 84.2 bits (92), Expect = 7e-12 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 5504 GACGACGAGGAGTTCAACAAGATCTACGTCGGCAACGTCGCCGATC-AGAACATCCGCTA 5562 ||| ||||||||||| |||| ||||| | | || | | | | || |||||||||| Sbjct 15 GACAACGAGGAGTTCCTCAAGGTCTACAAGGACT-CGCTGTCCACCGAGGACATCCGCTA 73 Query 5563 CACCGGCAAGCTGCCGAACAAGGTGCTCAACCTCGACGTGCTCCACTCGCCGCTGTGGCC 5622 |||||||||||| || |||||| ||| || | |||| | | | ||| | | ||||| Sbjct 74 CACCGGCAAGCTACCCCGCAAGGTCCTCGACATGGACGCGATGAAGCCGCGGTTCTGGCC 133 Query 5623 GATCGACCGGGCGCTGGTCGCCGAGCGCGGCACCACCGGCTTCTACGCAGACCCGCGCGC 5682 | ||||| | ||||| |||| | || ||| ||| |||||| ||| | ||| | Sbjct 134 GCGGGACCGCGTCCTGGTGCTCGAGGGTGGAACCGTCGGGTTCTACAGCGACACCCGCCC 193 Query 5683 GCTGGAGTCGACCGGGATGTACCCGGAGGG 5712 ||| || | ||||| ||||| ||||| Sbjct 194 GCTCGAAGCCACCGGCCTGTACGGCGAGGG 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 165361305481716