Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_031936.1 Length=49979 Score E Sequences producing significant alignments: (Bits) Value seq235444 224 3e-54 seq54171 219 1e-52 seq171065 136 1e-27 seq148523 91.5 5e-14 seq20617 82.4 2e-11 >seq235444 Length=879 Score = 224 bits (248), Expect = 3e-54 Identities = 225/292 (77%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 19973 CGGTGCGGTCCAGTCGTTCCAGGGCGGCGTGCTGTATCGCAAGGATGGCCAAGATCACCA 20032 ||| |||||| | ||||||||||||| ||||| || |||||||| || || Sbjct 7 CGGCGCGGTCATGGCGTTCCAGGGCGGTGTGCTCTACCGCAAGGACGGGCAGCCCGGGTT 66 Query 20033 CGTCGTCAAAGGTGTCATCGGCCAGCGGTGGGCGCTCGAGGGCTACGAGAAAGGCCCTCT 20092 |||||| || || |||||||||||||| ||||| | ||| || |||||||| ||| || Sbjct 67 CGTCGTGAAGGGCGTCATCGGCCAGCGCTGGGCCCGCGACGGATACGAGAAGGGCGACCT 126 Query 20093 CGGCTGGCCGACGTCCGACGAGATCCCGAACGGCACCGGCGGCAAGTACCAGACCTTCGA 20152 ||||||||| | |||||||||||||| ||||||||||||||| ||| |||||| Sbjct 127 CGGCTGGCCCATCTCCGACGAGATCCCCAACGGCACCGGCGGCGTCGTGCAGCTCTTCGA 186 Query 20153 GCACGGCGTCCTCGAGTGGGACCCGTCAGGCGCGGTGAAGAAGATCGGCGCAGCCGCGAA 20212 |||||| |||||||||||||| | |||||||| ||| | ||||||| ||||| | Sbjct 187 GCACGGACGCCTCGAGTGGGACCGCACCGGCGCGGTCAAGGAACTCGGCGCCGCCGCCAC 246 Query 20213 GGATCTCACGCTCGTCAACGCGGCCGGCGTCCCGCTGGCCGTCGAAGCAGTC 20264 || | ||| |||||||||| |||||| |||| |||||||||| || ||| Sbjct 247 CGACCACACCATCGTCAACGCCGCCGGCCTCCCTGTGGCCGTCGACGCCGTC 298 >seq54171 Length=260 Score = 219 bits (242), Expect = 1e-52 Identities = 207/262 (79%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 19188 GATCCCGTTTGGCTCCCCGACGTACTACGCGCCGAAGGTCTGCGCTGCGACATCTACCCC 19247 |||||| | ||||||||||| || || ||||| | | || ||||||||||||||| Sbjct 1 GATCCCATCTGGCTCCCCGAGGTGCTGCGCGCAGCGCGCCTCACATGCGACATCTACCCC 60 Query 19248 GGCGCGTTCGAGCGCGGCCACGGCGACTTCGGCACCATCTGGGG--TCCATTCATGCACC 19305 ||||| ||| |||||||||||||||||||||| | |||||||| ||| || |||| Sbjct 61 GGCGCATTCCAGCGCGGCCACGGCGACTTCGGGTCGATCTGGGGCATCC--TCGACCACC 118 Query 19306 ACACCGGCTCGTTCGGCGAGACACCGCAGGGCATCGCGCAGCACTCCTCGCTCGGCCTCG 19365 |||||||| ||||||||||| |||| || ||||| ||||| | |||||||| || | Sbjct 119 ACACCGGCAGCTTCGGCGAGACGCCGCGCGGTATCGCCGAGCACCCGTCGCTCGGTCTGG 178 Query 19366 CGTCACAGCTGCACCTCGCGGCGAACGGCGTCGTCACGCTGTGCGGCGTCGGAGTGGCCT 19425 |||| |||||||||||| || |||| || | ||||||||| || ||||| | |||| Sbjct 179 CGTCGCAGCTGCACCTCTCGCCGAAGGGTCGCTACACGCTGTGTGGTGTCGGGATCGCCT 238 Query 19426 GGCACGCCGGCACCGGATCATG 19447 |||||||||||||||| || || Sbjct 239 GGCACGCCGGCACCGGGTCGTG 260 >seq171065 Length=1298 Score = 136 bits (150), Expect = 1e-27 Identities = 140/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 45071 ACGACCCCGTAAACAAACCCCAGCACTATCGGTCGCACGCCAGCGGCGTCGAGTGCATCC 45130 ||||| | || ||||| || |||||||| | |||| |||||||||| ||||||||| Sbjct 15 ACGACTCGGTGAACAACCCGCAGCACTACGTGACGCATCCCAGCGGCGTGGAGTGCATCG 74 Query 45131 AAATCACCGAGCACATGGGGTTCTGCCTCGGAAACGCCGTCAAGTACATCTGGCGGGCCG 45190 | ||||||||||||||||| | | ||||| |||| |||||||| ||||||| |||| Sbjct 75 AGATCACCGAGCACATGGGCTACCTGCTCGGCAACGTGATCAAGTACGTCTGGCGCGCCG 134 Query 45191 ACCTGAAACACGATGCGATCGAGGACCTGGAGAAGGCGCGCTGGTATCTGGATCGTGAGA 45250 || | || ||| || | |||||| || ||||||| || | || ||||| || |||| Sbjct 135 ACATCAAGGGCGAGGCACTGGAGGACTTGAAGAAGGCCCGGTTCTACCTGGACCGGGAGA 194 Query 45251 TCG 45253 ||| Sbjct 195 TCG 197 >seq148523 Length=1916 Score = 91.5 bits (100), Expect = 5e-14 Identities = 127/175 (73%), Gaps = 5/175 (3%) Strand=Plus/Plus Query 41793 CCCGCACCCGCACCGACCGAACTCAACAGCAACGACCGGCCCCGCCTCAATGCCGCGTTC 41852 || || |||||||||||||||| |||| ||| | | ||||| || || |||| Sbjct 544 CCTGCGCCCGCACCGACCGAACCGAACACCAAGGGCAACCCCCGGCTGTCCGCGCTGTTC 603 Query 41853 GCCGAATGGATGATGGGCCTCCCCGCCGGCCATGTCACCG---CGGTACCCGGCCTGTCC 41909 | |||||||||||| ||||| ||||||| ||||||| | | ||| ||| || Sbjct 604 CCGGAATGGATGATGTTCCTCCGCGCCGGCTGGGTCACCGACCCCGCCATCGGGCTGACC 663 Query 41910 CGTGCCGACCAGTTGAAGGCGATCGGTAACGGGGT-GTGCCCGCCGCAAGCGTTC 41963 || ||| ||| | ||||| ||||| ||||| || ||| |||||||| |||||| Sbjct 664 CGCAACGAGCAGCTCAAGGCCATCGGCAACGGTGTCGTG-CCGCCGCAGGCGTTC 717 >seq20617 Length=36039 Score = 82.4 bits (90), Expect = 2e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 45104 CGCACGCCAGCGGCGTCGAGTGCATCCAAATCACCGAGCACATGGGGTTCTGCCTCGGAA 45163 |||||||||| || ||||||||||| | |||||| |||||||| |||||| | || | Sbjct 28208 CGCACGCCAGTGGGATCGAGTGCATCGAGATCACCAAGCACATGAACTTCTGCTTGGGCA 28149 Query 45164 ACGCCGTCAAGTACATCTGGCGGGC 45188 |||| | |||||||||||||| || Sbjct 28148 ACGCGATGAAGTACATCTGGCGCGC 28124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159285363520086