Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20pachinus_20[genbank_20GCA_5F900068735.1_202017-04-26] 277,083 sequences; 279,264,790 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq10526 181 8e-41 seq28654 109 4e-19 seq41046 100 2e-16 seq76306 91.5 1e-13 >seq10526 Length=5062 Score = 181 bits (200), Expect = 8e-41 Identities = 773/1210 (64%), Gaps = 45/1210 (4%) Strand=Plus/Plus Query 5735 TGTTACCTA-ACCCTTGATTCATGGAGTTTAACAAGTCGCCGTTGTCCGCGTCGATTTCC 5793 ||||||| | |||| || ||||||| || | | ||| || || || ||||| | |||| Sbjct 2929 TGTTACCGAGACCCATG-TTCATGGCATTCAGTAGGTCACCATTATCAGCGTCCACTTCC 2987 Query 5794 CATCCAAATAGACCCCCCAGCCCCTTTTGGATGACATATTTTCCCTTGGCCGTCACGGAC 5853 || |||| ||||| || ||| || | | |||||||| ||||| | | || || Sbjct 2988 CAAGCAAAGAGACCACCTAGCTTGTTATTTCTTACATATTTACCCTTTTCAATAACAGAT 3047 Query 5854 CTCTCGTCGTCGTAGGTGACGAGATCGTC-GTTG-TGGT----ACACGTAGGGCGCTTGC 5907 || | | || ||||| || ||||| | |||| |||| | || ||||| ||||| Sbjct 3048 CTAGCATTATCATAGGTTACAAGATCTCCAGTTGATGGTCTGAAAACATAGGGGGCTTGG 3107 Query 5908 GCCACTCCGTCGTAAT-----------TCGGGTTGGG--ATACCGGTTCGTGATGTCTTT 5954 || || |||||||| | | ||| | || | |||| || || | Sbjct 3108 GCGACATTGTCGTAATGGAACTCCCACTTGCCTTGAGCAATTTCA-TTCGCAATCTCCCT 3166 Query 5955 GTAGTCCACGACACCGTTTTCCCAGGAACCCTTTACGGGACCCGTGGCAGTGCCTGTGAA 6014 |||||| || || |||| || ||| | || || || || || || || |||||||||| Sbjct 3167 GTAGTCAACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTAGCGTTGCCTGTGAA 3226 Query 6015 GGGATTGTTGT--TGGTGATGTTGTGGATTCCACGCCATCCCCTGCCGTACATGGCCACG 6072 |||| |||||| | || || || | ||| ||| || | || ||||| || || Sbjct 3227 GGGAATGTTGTCTTCGTAATCATGA--ACGCCAGTCCAGCCACGACCATACATAGCAACA 3284 Query 6073 CCCACCACCAATTTGTTTGGGTTCACGCTCTGATTGAGCAGGCGTTGGACGGCGAACGCG 6132 || || || | || || || ||||| | ||| |||| | || || | || | Sbjct 3285 CCTACTACAATCTTCTTAGGATTCACTCCCTGCGCCAGCAAGTATTTTACTCCAAAGTCA 3344 Query 6133 GTGGTGTACTTTTCGGTGGGGTTCCATGTGGGCGCGTACAGGGGCGTCTGCAGTCCCAGA 6192 | ||||| |||| |||| ||||| | |||||||||| ||||| || |||| ||| Sbjct 3345 GATGTGTAAGTTTCCTTGGGATTCCACGCAGGCGCGTACAATGGCGTTTGATGTCCAAGA 3404 Query 6193 TCGGTGTTAGACCAGGCTCCCTTGAAATCGTACGTCATGACGAAAATATGATCCAGATAC 6252 || ||||||||||||||||| ||||| |||| | |||||||||||||| ||| Sbjct 3405 GTATCATTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAA 3464 Query 6253 TCCTGCACCGCACCGTATTCTACAACGTTTATTTTGTCGTAGCCCCCGCTGATGGCGCTT 6312 | || || ||| || || ||||| | ||||| || | || |||| || || Sbjct 3465 TTTTGAGCCTTACCATAGTCAACAACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAA 3524 Query 6313 GTGAGCAGATACTTGCGACCCGTGCGAGTCTCCAGACCGTCCAGCATGGACCTGAGGTCG 6372 || | || || ||| | || || | || ||||| | | || Sbjct 3525 GTTAATTCGTATTTCTTACCATTCTTAGCAGAGAGCTCATCGAGCATCTCACGTAATTCT 3584 Query 6373 CCCAAGAGCGCTTGATAGGTGACGCCGTCGACTGTGACGTTTCCTAAGGCAGGATTGGCT 6432 || | | ||| | || || ||| | | || | | |||| || || Sbjct 3585 TTCATCAAACTTACATAACAATCACCATCTTCTG---GGCTACCGAGGTCAGGGTTAGCA 3641 Query 6433 CCCTTGCCTCCGGGAAATTCCCAATCTATGTCCACGCCGTCGAAGAACTTCCAAGTTTCC 6492 || ||||| || || || |||||||| || || || || |||||||| ||||| ||| Sbjct 3642 CCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGA 3701 Query 6493 AGAAATTCTTCGACGCTCTCTACGAACACCTTTCTTTTAATCGTGTCGTTGAGCTGGTAA 6552 ||||| || | || || || || |||| ||| |||| | | | Sbjct 3702 AGAAACTCCTTTACTGACTGCACAAATCGTGTTCTCTTAGATTTGTCAACTAAAAAGAAG 3761 Query 6553 AAGGGATCGCTCAGCGTCCACCCACCGATCGAGGGCAGGATGGTCAGAT----GCGGATT 6608 || |||||| |||||||||||||| || ||||| || || ||| | |||| | Sbjct 3762 AAAGGATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGCT 3821 Query 6609 GTGTTTTCGTATGGCCATAAGCTGACCGAAATTACCCTTGTA----CATTTCCGAGTAGG 6664 |||||| || | ||| | || || || || || ||||| |||| | || Sbjct 3822 -TGTTTTAGT---GACATTAATTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGAAGA 3877 Query 6665 CCTCGACGCCCTTCTGGGGTTTTTGTAGTGCGCCCCATATATCGTGTATGGACACCTTGA 6724 | | || || || |||||||||| ||| ||||| |||||| || || || |||| Sbjct 3878 C----AATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGA 3933 Query 6725 AGTCGTCTCGTCCCTCGCACGATCGCTGCAGAGCTTCGAACGAGCCCGGCACCTGTTTCA 6784 |||| || || || || |||||||| || |||| ||| ||| | || ||| | Sbjct 3934 AGTCCTCACGGCCGCTACAGGATCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTTTA 3993 Query 6785 GAGCGTCGTTGATACCATCCCCTCCGCACATGGGCACGAATCCGTACAGCAGATGTGTGA 6844 | || || || || || || ||||| || || | || ||||| |||| ||| || | Sbjct 3994 AACTATCATTAATGCCGTCACCGCCGCAAATTGGAATAAAGCCGTAGAGCAAATGAGTAA 4053 Query 6845 GATTGGGAATGGGGATTCTGTCGGCGGGAAACTGTCTGTCGTAAACACCCCACTCCACGA 6904 |||| || || || || | || |||| || | || || |||||||| || |||| Sbjct 4054 GATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGACACCCCATTCTACGA 4113 Query 6905 AGTAAGCTCC 6914 |||| || || Sbjct 4114 AGTAGGCACC 4123 >seq28654 Length=3315 Score = 109 bits (120), Expect = 4e-19 Identities = 167/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || |||| ||| | || || | ||||| || ||| ||||||||||| Sbjct 1466 TATTTGCATACCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTT 1525 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| || | || ||| | || || |||||||| || |||||||| | ||| || || Sbjct 1526 GTAGTCAGACAGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTG 1585 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGC 44280 ||||| || | ||| || || || ||||| ||| | || | |||||||| | Sbjct 1586 ATCTGGGGGAATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGA 1645 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||||| || || ||||| || || || ||||| || || |||||||| Sbjct 1646 TGGCTCCACCTCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 1702 Score = 109 bits (120), Expect = 4e-19 Identities = 167/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || |||| ||| | || || || ||||| || ||||||||||||||| Sbjct 1694 TATTTGCATACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTT 1753 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| || | ||| ||| | || |||| ||||| || |||||||| | ||||||||| Sbjct 1754 GTAGTCAGAGAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTG 1813 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGC 44280 ||| | || | || || || || || || || | || | || || || | Sbjct 1814 ATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGA 1873 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||| |||| ||||| |||||||| || ||||| || || || || ||||| Sbjct 1874 GGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 1930 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || ||||||||||| || || | || ||| | || || | ||| || || |||||| Sbjct 600 TCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAG 659 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | |||||| || |||| || | || ||||| || ||||| ||| | || Sbjct 660 ATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTAACATTT 719 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||||| | |||||||||| || || ||||| || || || ||||| || Sbjct 720 TCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTCTTAACA 779 Query 44327 AAGATTTGCAT 44337 ||||| ||||| Sbjct 780 AAGATCTGCAT 790 >seq41046 Length=7774 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||| |||||||| || | | | || | || || || || || || |||||| Sbjct 7191 TCCTTTTGAATGTTGTAGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAG 7250 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA-TGT 44265 |||||||| ||||| |||| || | ||||||||| || || || || || | Sbjct 7251 ATCAAACGTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTAACATT 7310 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||| || || | || |||||||| | ||||| || || ||||| |||||||| || Sbjct 7311 TTCTATAGTATCAGAGGCCTCCACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGAC 7370 Query 44326 GAAGATTTGCATGATGTGA 44344 ||| |||||||| ||||| Sbjct 7371 GAAAATTTGCAT--TGTGA 7387 >seq76306 Length=316 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || || || | ||| || | ||| | || ||||| ||||| || || Sbjct 290 TTGCATTCCACCCCTTAGACGCAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATA 231 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | | |||| | || ||||| ||||| ||||| || |||| | || ||||| Sbjct 230 GTCTGACAATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATC 171 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || ||| | |||||||| || ||||| ||| | || | || || || | | Sbjct 170 TGGAGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGC 111 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||||| |||| || || || || || || | || || |||||||||||||||||| Sbjct 110 TTCCACTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATG 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358774730756211